Sat Dec 19 18:32:33 2020

/usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -j 1 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/NC_000913_3_Pae_pgi.gb /var/alemutpipe-outputs/good/SvNSRound5_1_58_S2447_L007_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SvNSRound5_1_58_S2447_L007_R2_001.good.fq.gz /var/alemutpipe-outputs/good/SvNSRound5_1_58_S2447_L008_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SvNSRound5_1_58_S2447_L008_R2_001.good.fq.gz