mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 121 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6170484 | 89 (1.390) | 3 (0.050) | 3/242 | NT | 3.4% | coding (1818/1836 nt) | glmS | L‑glutamine/D‑fructose‑6‑phosphate aminotransferase |
| ? | NC_002947 | = 6170510 | 86 (1.410) | coding (1792/1836 nt) | glmS | L‑glutamine/D‑fructose‑6‑phosphate aminotransferase | |||||
| * | ? | NC_002947 | 6096448 = | 88 (1.380) | 3 (0.050) | 3/238 | NT | 3.5% | coding (250/1416 nt) | pycA | pyruvate carboxylase subunit A |
| ? | NC_002947 | 6096489 = | 82 (1.370) | coding (209/1416 nt) | pycA | pyruvate carboxylase subunit A | |||||
| * | ? | NC_002947 | 6087564 = | 56 (0.880) | 3 (0.050) | 3/236 | NT | 4.9% | intergenic (+15/‑215) | oruR/aphA | ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase |
| ? | NC_002947 | 6087646 = | 64 (1.080) | intergenic (+97/‑133) | oruR/aphA | ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase | |||||
| * | ? | NC_002947 | = 6056495 | 67 (1.050) | 3 (0.050) | 3/244 | NT | 4.3% | coding (622/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
| ? | NC_002947 | = 6056520 | 69 (1.120) | coding (647/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator | |||||
| * | ? | NC_002947 | 5970657 = | 71 (1.110) | 3 (0.050) | 3/242 | NT | 4.4% | coding (637/2124 nt) | PP_5236 | hypothetical protein |
| ? | NC_002947 | 5970718 = | 62 (1.020) | coding (576/2124 nt) | PP_5236 | hypothetical protein | |||||
| * | ? | NC_002947 | = 5963509 | 91 (1.420) | 4 (0.070) | 4/240 | NT | 4.5% | coding (309/711 nt) | PP_5229 | hypothetical protein |
| ? | NC_002947 | = 5963548 | 83 (1.370) | coding (348/711 nt) | PP_5229 | hypothetical protein | |||||
| * | ? | NC_002947 | 5925111 = | 67 (1.050) | 3 (0.050) | 3/242 | NT | 4.7% | coding (1034/1083 nt) | gcvT‑II | aminomethyltransferase |
| ? | NC_002947 | 5925158 = | 59 (0.970) | coding (987/1083 nt) | gcvT‑II | aminomethyltransferase | |||||
| * | ? | NC_002947 | = 5899163 | 79 (1.230) | 4 (0.070) | 4/240 | NT | 4.6% | coding (1725/3054 nt) | PP_5173 | RND family transporter |
| ? | NC_002947 | = 5899206 | 91 (1.510) | coding (1682/3054 nt) | PP_5173 | RND family transporter | |||||
| * | ? | NC_002947 | 5883076 = | 60 (0.940) | 4 (0.070) | 3/242 | NT | 6.9% | coding (118/477 nt) | PP_5156 | hypothetical protein |
| ? | NC_002947 | 5883115 = | 50 (0.820) | coding (79/477 nt) | PP_5156 | hypothetical protein | |||||
| * | ? | NC_002947 | 5871822 = | 63 (0.980) | 3 (0.050) | 3/236 | NT | 4.6% | coding (831/2280 nt) | ptsP | phosphoenolpyruvate‑dependent regulator |
| ? | NC_002947 | 5871876 = | 66 (1.110) | coding (777/2280 nt) | ptsP | phosphoenolpyruvate‑dependent regulator | |||||