mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 31.1% | 147.3 / 83.3 | 110 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 48,418 | 0 | A | G | 21.3% | 287.9 / 19.9 | 145 | E217G (GAA→GGA) | kefC | potassium:proton antiporter |
| Marginal new junction evidence (lowest skew 10 of 13 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 39 (0.270) | 31/486 | 3.7 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1158504 = | 110 (0.740) | 41 (0.290) +CAGATTGGTGAATA |
27/466 | 4.1 | 28.0% | coding (636/1434 nt) | ptsG | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| ? | NC_000913 | = 1158538 | 114 (0.760) | coding (670/1434 nt) | ptsG | fused glucose‑specific PTS enzymes: IIB component/IIC component | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 32 (0.220) | 27/478 | 4.3 | 98.5% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 1 (0.010) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1096961 = | 108 (0.720) | 43 (0.430) | 11/334 | 6.0 | 36.9% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 74 (0.730) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1207790 = | 118 (0.790) | 8 (0.060) | 8/462 | 9.4 | 6.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 106 (0.760) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1096978 = | 103 (0.690) | 23 (0.150) +G |
8/492 | 9.8 | 17.3% | intergenic (+149/+587) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097519 | 118 (0.790) | intergenic (+690/+46) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1207805 | 116 (0.780) | 6 (0.040) | 6/462 | 10.3 | 5.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 104 (0.740) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4127239 = | 201 (1.350) | 5 (0.040) | 5/470 | 11.0 | 2.5% | intergenic (+14/+47) | rpmE/yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| ? | NC_000913 | 4127265 = | 192 (1.350) | intergenic (+40/+21) | rpmE/yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein | |||||
| * | ? | NC_000913 | 4321539 = | 156 (1.040) | 5 (0.030) | 4/476 | 11.7 | 3.3% | coding (158/453 nt) | phnG | ribophosphonate triphosphate synthase subunit |
| ? | NC_000913 | 4321583 = | 147 (1.020) | coding (114/453 nt) | phnG | ribophosphonate triphosphate synthase subunit | |||||
| * | ? | NC_000913 | = 224228 | NA (NA) | 4 (0.030) | 4/488 | 11.9 | NA | noncoding (458/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224234 = | NA (NA) | noncoding (464/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||