mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | K(+) : H(+) antiporter KefC/dihydrofolate reductase |
| RA | 49,910 | T→G | W30G (TGG→GGG) | folA → | dihydrofolate reductase |
| RA | 50,102 | A→C | I94L (ATT→CTT) | folA → | dihydrofolate reductase |
| RA | 803,662 | C→A | L54I (CTT→ATT) | ybhJ → | putative hydratase YbhJ |
| RA | 1,905,761 | G→A | G25D (GGT→GAT) | mntP → | Mn(2(+)) exporter |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,243,036 | G→T | S206Y (TCC→TAC) | folE ← | GTP cyclohydrolase 1 |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 4,390,754 | G→T | A252A (GCC→GCA) | rsgA ← | ribosome small subunit‑dependent GTPase A |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 246194 | 246681 | 488 | 57 [0] | [4] 5 | [yafQ]–dinJ | [yafQ],dinJ |
| * | * | ÷ | NC_000913 | 246721 | 275090–273955 | 27235–28370 | 5 [4] | [4] 5 | [yafL]–[insH‑1] | [yafL],rayT,lfhA,lafU,dinB,yafN,yafO,yafP,ykfJ,prfH,pepD,gpt,frsA,crl,insB9,insA9,crl,phoE,proB,proA,thrW,ykfN,ykfI,yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,[insH‑1] |
| * | * | ÷ | NC_000913 | 3423712–3424589 | 3424589 | 1–878 | 5 [4] | [4] 5 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 4296120–4296379 | 4296380 | 2–261 | 5 [4] | [0] 7 | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 246193 | 0 (0.000) | 56 (1.260) | 30/128 | 0.1 | 100% | coding (47/279 nt) | yafQ | ribosome‑dependent mRNA interferase toxin YafQ |
| ? | NC_000913 | 273955 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1207790 = | 7 (0.160) | 33 (0.990) | 23/96 | 0.1 | 74.8% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 17 (0.510) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 8 (0.180) | 39 (1.170) | 18/96 | 0.2 | 77.2% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 17 (0.510) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 54 (1.300) | 31/120 | 0.0 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||