breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
JC 9,682 +AGATGA 10.8% coding (2651/2664 nt) gyrA → DNA topoisomerase (ATP‑hydrolyzing) subunit A
RA 9,710 T→C 9.1% intergenic (+15/+72) gyrA → / ← nnrD DNA topoisomerase (ATP‑hydrolyzing) subunit A/possible carbohydrate kinase
RA 9,716 T→C 8.6% intergenic (+21/+66) gyrA → / ← nnrD DNA topoisomerase (ATP‑hydrolyzing) subunit A/possible carbohydrate kinase
RA 9,719 G→A 7.2% intergenic (+24/+63) gyrA → / ← nnrD DNA topoisomerase (ATP‑hydrolyzing) subunit A/possible carbohydrate kinase
RA 9,725 G→A 7.6% intergenic (+30/+57) gyrA → / ← nnrD DNA topoisomerase (ATP‑hydrolyzing) subunit A/possible carbohydrate kinase
RA 18,223 G→A 7.5% V278I (GTT→ATT)  USA300HOU_0013 → possible membrane protein
RA 28,711 T→C 5.0% N409N (AAT→AAC)  yycH → hypothetical protein YycH
RA 33,584 C→T 5.1% intergenic (+240/‑128) sasH → / → orfX possible 5'‑nucleotidase/hypothetical protein OrfX
RA 35,814 Δ1 bp 22.1% intergenic (+45/+63) rlmH → / ← tpn hypothetical protein/IS431mec transposase
RA 35,817 A→T 22.1% intergenic (+48/+60) rlmH → / ← tpn hypothetical protein/IS431mec transposase
RA 35,850 C→T 27.8% intergenic (+81/+27) rlmH → / ← tpn hypothetical protein/IS431mec transposase
RA 35,858 T→A 32.0% intergenic (+89/+19) rlmH → / ← tpn hypothetical protein/IS431mec transposase
RA 35,876 C→T 43.5% intergenic (+107/+1) rlmH → / ← tpn hypothetical protein/IS431mec transposase
RA 35,913 C→G 25.3% S213S (TCG→TCC)  tpn ← IS431mec transposase
RA 35,940 G→A 29.7% R204R (CGC→CGT)  tpn ← IS431mec transposase
RA 35,970 T→C 53.8% E194E (GAA→GAG)  tpn ← IS431mec transposase
RA 35,997 T→C 30.0% T185T (ACA→ACG)  tpn ← IS431mec transposase
RA 36,015 C→T 29.0% R179R (AGG→AGA)  tpn ← IS431mec transposase
RA 36,087 A→G 56.7% C155C (TGT→TGC)  tpn ← IS431mec transposase
RA 36,119 C→T 27.6% V145I (GTA→ATA)  tpn ← IS431mec transposase
RA 36,124 G→A 55.3% A143V (GCT→GTT)  tpn ← IS431mec transposase
RA 36,133 A→G 28.3% V140A (GTA→GCA)  tpn ← IS431mec transposase
RA 36,161 T→C 29.4% I131V (ATT→GTT)  tpn ← IS431mec transposase
RA 36,174 T→C 28.9% K126K (AAA→AAG)  tpn ← IS431mec transposase
RA 36,269 C→T 56.9% A95T (GCA→ACA)  tpn ← IS431mec transposase
RA 36,315 G→A 56.6% Y79Y (TAC→TAT)  tpn ← IS431mec transposase
RA 36,378 C→T 82.2% L58L (TTG→TTA)  tpn ← IS431mec transposase
RA 36,413 C→T 49.4% V47I (GTC→ATC)  tpn ← IS431mec transposase
RA 36,444 C→T 38.5% R36R (AGG→AGA)  tpn ← IS431mec transposase
RA 36,471 A→G 20.4% S27S (AGT→AGC)  tpn ← IS431mec transposase
RA 36,479 T→C 8.3% T25A (ACA→GCA)  tpn ← IS431mec transposase
RA 36,501 G→A 5.8% A17A (GCC→GCT)  tpn ← IS431mec transposase
RA 36,581 C→T 20.7% intergenic (‑30/‑493) tpn ← / → USA300HOU_0028 IS431mec transposase/hypothetical protein
RA 39,653 C→A 7.2% S494I (AGT→ATT)  mecA ← penicillin binding protein 2 prime
RA 61,741 C→T 7.4% E265K (GAA→AAA)  USA300HOU_0055 ← integrase
JC 62,817 +TCAATT 100% intergenic (+82/+229) USA300HOU_0056 → / ← speG hypothetical protein/diamine N‑acetyltransferase
RA 70,101 A→T 7.0% I228N (ATT→AAT)  arcB1 ← ornithine carbamoyltransferase
RA 76,180 C→T 21.6% intergenic (+238/‑896) USA300HOU_0072 → / → USA300HOU_0075 universal stress protein/lysophospholipase
RA 76,185 G→A 15.0% intergenic (+243/‑891) USA300HOU_0072 → / → USA300HOU_0075 universal stress protein/lysophospholipase
RA 76,265 C→T 27.6% intergenic (+323/‑811) USA300HOU_0072 → / → USA300HOU_0075 universal stress protein/lysophospholipase
RA 76,295 T→C 51.6% intergenic (+353/‑781) USA300HOU_0072 → / → USA300HOU_0075 universal stress protein/lysophospholipase
RA 76,322 G→A 51.1% intergenic (+380/‑754) USA300HOU_0072 → / → USA300HOU_0075 universal stress protein/lysophospholipase
RA 76,353 G→A 46.5% intergenic (+411/‑723) USA300HOU_0072 → / → USA300HOU_0075 universal stress protein/lysophospholipase
RA 90,248 Δ1 bp 6.5% intergenic (‑1292/+1453) USA300HOU_0086 ← / ← USA300HOU_0089 hypothetical protein/hypothetical protein
RA 90,249 Δ1 bp 6.5% intergenic (‑1293/+1452) USA300HOU_0086 ← / ← USA300HOU_0089 hypothetical protein/hypothetical protein
RA 109,522 G→A 5.6% T196T (ACG→ACA)  plc → phosphatidylinositol diacylglycerol‑lyase
RA 109,868 A→C 5.3% T312P (ACG→CCG)  plc → phosphatidylinositol diacylglycerol‑lyase
RA 109,958 G→A 5.4% intergenic (+37/‑184) plc → / → USA300HOU_0109 phosphatidylinositol diacylglycerol‑lyase/staphylococcal tandem lipoprotein
RA 109,964 T→A 6.1% intergenic (+43/‑178) plc → / → USA300HOU_0109 phosphatidylinositol diacylglycerol‑lyase/staphylococcal tandem lipoprotein
RA 109,970 T→C 5.4% intergenic (+49/‑172) plc → / → USA300HOU_0109 phosphatidylinositol diacylglycerol‑lyase/staphylococcal tandem lipoprotein
RA 110,651 C→T 15.2% D170D (GAC→GAT)  USA300HOU_0109 → staphylococcal tandem lipoprotein
RA 110,660 T→A 18.8% I173I (ATT→ATA)  USA300HOU_0109 → staphylococcal tandem lipoprotein
RA 111,512 A→G 28.6% S194S (TCA→TCG)  USA300HOU_0110 → possible staphylococcal tandem lipoprotein
RA 111,516 C→A 30.5% Q196K (CAA→AAA)  USA300HOU_0110 → possible staphylococcal tandem lipoprotein
RA 111,560 T→C 9.8% R210R (CGT→CGC)  USA300HOU_0110 → possible staphylococcal tandem lipoprotein
RA 153,592 A→G 5.7% I399V (ATT→GTT)  USA300HOU_0144 → MOP superfamily multidrug/oligosaccharidyl‑lipid/polysaccharide flippase transporter
RA 153,657 T→C 8.0% A420A (GCT→GCC)  USA300HOU_0144 → MOP superfamily multidrug/oligosaccharidyl‑lipid/polysaccharide flippase transporter
RA 159,006 G→T 6.1% S441I (AGC→ATC)  deoD → MFS family major facilitator transporter, tetracycline:cation symporter
RA 166,060 C→T 5.6% S386S (AGC→AGT)  USA300HOU_0156 → hypothetical protein
RA 178,248 T→G 7.8% Y75D (TAT→GAT)  cap5E → capsular polysaccharide biosynthesis protein Cap5E
RA 181,717 T→A 5.7% G137G (GGT→GGA)  cap5H → capsular polysaccharide biosynthesis protein Cap5H
RA 181,798 T→G 6.5% G164G (GGT→GGG)  cap5H → capsular polysaccharide biosynthesis protein Cap5H
RA 182,889 C→T 7.8% L318L (CTA→TTA)  cap5I → capsular polysaccharide biosynthesis protein Cap5I
RA 184,873 T→C 5.2% Y218Y (TAT→TAC)  cap5K → capsular polysaccharide synthesis protein Cap5K
RA 188,684 G→A 5.1% R182H (CGT→CAT)  cap5O → capsular polysaccharide biosynthesis protein Cap5O
RA 209,797 T→C 5.8% V2069A (GTA→GCA)  USA300HOU_0192 → non‑ribosomal peptide synthetase
RA 211,512 T→A 5.0% intergenic (+70/+258) USA300HOU_0193 → / ← USA300HOU_0194 possible holo‑[acyl‑carrier‑protein] synthase/hypothetical membrane protein
RA 211,621 G→A 6.4% intergenic (+179/+149) USA300HOU_0193 → / ← USA300HOU_0194 possible holo‑[acyl‑carrier‑protein] synthase/hypothetical membrane protein
RA 225,063 T→A 5.3% I50I (ATT→ATA)  murQ → possible sugar phosphate isomerase
RA 238,173 T→C 6.1% I58I (ATT→ATC)  USA300HOU_0214 → oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein
RA 239,946 A→G 6.3% H256R (CAT→CGT)  rlp → RGD domain lipoprotein
RA 257,325 T→A 6.4% G16G (GGA→GGT)  USA300HOU_0230 ← response regulator
RA 264,043 C→T 6.8% P86P (CCC→CCT)  glpQ1 → possible glycerophosphodiester phosphodiesterase
RA 313,483 C→T 5.2% L220L (TTG→TTA)  USA300HOU_0279 ← hypothetical protein
RA 321,417 T→C 5.0% N166N (AAT→AAC)  bsh3 → C59 family penicillin amidase
RA 321,451 A→G 6.1% N178D (AAT→GAT)  bsh3 → C59 family penicillin amidase
RA 322,033 A→G 5.1% intergenic (+121/‑187) bsh3 → / → lytM C59 family penicillin amidase/M23 family lysostaphin
RA 322,347 A→T 7.4% Q43L (CAA→CTA)  lytM → M23 family lysostaphin
RA 323,222 G→A 6.5% intergenic (+34/+18) lytM → / ← USA300HOU_0290 M23 family lysostaphin/ABC superfamily ATP binding cassette transporter, ABC protein
RA 326,758 A→T 5.6% F277Y (TTT→TAT)  USA300HOU_0293 ← hypothetical protein
RA 329,916 G→A 5.2% L88F (CTT→TTT)  USA300HOU_0296 ← hypothetical protein
RA 340,248 T→C 6.2% N1462N (AAT→AAC)  essC → virulence protein EssC
RA 340,254 A→G 5.4% A1464A (GCA→GCG)  essC → virulence protein EssC
RA 340,266 A→G 7.2% A1468A (GCA→GCG)  essC → virulence protein EssC
RA 340,269 C→T 6.3% N1469N (AAC→AAT)  essC → virulence protein EssC
RA 340,494 A→G 5.6% I55V (ATT→GTT)  esaC → virulence protein EsaC
RA 348,494 C→T 5.4% T144M (ACG→ATG)  USA300HOU_0315 → hypothetical protein
RA 352,072 A→C 5.2% intergenic (+4/‑7) USA300HOU_0319 → / → USA300HOU_0320 hypothetical protein/hypothetical protein
RA 352,078 C→T 5.7% intergenic (+10/‑1) USA300HOU_0319 → / → USA300HOU_0320 hypothetical protein/hypothetical protein
RA 352,096 G→A 5.7% K6K (AAG→AAA)  USA300HOU_0320 → hypothetical protein
JC 353,691 Δ3 bp 5.7% intergenic (+127/‑24) USA300HOU_0322 → / → USA300HOU_0323 hypothetical protein/hypothetical membrane protein
RA 354,925 A→G 5.6% S84S (AGT→AGC)  ywcJ ← FNT family formate‑nitrite transporter
RA 354,940 A→T 5.4% I79I (ATT→ATA)  ywcJ ← FNT family formate‑nitrite transporter
RA 354,943 G→A 5.4% G78G (GGC→GGT)  ywcJ ← FNT family formate‑nitrite transporter
RA 355,168 A→G 5.0% S3S (AGT→AGC)  ywcJ ← FNT family formate‑nitrite transporter
RA 355,263 C→A 5.5% intergenic (‑87/+129) ywcJ ← / ← brnQ1 FNT family formate‑nitrite transporter/LIVCS family branched chain amino acid:cation symporter
RA 355,692 G→T 6.5% V336V (GTC→GTA)  brnQ1 ← LIVCS family branched chain amino acid:cation symporter
RA 365,528 C→T 5.1% G367D (GGT→GAT)  USA300HOU_0334 ← SSS family solute:sodium (Na+) symporter
RA 373,905 C→T 5.1% D532D (GAC→GAT)  lip1 → triacylglycerol lipase
RA 380,443 G→A 5.1% A113A (GCG→GCA)  lplA1 → lipoate‑‑protein ligase A
RA 392,622 G→A 5.7% A229A (GCG→GCA)  yhbW → possible alkanal monooxygenase (FMN‑linked)
RA 402,652 T→C 5.2% L87L (TTG→CTG)  USA300HOU_0372 → ABC superfamily ATP binding cassette transporter, ABC protein
RA 402,660 G→A 5.1% V89V (GTG→GTA)  USA300HOU_0372 → ABC superfamily ATP binding cassette transporter, ABC protein
RA 409,376 A→T 5.8% A272A (GCT→GCA)  metE ← 5‑methyltetrahydropteroyltriglutamate‑‑ homocysteine S‑methyltransferase
RA 419,854 G→A 12.2% intergenic (+72/+194) rpsR → / ← USA300HOU_0390 ribosomal protein S18/hypothetical protein
RA 433,119 T→G 5.1% intergenic (‑528/+449) tcyP ← / ← USA300HOU_0408 possible DAACS family dicarboxylate/amino acid:sodium (Na+) or proton (H+) symporter/hypothetical protein
RA 434,024 T→A 5.2% A167A (GCA→GCT)  USA300HOU_0408 ← hypothetical protein
RA 439,372 C→T 6.7% G374G (GGC→GGT)  guaB → IMP dehydrogenase
RA 453,608 T→C 5.9% L116L (TTA→CTA)  set22 → staphylococcal exotoxin
RA 464,595 A→G 6.0% K91R (AAA→AGA)  USA300HOU_0439 → hypothetical protein
RA 464,599 G→A 5.9% P92P (CCG→CCA)  USA300HOU_0439 → hypothetical protein
RA 475,163 C→T 6.1% D159D (GAC→GAT)  cobW1 → cobalamin (vitamin B12) biosynthesis protein
RA 486,048 G→A 5.1% intergenic (+1426/‑4352) USA300HOU_0463 → / → metQ hypothetical protein/ABC superfamily ATP binding cassette transporter, binding protein
RA 491,299 G→T 7.3% intergenic (+57/‑275) metQ → / → sle1 ABC superfamily ATP binding cassette transporter, binding protein/possible LysM family autolysin
RA 491,302 G→C 7.8% intergenic (+60/‑272) metQ → / → sle1 ABC superfamily ATP binding cassette transporter, binding protein/possible LysM family autolysin
RA 491,332 T→A 7.3% intergenic (+90/‑242) metQ → / → sle1 ABC superfamily ATP binding cassette transporter, binding protein/possible LysM family autolysin
RA 495,436 C→T 5.9% A228T (GCA→ACA)  yibE ← hypothetical membrane protein
RA 512,643 A→G 43.5% intergenic (+711/‑150) recR → / → rrs1 recombination protein RecR/16S ribosomal RNA
RA 534,181 C→G 6.1% intergenic (+3752/‑1973) veg → / → rplY hypothetical protein/ribosomal protein L25
RA 545,072 A→T 5.2% S131S (TCA→TCT)  yabR → hypothetical protein
RA 584,277 C→T 5.8% Y30Y (TAC→TAT)  rplJ → ribosomal protein L10
RA 604,295 T→C 6.7% intergenic (+88/‑126) araB → / → USA300HOU_0546 ribulokinase/possible UDP‑glucose 4‑epimerase
RA 612,852 A→T 5.3% A388A (GCA→GCT)  sdrC → Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrC
RA 613,998 G→A 6.4% S770S (TCG→TCA)  sdrC → Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrC
RA 614,094 T→C 13.9% S802S (AGT→AGC)  sdrC → Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrC
RA 615,441 C→G 5.0% A181A (GCC→GCG)  sdrD → Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrD
RA 615,494 A→C 5.3% D199A (GAT→GCT)  sdrD → Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrD
RA 618,351 T→C 7.5% D1151D (GAT→GAC)  sdrD → Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrD
RA 618,387 T→C 8.9% D1163D (GAT→GAC)  sdrD → Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrD
RA 618,558 T→C 7.3% S1220S (AGT→AGC)  sdrD → Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrD
RA 618,756 T→C 9.5% S1286S (AGT→AGC)  sdrD → Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrD
RA 628,481 C→A 5.3% intergenic (‑154/‑116) USA300HOU_0562 ← / → nagB hypothetical protein/glucosamine‑6‑phosphate deaminase
RA 631,293 T→A 5.2% G189G (GGT→GGA)  USA300HOU_0566 → possible phosphatase
RA 631,329 G→A 5.1% P201P (CCG→CCA)  USA300HOU_0566 → possible phosphatase
RA 631,338 T→A 5.4% I204I (ATT→ATA)  USA300HOU_0566 → possible phosphatase
RA 631,341 T→C 5.4% I205I (ATT→ATC)  USA300HOU_0566 → possible phosphatase
RA 632,109 C→G 6.2% V78V (GTC→GTG)  proP → MFS family major facilitator transporter, proline/betaine:cation symporter
RA 648,427 A→T 5.3% A90A (GCA→GCT)  mvaD → diphosphomevalonate decarboxylase
RA 668,096 G→A 5.2% A27A (GCG→GCA)  adh → alcohol dehydrogenase
RA 696,863 T→C 5.2% V277V (GTT→GTC)  mnhA1 → CPA3 family monovalent cation (K+ or Na+):proton (H+) antiporter‑3, MnhA subunit
RA 696,902 T→C 5.5% I290I (ATT→ATC)  mnhA1 → CPA3 family monovalent cation (K+ or Na+):proton (H+) antiporter‑3, MnhA subunit
RA 696,932 T→A 5.4% G300G (GGT→GGA)  mnhA1 → CPA3 family monovalent cation (K+ or Na+):proton (H+) antiporter‑3, MnhA subunit
RA 696,941 G→A 6.1% A303A (GCG→GCA)  mnhA1 → CPA3 family monovalent cation (K+ or Na+):proton (H+) antiporter‑3, MnhA subunit
RA 696,944 C→T 5.8% Y304Y (TAC→TAT)  mnhA1 → CPA3 family monovalent cation (K+ or Na+):proton (H+) antiporter‑3, MnhA subunit
RA 696,962 T→A 5.2% L310L (CTT→CTA)  mnhA1 → CPA3 family monovalent cation (K+ or Na+):proton (H+) antiporter‑3, MnhA subunit
RA 707,909 A→T 5.1% M1M (TTG→ATG) † mntB ← ABC superfamily ATP binding cassette transporter, ABC protein
RA 732,682 T→C 6.6% Y235Y (TAT→TAC)  USA300HOU_0679 → hypothetical protein
RA 736,210 C→T 6.8% T231I (ACA→ATA)  vraE → ABC superfamily ATP binding cassette transporter, membrane protein
RA 748,209 T→C 6.3% A68A (GCT→GCC)  USA300HOU_0694 → LysR family transcriptional regulator
RA 770,883 T→C 5.7% intergenic (+69/‑184) ebsC → / → fruR possible transcriptional regulator/DeoR family transcriptional regulator
RA 792,603 C→T 5.0% N543N (AAC→AAT)  ltaS → possible phosphatidylglycerol‑‑membrane‑oligosaccharide glycerophosphotransferase
RA 795,968 C→T 6.3% R296R (CGC→CGT)  recQ1 → ATP‑dependent helicase RecQ
RA 803,539 A→G 6.7% intergenic (+47/+31) USA300HOU_0750 → / ← dtpT hypothetical protein/POT family proton (H+)‑dependent oligopeptide transporter
RA 840,445 C→G 5.3% A226A (GCC→GCG)  uvrA → excision endonuclease subunit UvrA
RA 841,258 A→G 6.0% L497L (TTA→TTG)  uvrA → excision endonuclease subunit UvrA
RA 841,492 T→G 7.3% G575G (GGT→GGG)  uvrA → excision endonuclease subunit UvrA
RA 841,564 A→C 7.1% E599D (GAA→GAC)  uvrA → excision endonuclease subunit UvrA
RA 864,720 G→A 5.8% E12E (GAG→GAA)  est → carboxylesterase
RA 864,726 T→C 5.7% G14G (GGT→GGC)  est → carboxylesterase
RA 864,745 C→T 6.9% L21L (CTA→TTA)  est → carboxylesterase
RA 864,753 T→A 5.9% G23G (GGT→GGA)  est → carboxylesterase
RA 864,777 T→A 7.3% V31V (GTT→GTA)  est → carboxylesterase
RA 864,828 G→A 5.7% P48P (CCG→CCA)  est → carboxylesterase
RA 879,923 A→G 5.3% intergenic (+101/‑240) USA300HOU_0822 → / → nuc hypothetical protein/micrococcal nuclease
RA 885,761 T→C 5.3% T101A (ACT→GCT)  yisU ← LysE family L‑lysine exporter
RA 888,334 T→A 5.5% V219E (GTA→GAA)  aroD → 3‑dehydroquinate dehydratase
RA 914,471 G→A 5.1% E161E (GAG→GAA)  sufS → selenocysteine lyase
RA 917,327 T→G 6.4% intergenic (+86/‑104) sufB → / → USA300HOU_0876 ABC superfamily ATP binding cassette transporter, membrane protein/hypothetical protein
RA 922,773 G→A 5.9% E159K (GAA→AAA)  yunD → bifunctional 5‑nucleotidase/2,3‑cyclic phosphodiesterase
RA 922,777 T→A 5.8% L160H (CTT→CAT)  yunD → bifunctional 5‑nucleotidase/2,3‑cyclic phosphodiesterase
RA 922,800 T→A 6.0% L168I (TTA→ATA)  yunD → bifunctional 5‑nucleotidase/2,3‑cyclic phosphodiesterase
RA 937,158 T→A 5.3% intergenic (+65/‑1952) yumB → / → USA300HOU_0903 NADH dehydrogenase/NhaC family sodium:proton (Na+:H+) antiporter
RA 938,905 G→A 6.6% intergenic (+1812/‑205) yumB → / → USA300HOU_0903 NADH dehydrogenase/NhaC family sodium:proton (Na+:H+) antiporter
RA 940,348 T→C 5.5% R413R (CGT→CGC)  USA300HOU_0903 → NhaC family sodium:proton (Na+:H+) antiporter
RA 946,579 A→C 5.4% F488L (TTT→TTG)  mnhA2 ← CPA3 family monovalent cation:proton (H+) antiporter‑3 subunit A
RA 950,088 T→A 6.7% intergenic (+875/‑280) prsA1 → / → yqiG peptidylprolyl isomerase/flavin reductase
RA 950,093 T→A 6.8% intergenic (+880/‑275) prsA1 → / → yqiG peptidylprolyl isomerase/flavin reductase
RA 950,098 T→A 7.4% intergenic (+885/‑270) prsA1 → / → yqiG peptidylprolyl isomerase/flavin reductase
RA 967,498 C→G 5.3% V522V (GTC→GTG)  rexA → ATP‑dependent nuclease Rex subunit A
RA 985,066 T→A 6.9% intergenic (‑131/‑164) USA300HOU_0940 ← / → fabH1 hypothetical protein/3‑oxoacyl‑[acyl‑carrier‑protein] synthase
RA 985,069 A→T 7.0% intergenic (‑134/‑161) USA300HOU_0940 ← / → fabH1 hypothetical protein/3‑oxoacyl‑[acyl‑carrier‑protein] synthase
RA 1,038,235 A→T 5.0% intergenic (‑4652/‑3054) USA300HOU_0983 ← / → USA300HOU_0984 competence protein/glycosyltransferase
RA 1,039,416 A→C 5.8% intergenic (‑5833/‑1873) USA300HOU_0983 ← / → USA300HOU_0984 competence protein/glycosyltransferase
RA 1,039,417 T→G 5.9% intergenic (‑5834/‑1872) USA300HOU_0983 ← / → USA300HOU_0984 competence protein/glycosyltransferase
RA 1,043,713 C→T 6.3% L8L (CTA→TTA)  USA300HOU_0985 → possible iron (Fe3+) ABC superfamily ATP binding cassette transporter, binding protein
RA 1,049,317 G→A 5.9% A325A (GCG→GCA)  menD → 2‑oxoglutarate decarboxylase
RA 1,049,332 G→A 5.9% R330R (AGG→AGA)  menD → 2‑oxoglutarate decarboxylase
RA 1,052,385 C→G 6.0% A341A (GCG→GCC)  sspB ← C47 family staphopain B
RA 1,052,403 G→A 5.5% D335D (GAC→GAT)  sspB ← C47 family staphopain B
RA 1,052,436 G→A 6.1% I324I (ATC→ATT)  sspB ← C47 family staphopain B
RA 1,072,831 A→T 6.2% G121G (GGT→GGA)  folD ← bifunctional methylenetetrahydrofolate dehydrogenase (NADP(+))/methenyltetrahydrofolate cyclohydrolase
RA 1,088,197 G→A 7.1% intergenic (‑515/‑355) USA300HOU_1021 ← / → USA300HOU_1022 hypothetical membrane protein/hypothetical membrane protein
RA 1,152,738 A→T 5.5% I329L (ATA→TTA)  dinB → DNA‑directed DNA polymerase IV beta subunit
RA 1,166,243 A→T 5.5% intergenic (‑537/‑135) USA300HOU_1092 ← / → USA300HOU_1093 hypothetical protein/hypothetical membrane protein
RA 1,172,863 T→G 6.3% N191T (AAC→ACC)  USA300HOU_1103 ← exotoxin
RA 1,182,264 A→T 6.3% intergenic (‑283/‑81) USA300HOU_t0016 ← / → USA300HOU_1112 tRNA‑Arg/antibacterial protein
RA 1,190,794 A→G 8.1% A167A (GCA→GCG)  mraY → phospho‑N‑acetylmuramoyl‑pentapeptide‑ transferase
RA 1,218,734 A→C 6.0% intergenic (+225/+38) USA300HOU_1145 → / ← fbpA possible 3‑demethylubiquinone‑9 3‑methyltransferase/fibrinogen‑binding protein
RA 1,231,411 A→G 7.0% D19G (GAT→GGT)  prpC → possible PP2C protein phosphatase
RA 1,231,557 C→G 6.3% Q68E (CAA→GAA)  prpC → possible PP2C protein phosphatase
RA 1,250,301 C→G 6.8% T24R (ACA→AGA)  ftsY → Sec family Type I general secretory pathway protein signal recognition particle protein FtsY
RA 1,272,132 G→C 5.0% intergenic (+28/‑38) clpQ → / → clpY T01 family HslV component of HsIUV peptidase/T01 family HslU component of HsIUV peptidase
RA 1,299,428 A→G 5.6% K363K (AAA→AAG)  rnjB → beta‑lactamase
RA 1,299,677 C→T 7.3% G446G (GGC→GGT)  rnjB → beta‑lactamase
RA 1,299,755 T→A 9.1% V472V (GTT→GTA)  rnjB → beta‑lactamase
RA 1,306,583 C→T 5.4% P216S (CCA→TCA)  fabG → short chain dehydrogenase
RA 1,306,597 T→C 5.9% S220S (AGT→AGC)  fabG → short chain dehydrogenase
RA 1,315,762 A→C 7.9% A348A (GCA→GCC)  porA → ferredoxin dehydrogenase alpha subunit
RA 1,319,376 A→G 7.5% I504V (ATA→GTA)  miaB → 2‑methylthioadenine synthetase
RA 1,331,236 T→A 6.9% S188T (TCT→ACT)  USA300HOU_1233 → possible S33 family lysophophospholipase
RA 1,338,620 G→A 8.2% S21S (TCG→TCA)  USA300HOU_1241 → hypothetical protein
RA 1,338,681 A→G 8.0% R42G (AGA→GGA)  USA300HOU_1241 → hypothetical protein
RA 1,339,817 C→A 13.6% intergenic (+149/‑145) USA300HOU_1242 → / → USA300HOU_1243 hypothetical protein/hypothetical protein
RA 1,340,479 A→T 6.6% intergenic (+311/‑390) USA300HOU_1243 → / → USA300HOU_1244 hypothetical protein/hypothetical protein
RA 1,341,749 G→T 5.6% intergenic (+157/‑355) USA300HOU_1245 → / → USA300HOU_1246 hypothetical protein/hypothetical protein
RA 1,341,933 G→A 6.1% intergenic (+341/‑171) USA300HOU_1245 → / → USA300HOU_1246 hypothetical protein/hypothetical protein
RA 1,341,936 C→A 6.4% intergenic (+344/‑168) USA300HOU_1245 → / → USA300HOU_1246 hypothetical protein/hypothetical protein
RA 1,346,067 T→C 6.6% intergenic (‑211/+259) USA300HOU_1259 ← / ← ltaE hypothetical protein/threonine aldolase
RA 1,346,086 C→T 5.9% intergenic (‑230/+240) USA300HOU_1259 ← / ← ltaE hypothetical protein/threonine aldolase
RA 1,346,192 C→T 6.5% intergenic (‑336/+134) USA300HOU_1259 ← / ← ltaE hypothetical protein/threonine aldolase
RA 1,349,021 A→T 6.8% P382P (CCA→CCT)  cls → cardiolipin synthetase
RA 1,349,027 A→T 6.9% V384V (GTA→GTT)  cls → cardiolipin synthetase
RA 1,353,873 A→C 5.8% intergenic (+66/+77) nucA → / ← USA300HOU_1269 micrococcal nuclease A/hypothetical protein
RA 1,354,358 T→C 5.9% I149M (ATA→ATG)  USA300HOU_1269 ← hypothetical protein
RA 1,372,042 A→T 6.1% V524V (GTA→GTT)  tkt → transketolase
RA 1,390,631 T→G 6.3% intergenic (+115/+13) parC → / ← USA300HOU_1289 DNA topoisomerase (ATP‑hydrolyzing) ParC/hypothetical protein
RA 1,411,832 T→C 5.4% H280H (CAT→CAC)  femA → methicillin resistance factor FemA
RA 1,416,458 A→T 100% I216N (ATT→AAT)  oppD ← oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein
RA 1,421,615 C→G 5.1% intergenic (+51/+89) oppD → / ← phoU M3 family oligoendopeptidase F/possible PnaS family phosphate:sodium (Na+) symporter
RA 1,436,095 G→C 6.2% G197A (GGT→GCT)  hipO → M20D subfamily hippurate hydrolase
RA 1,436,255 T→A 6.5% T250T (ACT→ACA)  hipO → M20D subfamily hippurate hydrolase
RA 1,450,291 G→A 8.1% D273D (GAC→GAT)  odhB ← dihydrolipoyllysine‑residue succinyltransferase
RA 1,451,633 C→T 8.2% A763A (GCG→GCA)  sucA ← oxoglutarate dehydrogenase (succinyl‑transferring) E1
RA 1,454,646 T→C 5.3% A305A (GCA→GCG)  arlS ← sensor histidine kinase
RA 1,458,321 T→C 5.2% T14A (ACA→GCA)  USA300HOU_1354 ← phosphatase
RA 1,469,100 G→A 6.2% V16V (GTG→GTA)  ypdP → hypothetical protein
RA 1,481,732 C→T 6.0% T6764T (ACG→ACA)  ebh ← extracellular matrix binding protein
RA 1,481,750 C→T 5.2% A6758A (GCG→GCA)  ebh ← extracellular matrix binding protein
RA 1,489,391 C→T 7.3% P4211P (CCG→CCA)  ebh ← extracellular matrix binding protein
RA 1,503,111 A→G 7.6% I234I (ATT→ATC)  norB ← MFS family major facilitator transporter
RA 1,504,140 T→A 6.1% R384R (CGA→CGT)  USA300HOU_1374 ← APC family amino acid‑polyamine‑organocation transporter
RA 1,504,143 T→C 6.2% E383E (GAA→GAG)  USA300HOU_1374 ← APC family amino acid‑polyamine‑organocation transporter
RA 1,509,367 C→T 7.1% E1008K (GAG→AAG)  ypbR ← hypothetical protein
RA 1,512,101 C→T 8.6% T96T (ACG→ACA)  ypbR ← hypothetical protein
RA 1,513,930 A→T 100% L413F (TTA→TTT)  USA300HOU_1379 → hypothetical membrane protein
RA 1,514,978 T→C 6.1% G274G (GGA→GGG)  ypsC ← site‑specific DNA‑methyltransferase (adenine‑specific)
RA 1,517,372 C→A 7.8% D115Y (GAT→TAT)  USA300HOU_1385 ← hypothetical protein
RA 1,521,608 G→A 6.6% intergenic (+548/+18) pbp2 → / ← USA300HOU_1389 penicillin‑binding protein 2/hypothetical protein
RA 1,526,104 C→T 6.5% S613S (TCG→TCA)  dnaQ ← DNA‑directed DNA polymerase III epsilon subunit
RA 1,538,398 T→G 6.1% G168G (GGA→GGC)  aroC ← chorismate synthase
RA 1,542,361 C→T 5.5% V46V (GTG→GTA)  USA300HOU_1409 ← hypothetical protein
RA 1,615,309 A→T 6.4% intergenic (‑39/+10) xerD ← / ← fur integrase/recombinase XerD/Fur family transcriptional regulator
RA 1,616,268 C→A 5.9% V50L (GTG→TTG)  nudF ← ADP‑ribose diphosphatase
RA 1,627,378 G→T 5.9% I365I (ATC→ATA)  pgd ← phosphogluconate dehydrogenase (decarboxylating)
RA 1,646,189 G→C 100% A155G (GCA→GGA)  pepP ← M24B family Xaa‑Pro dipeptidase
RA 1,664,318 T→C 5.9% I30V (ATA→GTA)  pbp3 ← penicillin‑binding protein 3
RA 1,704,548 A→T 5.4% D89E (GAT→GAA)  yqeI ← hypothetical protein
RA 1,708,413 C→T 5.9% T43I (ACA→ATA)  USA300HOU_1602 → hypothetical membrane protein
RA 1,731,859 A→G 6.0% Q20R (CAA→CGA)  yvbT → dehydrogenase
RA 1,735,527 T→A 5.1% A236A (GCA→GCT)  hypB ← hypothetical protein
RA 1,740,388 G→A 6.8% L230L (CTA→TTA)  lytH ← N‑acetylmuramoyl‑L‑alanine amidase
RA 1,746,065 A→T 5.6% V301D (GTC→GAC)  recJ ← recombination protein RecJ
RA 1,749,170 T→A 5.1% V93V (GTA→GTT)  secDF ← RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter
RA 1,789,169 A→T 5.6% V117V (GTT→GTA)  gapB ← glyceraldehyde‑3‑phosphate dehydrogenase (phosphorylating)
RA 1,814,162 G→A 6.2% V360V (GTC→GTT)  dnaE2 ← DNA‑directed DNA polymerase III alpha subunit
RA 1,825,570 A→T 7.4% D70E (GAT→GAA)  ahpC2 ← possible peroxiredoxin
RA 1,862,048 A→G 5.3% V709A (GTT→GCT)  sftA ← DNA translocase
RA 1,868,200 C→T 5.1% V132I (GTT→ATT)  ytnP ← possible metal‑dependent hydrolase
RA 1,929,796 T→C 19.7% intergenic (‑879/‑289) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,797 G→A 19.4% intergenic (‑880/‑288) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,799 C→A 19.4% intergenic (‑882/‑286) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,804 A→G 20.3% intergenic (‑887/‑281) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,812 G→A 30.5% intergenic (‑895/‑273) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,843 Δ1 bp 38.9% intergenic (‑926/‑242) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,848 C→A 39.4% intergenic (‑931/‑237) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,861 T→C 41.1% intergenic (‑944/‑224) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,862:1 +T 33.7% intergenic (‑945/‑223) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,864 A→T 6.6% intergenic (‑947/‑221) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,865 A→C 33.4% intergenic (‑948/‑220) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,866 G→T 39.1% intergenic (‑949/‑219) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,867 G→T 40.2% intergenic (‑950/‑218) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,870 A→C 40.0% intergenic (‑953/‑215) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,872 G→A 39.6% intergenic (‑955/‑213) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,873 C→A 40.0% intergenic (‑956/‑212) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,875 T→C 40.2% intergenic (‑958/‑210) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,917 C→T 35.9% intergenic (‑1000/‑168) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,918 A→G 36.4% intergenic (‑1001/‑167) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,925 T→A 31.5% intergenic (‑1008/‑160) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,928 T→A 31.5% intergenic (‑1011/‑157) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,930 T→A 31.6% intergenic (‑1013/‑155) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,941 A→T 23.3% intergenic (‑1024/‑144) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,929,946 G→A 17.9% intergenic (‑1029/‑139) USA300HOU_1794 ← / → USA300HOU_1796 hypothetical protein/hypothetical protein
RA 1,935,301 C→A 5.5% intergenic (‑54/+1092) USA300HOU_1798 ← / ← hsdS2 hypothetical protein/type I site‑specific deoxyribonuclease specificity subunit
RA 1,942,634 T→C 5.1% K58K (AAA→AAG)  splC ← S1B family serine protease SplC
RA 1,963,502 C→T 7.6% T453T (ACG→ACA)  hemG ← protoporphyrinogen oxidase
RA 1,967,670 T→C 5.5% intergenic (+2/+122) traP → / ← ecsB RNAIII‑activating protein TRAP/ABC superfamily ATP binding cassette transporter, membrane protein
RA 1,970,814 G→C 5.1% intergenic (+3/‑730) USA300HOU_1831 → / → USA300HOU_1832 hypothetical protein/hypothetical membrane protein
RA 1,970,932 A→T 5.2% intergenic (+121/‑612) USA300HOU_1831 → / → USA300HOU_1832 hypothetical protein/hypothetical membrane protein
RA 1,997,013 C→G 5.5% noncoding (61/93 nt) USA300HOU_t0037 ← tRNA‑Ser
RA 1,997,022 G→C 8.2% noncoding (52/93 nt) USA300HOU_t0037 ← tRNA‑Ser
RA 2,005,544 G→A 5.7% S37S (AGC→AGT)  pdxB ← D‑3‑phosphoglycerate dehydrogenase
RA 2,010,363 C→T 100% C146Y (TGT→TAT)  ygaD ← ABC superfamily ATP binding cassette transporter, membrane protein
RA 2,012,683 G→A 5.5% H97Y (CAT→TAT)  mutY ← A/G‑specific DNA glycosylase
RA 2,016,103 G→A 6.2% Y207Y (TAC→TAT)  rgpD ← teichoic acid ABC superfamily ATP binding cassette transporter, ABC protein
RA 2,027,805 C→A 5.2% V48F (GTT→TTT)  vraS ← sensor histidine kinase VraS
RA 2,070,643 T→C 6.7% A64A (GCA→GCG)  ykgB ← hypothetical protein
RA 2,079,751 C→T 5.0% Q139Q (CAG→CAA)  bcrA ← GntR family transcriptional regulator
RA 2,086,482 G→T 7.1% intergenic (‑372/+17) USA300HOU_1945 ← / ← USA300HOU_1946 hypothetical protein/hypothetical protein
RA 2,086,484 A→T 7.1% intergenic (‑374/+15) USA300HOU_1945 ← / ← USA300HOU_1946 hypothetical protein/hypothetical protein
RA 2,086,485 A→T 8.1% intergenic (‑375/+14) USA300HOU_1945 ← / ← USA300HOU_1946 hypothetical protein/hypothetical protein
RA 2,086,487 A→C 7.3% intergenic (‑377/+12) USA300HOU_1945 ← / ← USA300HOU_1946 hypothetical protein/hypothetical protein
RA 2,091,346 T→C 5.8% G85G (GGA→GGG)  USA300HOU_1954 ← hypothetical bacteriophage protein
RA 2,091,517 A→G 5.9% N28N (AAT→AAC)  USA300HOU_1954 ← hypothetical bacteriophage protein
RA 2,110,877 G→A 7.3% intergenic (‑123/+109) USA300HOU_1973 ← / ← USA300HOU_1974 hypothetical protein/hypothetical bacteriophage protein
RA 2,110,918 T→C 7.7% intergenic (‑164/+68) USA300HOU_1973 ← / ← USA300HOU_1974 hypothetical protein/hypothetical bacteriophage protein
RA 2,119,129 T→C 6.4% M373V (ATG→GTG)  USA300HOU_1992 ← hypothetical protein
RA 2,119,277 C→T 8.0% T323T (ACG→ACA)  USA300HOU_1992 ← hypothetical protein
RA 2,119,307 C→T 5.6% T313T (ACG→ACA)  USA300HOU_1992 ← hypothetical protein
RA 2,119,319 T→C 5.6% A309A (GCA→GCG)  USA300HOU_1992 ← hypothetical protein
RA 2,119,322 T→A 5.3% V308V (GTA→GTT)  USA300HOU_1992 ← hypothetical protein
RA 2,119,345 A→G 6.0% L301L (TTA→CTA)  USA300HOU_1992 ← hypothetical protein
RA 2,119,346 T→C 6.2% E300E (GAA→GAG)  USA300HOU_1992 ← hypothetical protein
RA 2,119,364 G→T 5.7% I294I (ATC→ATA)  USA300HOU_1992 ← hypothetical protein
RA 2,119,733 A→G 5.9% I171I (ATT→ATC)  USA300HOU_1992 ← hypothetical protein
RA 2,119,757 C→T 5.7% K163K (AAG→AAA)  USA300HOU_1992 ← hypothetical protein
RA 2,120,542 T→C 5.1% K78R (AAA→AGA)  USA300HOU_1994 ← hypothetical bacteriophage protein
RA 2,120,582 C→T 8.9% V65I (GTT→ATT)  USA300HOU_1994 ← hypothetical bacteriophage protein
RA 2,120,625 A→G 8.5% D50D (GAT→GAC)  USA300HOU_1994 ← hypothetical bacteriophage protein
RA 2,120,639 A→G 9.0% L46L (TTA→CTA)  USA300HOU_1994 ← hypothetical bacteriophage protein
RA 2,120,664 G→A 9.8% D37D (GAC→GAT)  USA300HOU_1994 ← hypothetical bacteriophage protein
RA 2,120,669 G→A 8.4% L36L (CTA→TTA)  USA300HOU_1994 ← hypothetical bacteriophage protein
RA 2,120,673 A→G 7.9% V34V (GTT→GTC)  USA300HOU_1994 ← hypothetical bacteriophage protein
RA 2,120,676 C→T 7.7% M33I (ATG→ATA)  USA300HOU_1994 ← hypothetical bacteriophage protein
RA 2,120,685 G→A 8.1% S30S (AGC→AGT)  USA300HOU_1994 ← hypothetical bacteriophage protein
RA 2,120,691 C→T 6.3% A28A (GCG→GCA)  USA300HOU_1994 ← hypothetical bacteriophage protein
RA 2,120,697 T→C 6.1% K26K (AAA→AAG)  USA300HOU_1994 ← hypothetical bacteriophage protein
RA 2,140,625 T→G 5.4% E488A (GAA→GCA)  groEL ← chaperone GroEL
RA 2,145,638 A→G 5.1% intergenic (+172/‑189) USA300HOU_2028 → / → orf5 possible nitroreductase/amidohydrolase
RA 2,160,679 A→T 5.4% intergenic (‑3432/‑49) USA300HOU_2042 ← / → mutS2 hypothetical membrane protein/possible DNA mismatch repair protein MutS
RA 2,189,877 G→T 7.2% R100R (CGA→AGA)  alr2 ← alanine racemase
RA 2,250,701 G→A 5.4% G361G (GGC→GGT)  hmrA ← M20D subfamily peptidase
RA 2,257,029 C→A 5.4% intergenic (‑118/+82) dps ← / ← yuxK Dps family stress protein/hypothetical protein
RA 2,257,030 C→T 5.1% intergenic (‑119/+81) dps ← / ← yuxK Dps family stress protein/hypothetical protein
RA 2,257,055 C→T 7.0% intergenic (‑144/+56) dps ← / ← yuxK Dps family stress protein/hypothetical protein
RA 2,257,078 A→G 6.3% intergenic (‑167/+33) dps ← / ← yuxK Dps family stress protein/hypothetical protein
RA 2,279,705 G→A 100% intergenic (+1373/+6659) mtlD → / ← glmM mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase
RA 2,280,118 A→T 6.2% intergenic (+1786/+6246) mtlD → / ← glmM mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase
RA 2,282,111 G→T 7.4% intergenic (+3779/+4253) mtlD → / ← glmM mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase
RA 2,283,526 A→C 5.1% intergenic (+5194/+2838) mtlD → / ← glmM mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase
RA 2,284,721 T→G 5.3% intergenic (+6389/+1643) mtlD → / ← glmM mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase
RA 2,284,800 T→C 6.8% intergenic (+6468/+1564) mtlD → / ← glmM mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase
RA 2,291,888 G→A 8.7% K359K (AAG→AAA)  USA300HOU_2155 → transposase
RA 2,292,012 T→C 7.5% *401R (TGA→CGA)  USA300HOU_2155 → transposase
RA 2,292,077 G→A 12.4% intergenic (+63/‑73) USA300HOU_2155 → / → USA300HOU_2156 transposase/hypothetical protein
RA 2,292,140 G→A 5.8% intergenic (+126/‑10) USA300HOU_2155 → / → USA300HOU_2156 transposase/hypothetical protein
RA 2,313,472 G→A 6.6% D206D (GAC→GAT)  rhbC ← possible Iuc family aerobactin synthesis protein
RA 2,330,500 A→G 5.4% F161F (TTT→TTC)  lacD ← tagatose‑bisphosphate aldolase
RA 2,330,506 T→A 5.2% P159P (CCA→CCT)  lacD ← tagatose‑bisphosphate aldolase
RA 2,330,512 A→G 5.5% D157D (GAT→GAC)  lacD ← tagatose‑bisphosphate aldolase
RA 2,330,698 T→A 5.2% G95G (GGA→GGT)  lacD ← tagatose‑bisphosphate aldolase
RA 2,337,959 C→T 5.8% intergenic (‑125/‑119) adhR ← / → USA300HOU_2196 possible MerR family transcriptional regulator/hypothetical protein
RA 2,338,218 G→A 5.2% A47A (GCG→GCA)  USA300HOU_2196 → hypothetical protein
RA 2,338,816 A→G 5.2% K194R (AAA→AGA)  hysA → hyaluronate lyase
RA 2,338,908 G→A 6.4% D225N (GAT→AAT) ‡ hysA → hyaluronate lyase
RA 2,338,910 T→A 6.4% D225E (GAT→GAA) ‡ hysA → hyaluronate lyase
RA 2,343,438 C→T 7.6% intergenic (+114/+250) USA300HOU_2200 → / ← alsD hypothetical protein/acetolactate decarboxylase
RA 2,346,247 G→T 5.0% intergenic (‑154/‑94) alsS ← / → USA300HOU_2203 acetolactate synthase/hypothetical protein
RA 2,372,413 C→G 7.0% intergenic (‑5530/+28) rpmC ← / ← pbuG ribosomal protein L29/NCS2 family nucleobase:cation symporter‑2
RA 2,372,419 C→T 8.4% intergenic (‑5536/+22) rpmC ← / ← pbuG ribosomal protein L29/NCS2 family nucleobase:cation symporter‑2
RA 2,378,942 C→T 5.7% S182N (AGT→AAT)  USA300HOU_2240 ← AEC family malonate efflux carrier
RA 2,379,107 A→C 5.2% V127G (GTT→GGT)  USA300HOU_2240 ← AEC family malonate efflux carrier
RA 2,379,121 T→C 8.6% G122G (GGA→GGG)  USA300HOU_2240 ← AEC family malonate efflux carrier
RA 2,379,394 T→C 7.9% K31K (AAA→AAG)  USA300HOU_2240 ← AEC family malonate efflux carrier
RA 2,379,661 A→T 5.2% I21L (ATA→TTA)  USA300HOU_2241 → hypothetical protein
RA 2,394,482 T→A 7.6% D27V (GAT→GTT)  moaB ← molybdopterin cofactor biosynthesis protein MoaB
RA 2,398,692 T→C 5.3% I188I (ATT→ATC)  fdhD → formate dehydrogenase accessory protein FdhD
RA 2,403,072 A→T 5.1% intergenic (‑209/+5) fhuD ← / ← USA300HOU_2267 iron (Fe+3) ABC superfamily ATP binding cassette transporter, binding protein/acyl‑CoA dehydrogenase
RA 2,413,174 T→C 6.3% L522L (TTA→TTG)  USA300HOU_2279 ← transcriptional regulator
RA 2,413,192 C→A 6.7% S516S (TCG→TCT) ‡ USA300HOU_2279 ← transcriptional regulator
RA 2,413,194 A→C 6.9% S516A (TCG→GCG) ‡ USA300HOU_2279 ← transcriptional regulator
RA 2,413,260 A→T 6.4% S494T (TCT→ACT)  USA300HOU_2279 ← transcriptional regulator
RA 2,413,272 T→A 6.5% I490F (ATT→TTT)  USA300HOU_2279 ← transcriptional regulator
RA 2,421,323 T→C 5.5% D131D (GAT→GAC)  gyaR → (R)‑2‑hydroxyacid dehydrogenase
RA 2,426,760 A→T 5.7% G446G (GGT→GGA)  USA300HOU_2291 ← formate dehydrogenase alpha subunit
RA 2,428,236 A→G 6.2% intergenic (‑139/+463) USA300HOU_2291 ← / ← lytR formate dehydrogenase alpha subunit/transcriptional regulator
RA 2,444,143 G→A 5.2% I257I (ATC→ATT)  USA300HOU_2306 ← NhaC family sodium:proton (Na+:H) antiporter
RA 2,475,761 T→C 6.0% T165T (ACA→ACG)  tcaA ← teicoplanin resistance protein TcaA
RA 2,479,526 A→G 6.6% G108G (GGT→GGC)  htrB ← hemin ABC superfamily ATP binding cassette transporter, ABC protein
RA 2,524,206 A→C 7.3% A142A (GCT→GCG)  nirB ← nitrite reductase (NAD(P)H) large subunit
RA 2,524,238 G→T 6.9% L132I (CTT→ATT)  nirB ← nitrite reductase (NAD(P)H) large subunit
RA 2,528,070 G→T 6.8% intergenic (‑936/+317) USA300HOU_2385 ← / ← adcA FNT family formate‑nitrite transporter/ABC superfamily ATP binding cassette transporter, binding protein
RA 2,528,079 G→C 7.2% intergenic (‑945/+308) USA300HOU_2385 ← / ← adcA FNT family formate‑nitrite transporter/ABC superfamily ATP binding cassette transporter, binding protein
RA 2,528,110 G→T 8.3% intergenic (‑976/+277) USA300HOU_2385 ← / ← adcA FNT family formate‑nitrite transporter/ABC superfamily ATP binding cassette transporter, binding protein
RA 2,532,298 A→T 100% T15T (ACA→ACT)  murN → FemAB family peptidoglycan biosynthesis protein
RA 2,542,070 G→A 5.3% intergenic (+329/‑171) USA300HOU_2401 → / → hlgA immunoglobulin G‑binding protein SBI/gamma‑hemolysin component A
RA 2,559,032 T→A 6.2% V146V (GTT→GTA)  bcr → MFS family major facilitator transporter, bicyclomycin:cation symporter
RA 2,559,830 A→G 7.4% intergenic (+24/+99) bcr → / ← USA300HOU_2421 MFS family major facilitator transporter, bicyclomycin:cation symporter/hypothetical protein
RA 2,559,831 G→A 7.3% intergenic (+25/+98) bcr → / ← USA300HOU_2421 MFS family major facilitator transporter, bicyclomycin:cation symporter/hypothetical protein
RA 2,559,840 T→G 9.1% intergenic (+34/+89) bcr → / ← USA300HOU_2421 MFS family major facilitator transporter, bicyclomycin:cation symporter/hypothetical protein
RA 2,559,841 C→A 8.9% intergenic (+35/+88) bcr → / ← USA300HOU_2421 MFS family major facilitator transporter, bicyclomycin:cation symporter/hypothetical protein
RA 2,559,850 T→C 9.0% intergenic (+44/+79) bcr → / ← USA300HOU_2421 MFS family major facilitator transporter, bicyclomycin:cation symporter/hypothetical protein
RA 2,559,851 C→T 8.7% intergenic (+45/+78) bcr → / ← USA300HOU_2421 MFS family major facilitator transporter, bicyclomycin:cation symporter/hypothetical protein
RA 2,565,219 C→A 5.3% I449I (ATC→ATA)  nhaK → CPA1 family monovalent cation:proton (H+) antiporter‑1
RA 2,590,449 C→T 5.5% Y31Y (TAC→TAT)  USA300HOU_2452 → hypothetical protein
RA 2,590,473 G→A 5.6% P39P (CCG→CCA)  USA300HOU_2452 → hypothetical protein
RA 2,596,746 T→C 5.8% T252T (ACA→ACG)  nikA ← oligopeptide ABC superfamily ATP binding cassette transporter, binding protein
RA 2,614,089 A→G 5.2% N194N (AAT→AAC)  USA300HOU_2478 ← lipoprotein
RA 2,614,095 T→C 5.2% L192L (TTA→TTG)  USA300HOU_2478 ← lipoprotein
RA 2,614,104 C→T 5.2% K189K (AAG→AAA)  USA300HOU_2478 ← lipoprotein
RA 2,614,110 T→G 5.3% S187S (TCA→TCC)  USA300HOU_2478 ← lipoprotein
RA 2,620,750 A→T 5.7% intergenic (+47/‑97) USA300HOU_2483 → / → USA300HOU_2484 hypothetical protein/hypothetical membrane protein
RA 2,622,662 A→G 5.9% Y3Y (TAT→TAC)  USA300HOU_2485 ← MFS family major facilitator transporter, cation symporter
RA 2,622,711:1 +C 5.4% intergenic (‑41/+3995) USA300HOU_2485 ← / ← sarT MFS family major facilitator transporter, cation symporter/staphylococcal accessory regulator T
RA 2,627,279 A→T 6.1% intergenic (‑214/‑108) sarT ← / → sarU staphylococcal accessory regulator T/staphylococcal accessory regulator U
RA 2,653,179 C→T 5.8% L584L (CTA→TTA) ‡ fbp → fructose‑bisphosphatase
RA 2,653,181 A→G 5.5% L584L (CTA→CTG) ‡ fbp → fructose‑bisphosphatase
RA 2,653,199 T→A 5.4% G590G (GGT→GGA)  fbp → fructose‑bisphosphatase
RA 2,654,169 C→T 5.8% G144G (GGC→GGT)  USA300HOU_2507 → hypothetical membrane protein
RA 2,654,172 T→A 5.9% G145G (GGT→GGA)  USA300HOU_2507 → hypothetical membrane protein
RA 2,654,178 C→T 6.4% T147T (ACC→ACT)  USA300HOU_2507 → hypothetical membrane protein
RA 2,654,193 G→A 5.5% A152A (GCG→GCA)  USA300HOU_2507 → hypothetical membrane protein
RA 2,668,042 A→G 6.3% Y50Y (TAT→TAC)  USA300HOU_2523 ← transcriptional regulator
RA 2,668,363 G→A 5.0% intergenic (‑172/‑738) USA300HOU_2523 ← / → yicL transcriptional regulator/DMT superfamily drug/metabolite transporter
RA 2,690,959 A→G 5.9% L560L (TTA→CTA)  USA300HOU_2546 ← RND superfamily resistance‑nodulation‑cell division:proton (H+) antiporter
RA 2,690,960 T→C 5.8% T559T (ACA→ACG)  USA300HOU_2546 ← RND superfamily resistance‑nodulation‑cell division:proton (H+) antiporter
RA 2,696,558 T→C 7.5% intergenic (+110/‑130) USA300HOU_2551 → / → copA hypothetical protein/P‑ATPase superfamily P‑type ATPase copper (Cu2+) transporter
RA 2,696,559 T→C 7.6% intergenic (+111/‑129) USA300HOU_2551 → / → copA hypothetical protein/P‑ATPase superfamily P‑type ATPase copper (Cu2+) transporter
RA 2,696,979 G→A 6.7% D98N (GAC→AAC)  copA → P‑ATPase superfamily P‑type ATPase copper (Cu2+) transporter
RA 2,701,484 A→G 5.1% D125D (GAT→GAC)  mtnE ← aminotransferase
RA 2,721,481 T→C 10.9% L198S (TTA→TCA)  USA300HOU_2575 → hydrolase
RA 2,721,513 A→G 9.2% N209D (AAT→GAT)  USA300HOU_2575 → hydrolase
RA 2,725,352 A→T 5.9% intergenic (‑58/+276) ynzC ← / ← ynzC hypothetical protein/hypothetical protein
RA 2,726,571 C→T 5.4% M1M (ATG→ATA) † USA300HOU_2581 ← hypothetical protein
RA 2,726,585 T→C 5.3% intergenic (‑12/+330) USA300HOU_2581 ← / ← USA300HOU_2582 hypothetical protein/hypothetical protein
RA 2,752,055 G→A 5.2% F283F (TTC→TTT)  betB ← betaine‑aldehyde dehydrogenase
RA 2,772,254 T→G 5.8% S351S (TCT→TCG)  phoB → alkaline phosphatase
RA 2,775,041 A→G 6.6% D715D (GAT→GAC)  clfB ← clumping factor B
RA 2,797,717 Δ1 bp 5.2% intergenic (+5/+262) acmB → / ← USA300HOU_2645 possible N‑acetylmuramoyl‑L‑alanine amidase/possible isochorismatase hydrolase
RA 2,797,718 Δ1 bp 5.2% intergenic (+6/+261) acmB → / ← USA300HOU_2645 possible N‑acetylmuramoyl‑L‑alanine amidase/possible isochorismatase hydrolase
RA 2,797,730 T→C 5.5% intergenic (+18/+249) acmB → / ← USA300HOU_2645 possible N‑acetylmuramoyl‑L‑alanine amidase/possible isochorismatase hydrolase
RA 2,797,788 T→C 5.6% intergenic (+76/+191) acmB → / ← USA300HOU_2645 possible N‑acetylmuramoyl‑L‑alanine amidase/possible isochorismatase hydrolase
RA 2,803,218 A→G 5.6% F166F (TTT→TTC)  gtf1 ← possible glycosyltransferase
RA 2,831,977 G→T 11.4% Q230K (CAA→AAA)  lip ← triacylglycerol lipase
RA 2,867,125 A→G 6.8% L257L (TTA→CTA)  noc ← possible transcriptional regulator
RA 2,870,578 G→A 5.2% intergenic (‑46/+21) gidA ← / ← mnmE glucose inhibited division protein A/GTP‑binding protein

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 62771 =24 (0.270)7 (0.080) 3/240 NT 34.7% intergenic (+36/+275) USA300HOU_0056/speG hypothetical protein/diamine N‑acetyltransferase
?CP000730 62827 = 4 (0.050)intergenic (+92/+219) USA300HOU_0056/speG hypothetical protein/diamine N‑acetyltransferase
* ? CP000730 = 39970172 (0.810)5 (0.060) 4/236 NT 7.0% intergenic (+9/+83) USA300HOU_0366/tatC OFeT family oxidase‑dependent iron (Fe2+) transporter/Tat family twin arginine targeting transporter TatC
?CP000730 = 399706 68 (0.840)intergenic (+14/+78) USA300HOU_0366/tatC OFeT family oxidase‑dependent iron (Fe2+) transporter/Tat family twin arginine targeting transporter TatC
* ? CP000730 512620 =112 (1.260)69 (1.130)
+40 bp		 50/178 NT 47.2% intergenic (+688/‑173) recR/rrs1 recombination protein RecR/16S ribosomal RNA
?CP000730 1998278 = NA (NA)intergenic (‑6/+5) USA300HOU_t0050/rrf4 tRNA‑Val/5S ribosomal RNA
* ? CP000730 514644 =NA (NA)11 (0.130)
+TGG		 3/252 NT 84.9% intergenic (+312/‑62) rrs1/rrl1 16S ribosomal RNA/23S ribosomal RNA
?CP000730 558945 = 2 (0.020)intergenic (+158/‑12) USA300HOU_t0012/rrl2 tRNA‑Ile/23S ribosomal RNA
* ? CP000730 = 515946NA (NA)4 (0.050) 3/244 NT NA noncoding (1241/2921 nt) rrl1 23S ribosomal RNA
?CP000730 = 515981 NA (NA)noncoding (1276/2921 nt) rrl1 23S ribosomal RNA
* ? CP000730 613921 =116 (1.310)6 (0.070) 4/252 NT 5.3% coding (2233/2844 nt) sdrC Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrC
?CP000730 = 618408 103 (1.190)coding (3510/4146 nt) sdrD Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrD
* ? CP000730 = 76003979 (0.890)10 (0.130) 8/230 NT 12.2% intergenic (+13/+114) cydC/USA300HOU_0709 ABC superfamily ATP binding cassette transporter, ABC protein/possible MarR family transcriptional regulator
?CP000730 = 760055 74 (0.940)intergenic (+29/+98) cydC/USA300HOU_0709 ABC superfamily ATP binding cassette transporter, ABC protein/possible MarR family transcriptional regulator
* ? CP000730 = 80193487 (0.980)5 (0.060)
+C		 3/256 NT 5.5% intergenic (+175/+449) USA300HOU_0748/dgkA1 hypothetical protein/possible diacylglycerol kinase
?CP000730 = 2145702 86 (0.970)intergenic (+236/‑125) USA300HOU_2028/orf5 possible nitroreductase/amidohydrolase
* ? CP000730 830841 =91 (1.030)4 (0.050) 4/234 NT 5.0% intergenic (+10/‑404) raiA/secA1 possible ribosome‑associated inhibitor protein Y/Sec family Type I general secretory pathway preprotein translocase subunit SecA
?CP000730 830871 = 68 (0.850)intergenic (+40/‑374) raiA/secA1 possible ribosome‑associated inhibitor protein Y/Sec family Type I general secretory pathway preprotein translocase subunit SecA
* ? CP000730 = 88538950 (0.560)5 (0.060) 4/232 NT 9.3% intergenic (+18/+55) gpmA1/yisU phosphoglycerate mutase/LysE family L‑lysine exporter
?CP000730 = 885408 52 (0.650)intergenic (+37/+36) gpmA1/yisU phosphoglycerate mutase/LysE family L‑lysine exporter
* ? CP000730 893176 =88 (0.990)7 (0.090) 6/234 NT 8.6% intergenic (+177/‑73) USA300HOU_0846/metN possible thioredoxin/ABC superfamily ATP binding cassette transporter, ABC protein
?CP000730 893212 = 69 (0.860)intergenic (+213/‑37) USA300HOU_0846/metN possible thioredoxin/ABC superfamily ATP binding cassette transporter, ABC protein
* ? CP000730 = 92039076 (0.860)4 (0.050) 4/230 NT 5.9% coding (39/135 nt) USA300HOU_0880 hypothetical protein
?CP000730 = 920428 60 (0.760)coding (1/135 nt) USA300HOU_0880 hypothetical protein
* ? CP000730 = 93247186 (0.970)7 (0.090) 7/234 NT 8.0% intergenic (+17/+246) dltD/nifU D‑alanine transfer protein DltD/possible NifU family protein
?CP000730 = 932493 84 (1.050)intergenic (+39/+224) dltD/nifU D‑alanine transfer protein DltD/possible NifU family protein
* ? CP000730 940816 =83 (0.940)5 (0.060) 4/246 NT 5.6% coding (372/375 nt) comA hypothetical protein
?CP000730 940879 = 90 (1.070)coding (1151/1155 nt) USA300HOU_0905 hypothetical protein
* ? CP000730 1072168 =94 (1.060)5 (0.060) 3/256 NT 5.5% intergenic (‑640/+165) iraE/folD possible chitinase/bifunctional methylenetetrahydrofolate dehydrogenase (NADP(+))/methenyltetrahydrofolate cyclohydrolase
?CP000730 2716787 = 79 (0.900)intergenic (+95/+55) ynzC/USA300HOU_2569 hypothetical protein/possible lactoylglutatione lyase
* ? CP000730 1129293 =77 (0.870)6 (0.070) 5/242 NT 7.8% intergenic (+71/‑256) USA300HOU_1055/USA300HOU_1056 hypothetical membrane protein/hypothetical protein
?CP000730 1129331 = 69 (0.830)intergenic (+109/‑218) USA300HOU_1055/USA300HOU_1056 hypothetical membrane protein/hypothetical protein
* ? CP000730 = 120532376 (0.860)35 (0.560)
+38 bp		 7/182 NT 38.0% intergenic (+459/‑365) yfiE/lspA possible lactoylglutathione lyase/A8 family signal peptidase II
?CP000730 2478252 = 86 (0.970)intergenic (+139/+932) USA300HOU_2340/htrB hypothetical membrane protein/hemin ABC superfamily ATP binding cassette transporter, ABC protein
* ? CP000730 1380211 =58 (0.650)4 (0.050) 3/234 NT 7.4% intergenic (+2308/‑867) sbcC/acnA exodeoxyribonuclease SbcC/aconitate hydratase
?CP000730 1380259 = 48 (0.600)intergenic (+2356/‑819) sbcC/acnA exodeoxyribonuclease SbcC/aconitate hydratase
* ? CP000730 = 138022255 (0.620)4 (0.050) 4/234 NT 7.6% intergenic (+2319/‑856) sbcC/acnA exodeoxyribonuclease SbcC/aconitate hydratase
?CP000730 = 1380246 48 (0.600)intergenic (+2343/‑832) sbcC/acnA exodeoxyribonuclease SbcC/aconitate hydratase
* ? CP000730 1575673 =81 (0.910)7 (0.080) 5/248 NT 8.2% coding (1844/6201 nt) hlgB possible bacteriophage tail protein
?CP000730 1575710 = 78 (0.920)coding (1807/6201 nt) hlgB possible bacteriophage tail protein
* ? CP000730 = 167678877 (0.870)5 (0.060) 5/254 NT 6.2% intergenic (‑894/‑75) USA300HOU_1565/glyS hypothetical protein/glycine‑‑tRNA ligase
?CP000730 = 1676835 75 (0.860)intergenic (‑941/‑28) USA300HOU_1565/glyS hypothetical protein/glycine‑‑tRNA ligase
* ? CP000730 = 170955855 (0.620)6 (0.070) 4/244 NT 10.2% intergenic (‑97/+365) sem/USA300HOU_1604 enterotoxin/hypothetical protein
?CP000730 = 1709579 54 (0.640)intergenic (‑118/+344) sem/USA300HOU_1604 enterotoxin/hypothetical protein
* ? CP000730 1822865 =93 (1.050)5 (0.060) 5/240 NT 5.6% intergenic (+186/+60) USA300HOU_1697/ackA possible universal stress protein/acetate kinase
?CP000730 1822909 = 83 (1.010)intergenic (+230/+16) USA300HOU_1697/ackA possible universal stress protein/acetate kinase
* ? CP000730 = 184347853 (0.600)3 (0.040) 3/240 NT 5.4% intergenic (‑162/‑220) tyrS/sgtA tyrosine‑‑tRNA ligase/possible transglycosylase
?CP000730 = 1843483 55 (0.670)intergenic (‑167/‑215) tyrS/sgtA tyrosine‑‑tRNA ligase/possible transglycosylase
* ? CP000730 = 187861474 (0.840)4 (0.050) 4/222 NT 5.4% intergenic (+73/+44) ytfP/fmtB1 possible flavoprotein/cell surface anchored protein
?CP000730 = 1878633 77 (1.010)intergenic (+92/+25) ytfP/fmtB1 possible flavoprotein/cell surface anchored protein
* ? CP000730 = 192035881 (0.910)5 (0.060) 4/250 NT 6.2% coding (968/1002 nt) menC possible o‑succinylbenzoic acid (OSB) synthetase
?CP000730 = 1920382 73 (0.850)coding (944/1002 nt) menC possible o‑succinylbenzoic acid (OSB) synthetase
* ? CP000730 1994322 =NA (NA)3 (0.040) 3/246 NT 25.9% intergenic (‑429/‑64) USA300HOU_1854/USA300HOU_1855 hypothetical protein/IS1181 transposase
?CP000730 1994387 = 9 (0.100)coding (2/1362 nt) USA300HOU_1855 IS1181 transposase
* ? CP000730 1998448 =NA (NA)5 (0.060) 5/246 NT NA intergenic (‑52/+23) rrf4/rrl3 5S ribosomal RNA/23S ribosomal RNA
?CP000730 1998463 = NA (NA)intergenic (‑67/+8) rrf4/rrl3 5S ribosomal RNA/23S ribosomal RNA
* ? CP000730 2008942 =88 (0.990)4 (0.050) 4/230 NT 5.4% intergenic (+70/+121) ygaE/ygaD hypothetical membrane protein/ABC superfamily ATP binding cassette transporter, membrane protein
?CP000730 2008991 = 63 (0.800)intergenic (+119/+72) ygaE/ygaD hypothetical membrane protein/ABC superfamily ATP binding cassette transporter, membrane protein
* ? CP000730 2053094 =80 (0.900)6 (0.070) 5/242 NT 7.9% intergenic (‑113/+59) pcrB/yerC PcrB family protein/possible Trp repressor
?CP000730 2053141 = 64 (0.770)intergenic (‑160/+12) pcrB/yerC PcrB family protein/possible Trp repressor
* ? CP000730 = 21219780 (0.000)3 (0.040) 3/244 NT 100% coding (132/177 nt) USA300HOU_1999 hypothetical bacteriophage protein
?CP000730 = 2122008 NA (NA)coding (102/177 nt) USA300HOU_1999 hypothetical bacteriophage protein
* ? CP000730 2248208 =83 (0.940)6 (0.070) 6/248 NT 7.2% intergenic (+2/+128) coaA/USA300HOU_2120 possible pantothenate kinase/hypothetical protein
?CP000730 2248263 = 74 (0.870)intergenic (+57/+73) coaA/USA300HOU_2120 possible pantothenate kinase/hypothetical protein
* ? CP000730 2252658 =94 (1.060)5 (0.060) 4/246 NT 5.5% intergenic (+94/+58) luxS/USA300HOU_2124 S‑ribosylhomocysteine lyase/hypothetical membrane protein
?CP000730 2252704 = 82 (0.970)intergenic (+140/+12) luxS/USA300HOU_2124 S‑ribosylhomocysteine lyase/hypothetical membrane protein
* ? CP000730 2336425 =69 (0.780)8 (0.100) 8/236 NT 12.0% intergenic (‑145/+75) USA300HOU_2192/npdA hypothetical protein/possible aldo/keto reductase
?CP000730 2336465 = 54 (0.670)intergenic (‑185/+35) USA300HOU_2192/npdA hypothetical protein/possible aldo/keto reductase
* ? CP000730 2361955 =103 (1.160)6 (0.070) 6/240 NT 6.1% coding (351/1293 nt) secY1 Sec family Type I general secretory pathway preprotein translocase SecY
?CP000730 2361978 = 90 (1.090)coding (328/1293 nt) secY1 Sec family Type I general secretory pathway preprotein translocase SecY
* ? CP000730 2388283 =75 (0.850)4 (0.050) 3/224 NT 5.5% intergenic (+18/+84) USA300HOU_2247/USA300HOU_2248 MFS family major facilitator transporter/hypothetical protein
?CP000730 2388362 = 73 (0.950)intergenic (+97/+5) USA300HOU_2247/USA300HOU_2248 MFS family major facilitator transporter/hypothetical protein
* ? CP000730 2533537 =104 (1.170)5 (0.060) 4/240 NT 5.1% intergenic (+33/+64) murN/tcyC FemAB family peptidoglycan biosynthesis protein/ABC superfamily ATP binding cassette transporter, ABC protein
?CP000730 2533595 = 89 (1.080)intergenic (+91/+6) murN/tcyC FemAB family peptidoglycan biosynthesis protein/ABC superfamily ATP binding cassette transporter, ABC protein
* ? CP000730 = 254340083 (0.940)5 (0.060) 5/240 NT 5.8% intergenic (+5/‑373) USA300HOU_2403/hlgC hypothetical protein/gamma hemolysin component C
?CP000730 = 2543418 86 (1.040)intergenic (+23/‑355) USA300HOU_2403/hlgC hypothetical protein/gamma hemolysin component C
* ? CP000730 2661788 =88 (0.990)5 (0.060) 5/226 NT 6.8% intergenic (‑181/‑140) USA300HOU_2514/USA300HOU_2515 HAD superfamily hydrolase/ABC superfamily ATP binding cassette transporter, ABC protein
?CP000730 2661832 = 60 (0.770)intergenic (‑225/‑96) USA300HOU_2514/USA300HOU_2515 HAD superfamily hydrolase/ABC superfamily ATP binding cassette transporter, ABC protein
* ? CP000730 = 277411585 (0.960)6 (0.070) 4/244 NT 6.8% coding (256/762 nt) estA tributyrin esterase EstA
?CP000730 = 2774122 85 (1.010)coding (249/762 nt) estA tributyrin esterase EstA