breseq  version 0.27.1  revision 87c22d663cc3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
MC JC	257,908	Δ776 bp		[crl]	[crl]
RA	668,742	C→G	E99Q (GAA→CAA)	rsfS ←	ribosomal silencing factor
RA	701,378	C→A	G73C (GGC→TGC)	nagC ←	N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor
RA	1,936,249	C→T	A22A (GCG→GCA)	zwf ←	glucose‑6‑phosphate 1‑dehydrogenase
RA	2,173,363	Δ2 bp	intergenic (‑1/+1)	gatC ← / ← gatC	pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
JC JC	2,375,828	IS186 (–) +4 bp	coding (132‑135/963 nt)	menC ←	O‑succinylbenzoyl‑CoA synthase
RA	2,513,351	C→A	L104M (CTG→ATG)	nupC →	nucleoside (except guanosine) transporter
RA	3,560,455	+G	intergenic (‑2/+1)	glpR ← / ← glpR	pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA	4,160,733	C→T	G20S (GGC→AGC)	sthA ←	pyridine nucleotide transhydrogenase, soluble
RA	4,160,854	C→T	intergenic (‑64/‑270)	sthA ← / → fabR	pyridine nucleotide transhydrogenase, soluble/transcriptional repressor of fabA and fabB
RA	4,183,274	A→G	N677S (AAC→AGC)	rpoB →	RNA polymerase, beta subunit
MC JC	4,233,804	1557 bp→83 bp	coding (47‑1603/1650 nt)	pgi →	glucosephosphate isomerase
RA	4,296,381	+GC	intergenic (+587/+55)	gltP → / ← yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	582755	584725	1971	59 [56]	[56] 59	[ybcY]–[ompT]	[ybcY], ybcY, tfaX, appY, [ompT]
*	*	÷	NC_000913	1465019	1465430	412	61 [58]	[56] 60	[paaY]–[ydbA]	[paaY], ynbG, [ydbA]
*	*	÷	NC_000913	1978373	1979709	1337	63 [58]	[58] 59	insB1–insA	insB1, insA
*	*	÷	NC_000913	2033455	2034102	648	60 [58]	[57] 59	[yedR]–[yedS]	[yedR], [yedS]
*	*	÷	NC_000913	2103199	2104240	1042	59 [56]	[58] 60	[wbbL]–[wbbK]	[wbbL], [wbbK]
*	*	÷	NC_000913	2785867	2786708	842	64 [55]	[58] 60	[ygaQ]	[ygaQ]
*	*	÷	NC_000913	2990586	2991401	816	60 [58]	[58] 59	[ygeF]–[ygeG]	[ygeF], ygeF, [ygeG]
*	*	÷	NC_000913	3286965	3287448	484	59 [57]	[57] 59	[agaI]–[yraH]	[agaI], [yraH]
*	*	÷	NC_000913	3423837–3424234	3424509–3424238	5–673	59 [54]	[58] 59	[rrlD]	[rrlD]
*	*	÷	NC_000913	3769369	3770211	843	59 [57]	[56] 60	[yibV]–yibU	[yibV], yibV, yibU, yibU
*	*	÷	NC_000913	3796903	3800349	3447	60 [55]	[58] 59	[waaC]–[waaY]	[waaC], waaL, waaU, waaZ, [waaY]