Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3455276	3455895	620	34 [33]	[33] 34	[gspA]–[gspC]	[gspA], [gspC]

ATTTATAAGCATAGGGTCGATTATTTTTAATGTGAATTATTTCCATACAACTATAGTTAAAAATGGACAGATCATTAATCAACCAACAAACGCATTTCAGTCTGATTTCAGCCTTGCCGCTTTATGGCGTAACGAAAATCATGCTGGGGTAAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACTCTCCATCCAGGGCTACCTGACATCATCAAGCAGCCTGATTCAGAAAGTCAAAATGTACTCGCTGATTATATTATCGCCACGCCTATACGTGATGGAGAACAGATATACGGGCTTCGATTGAACCCTCGTAAGGGCCTCAATG  >  NC_000913/3455649‑3456175                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                        atTTATAAGCATAGGGTCGATTATTTTTAATGTGAATTATTTCCATACAACTATAGTTAAAAATGGACAGATCATTAATCAACCAACAAACGCATTTCAGTCTGATTTCAGCCTTGCCGCTTTATGGCGTAACGAAAATCATGCTGGGGTCAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCttt                                                                                                                                                                                                                                    >  1:231289/1‑301 (MQ=255)                        tttttAATGTGAATTATTTCCATACAACTATAGTTAAAAATGGACAGATCATTAATCAACCAACAAACGCATTTCAGTCTGATTTCAGCCTTGCCGCTTTATGGCGTAACGAAAATCATGCTGGGGTAAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATg                                                                                                                                                                                                                                                                             <  1:470582/237‑1 (MQ=255)                                                cAACTATAGTTAAAAATGGACAGATCATTAATCAACCAACAAACGCATTTCAGTCTGATTTCAGTCTTGCCGCTTTATGGCGTAACGAAAATCATGCTGGGGTAAAATATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGTGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGCAAATTAAATAATACCATCGt                                                                                                                                                                                     >  1:527086/1‑301 (MQ=255)                                                cAACTATAGTTAAAAATGGACAGATCATTAATCAACCAACAAACGCATTTCAGTCTGATTTCAGCCTTGCCGCTTTATGGCGTAACGAAAATCATGCTGGGGTAAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAgggg                                                                                                                                                                                                                                                                        >  2:80382/1‑218 (MQ=255)                                                cAACTATAGTTAAAAATGGACAGATCATTAATCAACCAACAAACGCATTTCAGTCTGATTTCAGCCTTGCCGCTTTATGGCGTAACGAAAATCATGCTGGGGTAAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGcc                                                                                                                                                                                                                                       <  1:80384/251‑1 (MQ=255)                                                cAACTATAGTTAAAAATGGACAGATCATTAATCAACCAACAAACGCATTTCAGTCTGATTTCAGCCTTGCCGCTTTATGGCGTAACGAAAATCATGCTGGGGTAAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGt                                                                                                                                                                                     >  1:675112/1‑301 (MQ=255)                                                                      gATCATTAATCAACCACCAAACGCATTTCAGTCTGATTTCAGCCTTGCCGCTTTATGACGTAACGAAAATCATGCTGGGGTCAAAGATGCAAATCCTGTGGCAGTTAATCAGGAAACACCTAAGCTCCCTATATCGCTTACTGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGTAGCGAACAAAAGCGATACTcc                                                                                                                                                                                                                                                   >  2:110467/1‑217 (MQ=255)                                                                        tCATTAATCAACCAACAAACGCATTTCAGTCTGATTTCAGCCTTGCCGCTTTATGGCGTAACGAAAATCATGCTTGGGTAAAAGATGCAAATCACGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGAGAGCGAAGAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGTAAAATAAATAAAACCAGCGTTGTGTTTGACACTCACGCGCAtca                                                                                                                                                             >  1:14345/1‑299 (MQ=255)                                                                        tCATTAATCAACCAACAAACGCATTTCAGTCTGATTTCAGCCTTGCCGCTTTATGGCGTAACGAAAATCATGCTGGGGTAAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACAAGAGTTGTGTTTGAAACTCACGGGCATTa                                                                                                                                                             >  1:39651/1‑301 (MQ=255)                                                                           ttAATCAACCAACAAACGCATTTCAGTCTGATTTCAGCCTTGCCGCTTTATGGCGTAACGAAAATCATGCTGGGGTAAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGa                                                                                                                                                          >  1:476754/1‑301 (MQ=255)                                                                                caaccaacAAACGCATTTCAGTCTGATTTCAGCCTTGCCGCTTTATGGCGTAACGAAAATCATGCTGGGGTAAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGACACTAACGGTCATTACGaaaaaa                                                                                                                                                     >  1:626705/1‑300 (MQ=255)                                                                                     aacaaACGCATTTCAGTCTGATTTCAGCCTTGCCGCTTTATGGCGTAACGAAAATCATGCTGGGGTAAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGATCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTg                                                                                                                                                                                                                                   >  2:260601/1‑218 (MQ=255)                                                                                          aCGCATTTCAGTCTGATTTCAGCCTTGCCGCTTTATGGCGTAACGAAAATCATGCTGGGGTAAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACTCtcca                                                                                                                                           >  1:392224/1‑301 (MQ=255)                                                                                                         aTTTCAGCCTTGCCGCTTTATGGCGTAACGAAAATCATGCTGGGGTAAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAACAGCGATACTCACTCAACGAAGCCCATGATTAAGAGCAGGGAACggtn                                                                                                                                                                                                               >  2:626774/1‑215 (MQ=255)                                                                                                                     ccGCTTTATGGCGTAACGAAAATCATGCTGGGGTAAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACTCTCCATCCAGGGCTACCTGACATCATCAagca                                                                                                                >  1:324741/1‑301 (MQ=255)                                                                                                                          ttATGGCGTAACGAAAATCATGCTGGGGTAAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACTCTCCATCCAGGGCTACCTGACATCATCAagcagc                                                                                                              >  1:45180/1‑298 (MQ=255)                                                                                                                                                   gggTAAAAGATGCAAAGCCCGTAGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATAAATGAGGTGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTTAGTCAGCGACGGAAACGTGTAATAGAACAATCAATACAACCAGCGTTGTGTTTGaaaa                                                                                                                                                                         >  2:565863/1‑213 (MQ=255)                                                                                                                                                                              ttAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTGGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACtctc                                                                                                                                             <  2:437857/215‑1 (MQ=255)                                                                                                                                                                                gaaatttgtataagcgaaagctctATAGCGCATAATGGCATTGTACTAGCATCGAATGACGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACGAAAGCGATAGTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACTCTCCATCCAGGGCTACCTGACATCATCGAGCAGCCTGATTCAGAAAGTCAAAATGTACTCGCTGATTATATTATCGCCACGCCTATAc                                                        <  1:519743/278‑1 (MQ=255)                                                                                                                                                                                aaTCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAAGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCATTGAGTCAGCGCCGGGAACGTTTAGTAGAAAAATAAATAAAACCAGCGTTGTGCTTGAAAATCACGGGCATTACGAAAAAATAACTCTCCATACAGGGCTACTTAACAGCATCAAGCAGCATGATTCAGAAAGTCCACATGTACTCGCTGATTATATTATCGACACACAAATACGTg                                                     >  1:218377/1‑301 (MQ=255)                                                                                                                                                                                          catcTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCCAATGATGAGACTTCTTCTGTCTTAATCAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCCGCGCCGGGAACGTTTATTAGTAAAATAAATAAAACCAGCGTCGTGCTCGAAACTCACGGCCATCACGAAAAAGTAACTCTCCACACAGTGCTAc                                                                                                                                >  2:177897/4‑216 (MQ=255)                                                                                                                                                                                                 actctctATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACTCTCCATCCAGGGCTACCTGACATCATCAAGCAGCCTGATTCAGAAAGTCAAAATGTACTCGCTGATTATATTATCGCCACGCCTATACGTGATGGAGAACAGAtataa                                    >  1:103933/2‑300 (MQ=255)                                                                                                                                                                                                    ctctATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACTCTCCATCCAGGGCTACCTGACATCATCAAGCAGCCTGATTCAGAAAGTCAAAATGTACTCGCTGATTATATTATCGCCACGCCTATACGTGATGGAGAACAGATATACggg                                 >  1:563715/1‑301 (MQ=255)                                                                                                                                                                                                    ctctATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTAAATTAATGGGGAGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGGCGGGAACGTTTATAAGCAAAATAAAAAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAATTAACTCTCCATCCAGTGCTACCGGAcatcaa                                                                                                                      >  2:519730/1‑215 (MQ=255)                                                                                                                                                                                                      ctATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACTCTCCATCCAGGGCTACCTGCCATCATCAAGCAGCCTGATTCAGAAAGTCAAAATGTACTCGCTGCTTATATTATCGCCACGCCTAAACGTGATGGAGAACAGATATAAggg                                 >  1:648602/1‑299 (MQ=255)                                                                                                                                                                                                                          gTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGTGAGCGAACAAAAGAGCTACTTCCTCAACGAATCCCTTGAGTCCACGCCGGGAACGTTTATTATAAAAATAAATAAAAACAGCGTTGTGTTTGAAACTCACGAGCATTACGAAAAAGTAACTCTCCATCAAGGCCTACCTGACATCATCAAGCAGCCTCATTCAGAAAGt                                                                                                >  2:674939/1‑216 (MQ=255)                                                                                                                                                                                                                               nacaTCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCATTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACTCTCCATCCAGGGCTACCTGACATCATCAAGCAGCCTGATTCAGAAAGTCAAAATg                                                                                         <  2:724160/217‑1 (MQ=255)                                                                                                                                                                                                                               cacaTCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTAGAAACTCACGTGCATCACGAAAAAGTAACTCTCCACCCAGGGCTACCTGACATCATCAAGCAGCCTGATTCAGAAAGTCAAAATGTACTCGCTGATTATATTATCGCCACGcc                                                             >  1:545357/1‑246 (MQ=255)                                                                                                                                                                                                                                 caTCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGTGCATTACGAAAAAGTAACTCTCCATCCAGGGCTACCTGACATCATCAAGCAGCCTGATTCAGAAAGTCAAAATGTa                                                                                       >  2:218767/1‑218 (MQ=255)                                                                                                                                                                                                                                 caTCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACTCTCCATCCAGGGCTACCTGACATCATCAAGCAGCCTGATTCAGAAAGTCAAAATGTACTCGCTGATTATATTATCGCCACGCCTATACGTGATGGAGAACAGATATACGGGCTTCGATTGAACCCTCGTACGGGCCTCaa    >  1:390182/1‑301 (MQ=255)                                                                                                                                                                                                                                   tCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACTCTCCATCCAGGGCTACCTGACATCATCAAGCAGCCTGATTCAGAAAGTCAAAATGTACTCGCTGATTATATTATCGCCACGCCTATACGTGATGGAGAACAGATATACGGGCTTCGATTGAACCCTCGTAAGGGCCTCCATg  >  1:576835/1‑301 (MQ=255)                                                                                                                                                                                                                                              gaCTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACTCTCCATCCAGGGCTACCTGACATCATCAAGCAGCCTGATTCAGAAAGTCAAAATGTACTCGCTGATTATATTATCGCCACGCCTATACGTGATGGAGAAc                                            >  1:647740/1‑248 (MQ=255)                                                                                                                                                                                                                                                cttcttTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACTCTCCATCCAGGGCTACCTGACATCATCAAGCAGCCTGATTCAGAAAGTCAAAATGTACTCGCTGattatatt                                                                        <  2:476742/218‑1 (MQ=255)                                                                                                                                                                                                                                                        gTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTATGAAAAAGTAACTCTCCATCCAGGGCTCCCTGACATCATCAAGCAGCCTGATTCAGAAAGTCAAAATGTACTCGCTGATTATATTATCGCCa                                                                 >  2:38305/1‑217 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                        ATTTATAAGCATAGGGTCGATTATTTTTAATGTGAATTATTTCCATACAACTATAGTTAAAAATGGACAGATCATTAATCAACCAACAAACGCATTTCAGTCTGATTTCAGCCTTGCCGCTTTATGGCGTAACGAAAATCATGCTGGGGTAAAAGATGCAAATCCCGTGGCAGTTAATCAGGAAACACCTAAGCTCTCTATAGCGCTTAATGGCATTGTACTCACATCGAATGATGAGACTTCTTTTGTCTTAATTAATGAGGGGAGCGAACAAAAGCGATACTCCCTCAACGAAGCCCTTGAGTCAGCGCCGGGAACGTTTATTAGAAAAATAAATAAAACCAGCGTTGTGTTTGAAACTCACGGGCATTACGAAAAAGTAACTCTCCATCCAGGGCTACCTGACATCATCAAGCAGCCTGATTCAGAAAGTCAAAATGTACTCGCTGATTATATTATCGCCACGCCTATACGTGATGGAGAACAGATATACGGGCTTCGATTGAACCCTCGTAAGGGCCTCAATG  >  NC_000913/3455649‑3456175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑