mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,791 | G→A | intergenic (+160/‑32) | kefC → / → folA | K(+) : H(+) antiporter KefC/dihydrofolate reductase |
| RA | 49,905 | T→G | L28R (CTC→CGC) | folA → | dihydrofolate reductase |
| RA | 49,910 | T→A | W30R (TGG→AGG) | folA → | dihydrofolate reductase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| MC JC | 575,786 | Δ991 bp | IS5‑mediated | nmpC ← | DLP12 prophage; putative outer membrane porin NmpC |
| RA | 803,662 | C→A | L54I (CTT→ATT) | ybhJ → | putative hydratase YbhJ |
| RA | 1,905,761 | G→A | G25D (GGT→GAT) | mntP → | Mn(2(+)) exporter |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 3,003,829 | C→A | T114N (ACC→AAC) | xdhC → | putative xanthine dehydrogenase iron‑sulfur‑binding subunit XdhC |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 4,390,754 | G→T | A252A (GCC→GCA) | rsgA ← | ribosome small subunit‑dependent GTPase A |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423713–3424234 | 3424589–3424238 | 5–877 | 5 [3] | [4] 8 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 4296119–4296380 | 4296388 | 9–270 | 5 [3] | [4] 5 | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 39579 = | 45 (0.910) | 427 (8.650) | 59/128 | 0.0 | 89.0% | coding (808/1143 nt) | caiA | crotonobetainyl‑CoA reductase |
| ? | NC_000913 | = 55230 | 61 (1.240) | coding (1880/2355 nt) | lptD | lipopolysaccharide assembly protein LptD | |||||
| * | ? | NC_000913 | 1207790 = | 6 (0.120) | 47 (1.270) | 22/96 | 0.1 | 84.3% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 13 (0.350) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 6 (0.120) | 27 (0.730) | 16/96 | 0.3 | 75.5% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 13 (0.350) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 71 (1.530) | 33/120 | 0.0 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||