Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1598066	1598482	417	34 [33]	[33] 34	yneO/lsrK	pseudogene, AidA homolog/autoinducer‑2 (AI‑2) kinase

CTCCAGTGCCATACCAGCCAACCAGGTAGGCATCATAAGCAACATCAGTATCAATATTGGTAATCTGATCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAAT  >  NC_000913/1597813‑1598237                                                                                                                                                                                                                                                             |                                                                                                                                                                             cTCCAGTGCCATACCAGCCAACCAGGTAGGCATCATAAGCAACATCAGTATCAATATTGGTAATCTGATCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTc                                                                                                                                               >  1:685224/1‑284 (MQ=255) cTCCAGTGCCATACCAGCCAACCAGGTAGGCATCATAAGCAACATCAGTATCAATATTGGTAATCTGATCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCATGAAATACCTGTAGAGTGCAATTCCATATCAAGCGATAGATTCTATTCATATAAACGCTCCATATAAAAAAAATAc                                                                                                                               >  1:418520/1‑300 (MQ=255)      gTGCCATACCAGCCAACCAGGTAGGCATCATAAGCAACATCAGTATCAATATTGGTAATCTGATCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCa                                                                                                                          >  1:30718/1‑300 (MQ=255)                                   atAAGCAACAGCAGTATCAATATTGTTAATCTGATCATTATCAACGTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCGACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTaaaaa                                                                                            <  1:248970/301‑1 (MQ=255)                                    tAAGCAACATCAGTATCAATATTGGTAATCTGATCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCatat                                                                                                                                                                              <  2:470379/218‑1 (MQ=255)                                        cAACATCAGTATCAATATTGGTAATCTGATCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCa                                                                                                                                                                            >  2:594828/1‑216 (MQ=255)                                        cAACATCAGTATCAATATTGGTAATCTGATCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTc                                                                                                                                                           <  1:594846/233‑1 (MQ=255)                                            ttcggtctcacgatTGGTAATCTGCTCATTATCACCTTCCAGCCTGGCACCAGACCCGTACCCCCTTTTTGCCAGCAAAACACCCACCATCAAACTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTCCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTACAATTCCATATCACGCGAt                                                                                                                                                                      <  2:414955/206‑1 (MQ=255)                                                 tATCAATATTGGTAGTCGGATCAGTATCAACTTCCATACTTGCACCAGGCGTTGAACCGCATAGTGCCAGCAAAACACCCAGCGTCAATCTACTTAATTTCGTGGTCAGTCCAGCGGATTTACGCAAATTAACCGTCTATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGAtt                                                                                                                                                                 <  2:318048/218‑1 (MQ=255)                                                         ttGGTAATCTGATCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCAAGCGTCAATCTACTGAATTTCGTTGTTAGTCCAGAGGATTTACGCAACTTAACCGTCGATGTTCTACCTGCCCTGCGAGTTAATTCCGAGCTGGCCTGTAATACCTGTAGACTGCAATTCTATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACCAAAGAGATGAGCCGTCAGCCATTAAAAAAGAAACTTATTAAATTGTCaga                                                                      >  1:325797/1‑301 (MQ=255)                                                                 cTGATCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGc                                                                                                                                                 <  2:295019/218‑1 (MQ=255)                                                                 cTGAGCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATATGCCGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGGGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAAc                                                                                                                                                   <  2:354461/216‑1 (MQ=255)                                                                   naTCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTc                                                                                                                                               <  2:685202/217‑1 (MQ=255)                                                                   gATCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACg                                                                                                                                                  >  2:579938/1‑215 (MQ=255)                                                                   gATCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTAt                                                             <  1:579955/300‑1 (MQ=255)                                                                    aTCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTAttt                                                           >  1:74593/1‑300 (MQ=255)                                                                        ttATCAGCGTCCAGACTTGCACCAGACGCTGAACCGCTTATTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTACATTGTCAGAGGTCTGTATTGAgtg                                                       <  1:241072/301‑1 (MQ=255)                                                                              aCTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATacaaac                                                                                                                                    <  2:75554/218‑1 (MQ=255)                                                                                      aCTTTCACCAGACGCTTAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATAc                                                                                                                               <  2:418511/215‑1 (MQ=255)                                                                                                            cTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAg                                     <  1:179791/283‑1 (MQ=255)                                                                                                            cTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCAACGAAAGAGATGAGTAGTAAg                                                                                                      >  2:179786/1‑218 (MQ=255)                                                                                                                gTGCCAGCAAAACGCCCAGCGTCAAGCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGACCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATAc                                                                                                                               <  2:141808/189‑1 (MQ=255)                                                                                                                                                     cGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTAt                                                             <  2:30717/218‑1 (MQ=255)                                                                                                                                                       ttGTCAGTCCAGTGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTACTTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATGTACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTAATAAATTGTCAGAGGTCTGTAt                                                             <  2:593198/216‑1 (MQ=255)                                                                                                                                                          taagaccAGAGGATATACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAATTAATTCCGAGCAGGCCTGAAATACCTGAAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCACCATATACAAACAATACAGCCGCGAAAGAAATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGATCTGTATTGAg                                                         <  2:291612/212‑1 (MQ=255)                                                                                                                                                                             cAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTAt                                                             >  2:480079/1‑194 (MQ=255)                                                                                                                                                                             cAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTAt                                                             <  1:480091/194‑1 (MQ=255)                                                                                                                                                                              aaaTTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAgg                                    <  2:74592/218‑1 (MQ=255)                                                                                                                                                                                            tGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCAtata                                                                                                                                                      <  1:742850/90‑1 (MQ=255)                                                                                                                                                                                            tGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGCCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGTTAGATTCTATTCAtata                                                                                                                                                      >  2:742821/1‑90 (MQ=255)                                                                                                                                                                                                        nctgcGAGTTAATGCCGAGCAGGCCTGAAATACCTGTAGAATGCAAGTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGc          <  2:700931/217‑1 (MQ=255)                                                                                                                                                                                                                             ggCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCAACGAAAGAGATGAGTCGTCAGACATTaaaaa                                                                                            >  2:643889/1‑115 (MQ=255)                                                                                                                                                                                                                             ggCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATACATATAAACGCTCTATATACAAACAATAAAGCCACGAAAGAGATGAGTCGTCAGACATTaaaaa                                                                                            <  1:643909/115‑1 (MQ=255)                                                                                                                                                                                                                                       aCCTGTAGAGTGCAATTCCAGATCACGCGATAGATTCAATTCATATAAACGCTCTATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAGATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAAt  <  1:446126/195‑1 (MQ=255)                                                                                                                                                                                                                                                             |                                                                                                                                                                             CTCCAGTGCCATACCAGCCAACCAGGTAGGCATCATAAGCAACATCAGTATCAATATTGGTAATCTGATCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAAT  >  NC_000913/1597813‑1598237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑