mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 24.1% | 105.5 / 26.6 | 59 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 16 (0.140) | 13/484 | 7.1 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1096961 = | 88 (0.720) | 26 (0.310) | 5/340 | 8.2 | 29.7% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 63 (0.760) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 8 (0.070) | 8/492 | 9.2 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 4094338 = | NA (NA) | 5 (0.050) +23 bp |
5/454 | 10.2 | NA | noncoding (23/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | = 4094682 | NA (NA) | noncoding (367/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913 | 2166351 = | 148 (1.220) | 5 (0.040) | 5/482 | 10.6 | 3.5% | coding (684/1362 nt) | yegQ | putative peptidase |
| ? | NC_000913 | 2166410 = | 130 (1.110) | coding (743/1362 nt) | yegQ | putative peptidase | |||||
| * | ? | NC_000913 | = 64557 | 138 (1.140) | 4 (0.030) | 4/482 | 11.3 | 3.0% | coding (1224/2352 nt) | polB | DNA polymerase II |
| ? | NC_000913 | = 64577 | 127 (1.080) | coding (1204/2352 nt) | polB | DNA polymerase II | |||||
| * | ? | NC_000913 | = 2713829 | 145 (1.190) | 4 (0.030) | 3/478 | 11.9 | 2.9% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713908 | 127 (1.090) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | = 2423599 | 127 (1.080) | 7 (0.060) +GCA |
3/480 | 12.0 | 5.1% | intergenic (‑60/+137) | yfcI/hisP | transposase_31 family protein/histidine ABC transporter ATPase |
| ? | NC_000913 | 2423600 = | 133 (1.100) | intergenic (‑61/+136) | yfcI/hisP | transposase_31 family protein/histidine ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 2319247 | 125 (1.030) | 3 (0.030) | 3/484 | 12.0 | 2.5% | coding (630/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| ? | NC_000913 | = 2319264 | 117 (1.000) | coding (613/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||
| * | ? | NC_000913 | = 2230414 | 128 (1.050) | 3 (0.030) | 3/484 | 12.0 | 2.4% | intergenic (‑29/‑210) | dusC/yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein |
| ? | NC_000913 | = 2230417 | 121 (1.030) | intergenic (‑32/‑207) | dusC/yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein | |||||