mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | K(+) : H(+) antiporter KefC/dihydrofolate reductase |
| RA | 49,884 | C→T | P21L (CCG→CTG) | folA → | dihydrofolate reductase |
| RA | 49,905 | T→G | L28R (CTC→CGC) | folA → | dihydrofolate reductase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 481,400 | C→T | A1002T (GCA→ACA) | acrB ← | multidrug efflux pump RND permease AcrB |
| RA | 485,614 | G→T | N2K (AAC→AAA) | acrA ← | multidrug efflux pump membrane fusion lipoprotein AcrA |
| RA | 803,662 | C→A | L54I (CTT→ATT) | ybhJ → | putative hydratase YbhJ |
| RA | 1,905,761 | G→A | G25D (GGT→GAT) | mntP → | Mn(2(+)) exporter |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 4,182,820 | C→T | H526Y (CAC→TAC) | rpoB → | RNA polymerase subunit beta |
| RA | 4,390,754 | G→T | A252A (GCC→GCA) | rsgA ← | ribosome small subunit‑dependent GTPase A |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423711–3424234 | 3424593–3424238 | 5–883 | 7 [6] | [6] 7 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 4296108–4296378 | 4296398 | 21–291 | 9 [5] | [4] 18 | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 68 (1.520) | 33/120 | 0.0 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1603798 | 33 (0.690) | 10 (0.210) | 7/128 | 2.0 | 23.0% | coding (780/1029 nt) | lsrC | Autoinducer‑2 ABC transporter membrane subunit LsrC |
| ? | NC_000913 | 1603802 = | 34 (0.710) | coding (784/1029 nt) | lsrC | Autoinducer‑2 ABC transporter membrane subunit LsrC | |||||