Thu Apr 15 20:40:00 2021

/usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -p -j 1 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/NC_000913_3.gb /var/alemutpipe-outputs/good/EEP_appC-cydB-ndh_A12F22I0R1_S40_L003_R1_001.good.fq.gz /var/alemutpipe-outputs/good/EEP_appC-cydB-ndh_A12F22I0R1_S40_L003_R2_001.good.fq.gz