breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	6,332	C→A	8.0%	R17R (CGG→CGT)	trmE ←	GTPase
RA	6,339	T→A	7.1%	Q15L (CAG→CTG)	trmE ←	GTPase
RA	6,346	T→G	8.8%	T13P (ACG→CCG)	trmE ←	GTPase
RA	26,837:1	+A	8.1%	intergenic (+33/+152)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	26,844	A→T	10.0%	intergenic (+40/+145)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	27,581	C→T	11.7%	intergenic (‑428/+18)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	27,584	A→G	11.3%	intergenic (‑431/+15)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	32,567	G→T	7.5%	A56S (GCA→TCA)	PP_5422 →	hypothetical protein
RA	58,747	T→A	9.6%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	9.6%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,766	C→T	10.4%	intergenic (‑677/+11)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	66,371	G→A	5.3%	G477S (GGT→AGT)	betA‑I →	choline dehydrogenase
RA	68,340	G→T	16.5%	intergenic (+28/+147)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,342	A→T	17.0%	intergenic (+30/+145)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,344	A→C	16.9%	intergenic (+32/+143)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	82,095	T→A	7.5%	intergenic (+72/+56)	PP_0071 → / ← qor‑I	hypothetical protein/quinone oxidoreductase
RA	82,096	C→G	7.5%	intergenic (+73/+55)	PP_0071 → / ← qor‑I	hypothetical protein/quinone oxidoreductase
RA	82,099	T→A	7.5%	intergenic (+76/+52)	PP_0071 → / ← qor‑I	hypothetical protein/quinone oxidoreductase
RA	82,104	G→T	7.8%	intergenic (+81/+47)	PP_0071 → / ← qor‑I	hypothetical protein/quinone oxidoreductase
RA	104,876	G→C	12.1%	P345P (CCG→CCC)	PP_0099 →	hypothetical protein
RA	109,959	A→C	5.4%	intergenic (+22/‑22)	PP_0103 → / → ctaD	cytochrome c oxidase subunit 2/cytochrome c oxidase subunit 1
RA	126,115	A→G	7.0%	intergenic (+25/+25)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	126,116	C→T	5.9%	intergenic (+26/+24)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	155,543	G→T	8.4%	intergenic (‑248/+35)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	155,546	A→C	8.6%	intergenic (‑251/+32)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	162,281	A→T	7.7%	intergenic (‑315/+59)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	162,282	A→T	7.7%	intergenic (‑316/+58)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	167,292	C→A	11.4%	intergenic (‑386/+34)	pntAA ← / ← gcdR	pyridine nucleotide transhydrogenase subunit alpha/gcdH transcriptional regulator
RA	181,943	C→T	15.1%	noncoding (52/120 nt)	PP_5SB →	5S ribosomal RNA
RA	191,912	Δ1 bp	7.0%	coding (1606/2157 nt)	paxB ←	toxin secretion ATP‑binding protein
RA	191,916:1	+G	7.1%	coding (1602/2157 nt)	paxB ←	toxin secretion ATP‑binding protein
RA	191,924	C→T	7.4%	V532I (GTC→ATC)	paxB ←	toxin secretion ATP‑binding protein
RA	195,559	C→A	26.8%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	7.1%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	7.0%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	48.1%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	195,724	A→G	9.6%	V410V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	195,732	A→C	8.0%	N413T (AAC→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	14.0%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	14.9%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	17.6%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	13.2%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	196,795	G→C	6.2%	T767T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	6.0%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	14.1%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	11.2%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	14.7%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	17.8%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	10.7%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	12.3%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	199,681	G→C	6.4%	V1729V (GTG→GTC)	PP_0168 →	putative surface adhesion protein
RA	202,309	C→G	9.6%	V2605V (GTC→GTG)	PP_0168 →	putative surface adhesion protein
RA	204,976	G→C	10.5%	V3494V (GTG→GTC)	PP_0168 →	putative surface adhesion protein
RA	205,404	T→A	7.7%	L3637Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	206,064	T→A	8.1%	L3857Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	219,777	C→A	6.0%	P8428Q (CCA→CAA)	PP_0168 →	putative surface adhesion protein
RA	258,642	A→G	7.8%	K59R (AAG→AGG)	PP_0207 →	nitrate ABC transporter substrate‑binding protein
RA	284,587	T→A	17.3%	intergenic (+33/+30)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	284,588	T→A	18.6%	intergenic (+34/+29)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	289,943	C→A	6.6%	intergenic (+26/‑140)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,945	G→C	6.8%	intergenic (+28/‑138)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,947	T→G	6.8%	intergenic (+30/‑136)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	322,135	G→A	25.3%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,142	T→C	22.8%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	326,067	C→A	6.6%	*556Y (TAG→TAT)	PP_0269 ←	glutamate synthase large subunit
RA	326,070	T→G	6.2%	A555A (GCA→GCC)	PP_0269 ←	glutamate synthase large subunit
RA	337,812	A→G	27.3%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,819:1	+A	20.0%	intergenic (‑66/+63)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,822	A→C	20.1%	intergenic (‑69/+60)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,825	C→G	19.7%	intergenic (‑72/+57)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,828	G→T	18.8%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,830	Δ1 bp	18.4%	intergenic (‑77/+52)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,839	C→T	15.8%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	343,610	T→A	11.0%	intergenic (‑163/‑77)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,611	G→C	11.1%	intergenic (‑164/‑76)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,612	T→A	11.1%	intergenic (‑165/‑75)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	344,035	A→G	14.5%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,044	Δ1 bp	19.0%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,048:1	+T	18.0%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	352,543	T→C	7.3%	L93P (CTG→CCG)	hisF →	imidazole glycerol phosphate synthase subunit HisF
RA	370,553	C→T	6.1%	Q11* (CAG→TAG) ‡	dgcA →	dimethylglycine dehydrogenase subunit
RA	370,554	A→G	6.0%	Q11R (CAG→CGG) ‡	dgcA →	dimethylglycine dehydrogenase subunit
RA	384,786	C→G	8.4%	R421G (CGC→GGC)	PP_0320 →	methyl‑accepting chemotaxis transducer
RA	384,790	A→T	7.1%	N422I (AAT→ATT)	PP_0320 →	methyl‑accepting chemotaxis transducer
RA	384,794	C→G	7.5%	A423A (GCC→GCG)	PP_0320 →	methyl‑accepting chemotaxis transducer
RA	388,725	T→A	8.0%	L198Q (CTG→CAG)	soxB →	sarcosine oxidase subunit beta
RA	401,360:1	+G	6.2%	coding (943/1059 nt)	PP_0334 →	transposase
RA	401,401	C→A	5.3%	I328I (ATC→ATA)	PP_0334 →	transposase
RA	401,938	C→T	7.4%	R197R (CGG→CGA)	PP_0335 ←	glutathione S‑transferase family protein
RA	407,407	G→C	8.1%	P201A (CCG→GCG)	aceF ←	AceF‑S‑acetyldihydrolipoate
RA	407,409	G→C	7.9%	A200G (GCG→GGG)	aceF ←	AceF‑S‑acetyldihydrolipoate
RA	407,414	A→T	7.7%	A198A (GCT→GCA)	aceF ←	AceF‑S‑acetyldihydrolipoate
RA	413,107	C→G	8.9%	A686A (GCC→GCG)	glnE →	glutamate‑ammonia‑ligase adenylyltransferase
RA	413,108	C→G	7.9%	R687G (CGC→GGC)	glnE →	glutamate‑ammonia‑ligase adenylyltransferase
RA	430,702	G→C	8.1%	Q539E (CAG→GAG)	PP_0354 ←	CBS domain‑containing protein
RA	430,708	T→C	7.9%	K537E (AAG→GAG)	PP_0354 ←	CBS domain‑containing protein
RA	430,709	G→A	7.7%	L536L (CTC→CTT)	PP_0354 ←	CBS domain‑containing protein
RA	432,996	A→T	10.0%	intergenic (+18/+29)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,997	A→T	10.0%	intergenic (+19/+28)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,998	A→T	10.0%	intergenic (+20/+27)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	443,910	T→C	5.9%	L24L (TTG→CTG)	bioD →	dethiobiotin synthetase
RA	466,444	A→C	6.6%	D148A (GAC→GCC)	PP_0385 →	serine acetyltransferase
RA	466,447	T→A	6.4%	I149N (ATT→AAT)	PP_0385 →	serine acetyltransferase
RA	466,450	G→T	6.3%	G150V (GGC→GTC)	PP_0385 →	serine acetyltransferase
RA	467,101	A→G	9.1%	intergenic (‑31/+22)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	467,104	C→T	9.8%	intergenic (‑34/+19)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	468,467	A→G	5.3%	C831C (TGT→TGC)	PP_0386 ←	sensory box protein
RA	471,069	T→C	7.3%	intergenic (‑110/+18)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	471,070	G→A	8.2%	intergenic (‑111/+17)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	473,350	G→T	9.1%	A546A (GCC→GCA)	dnaG ←	DNA primase
RA	483,767	G→T	7.1%	V225V (GTC→GTA)	yeaG ←	protein kinase
RA	484,691	C→T	5.9%	intergenic (‑250/+33)	yeaG ← / ← glpE	protein kinase/thiosulfate sulfurtransferase GlpE
RA	484,695	G→C	5.9%	intergenic (‑254/+29)	yeaG ← / ← glpE	protein kinase/thiosulfate sulfurtransferase GlpE
RA	484,699	A→G	5.9%	intergenic (‑258/+25)	yeaG ← / ← glpE	protein kinase/thiosulfate sulfurtransferase GlpE
RA	503,828	Δ1 bp	12.7%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,834	A→T	12.5%	intergenic (+34/‑117)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,835	A→T	12.5%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,840:1	+C	12.5%	intergenic (+40/‑111)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,852	C→T	8.9%	intergenic (+52/‑99)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	524,352	G→C	12.5%	intergenic (+216/‑600)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,355	G→C	12.3%	intergenic (+219/‑597)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	536,282	C→T	13.9%	noncoding (179/190 nt)	PP_mr06 ←	P27 ncRNA
RA	536,283	A→G	13.9%	noncoding (178/190 nt)	PP_mr06 ←	P27 ncRNA
RA	536,392	T→G	8.7%	noncoding (69/190 nt)	PP_mr06 ←	P27 ncRNA
RA	536,395	C→A	8.5%	noncoding (66/190 nt)	PP_mr06 ←	P27 ncRNA
RA	537,461	T→A	8.2%	noncoding (54/66 nt)	PP_mr07 →	P26 ncRNA
RA	537,464	T→A	7.8%	noncoding (57/66 nt)	PP_mr07 →	P26 ncRNA
RA	541,440	A→G	6.1%	Q1272R (CAG→CGG)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	541,443	C→T	6.0%	P1273L (CCG→CTG)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	546,893	G→T	8.5%	G81C (GGC→TGC)	rpsG →	30S ribosomal protein S7
RA	564,380:1	+A	14.6%	intergenic (+29/‑144)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	564,385	Δ1 bp	14.9%	intergenic (+34/‑139)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	564,396	T→C	8.9%	intergenic (+45/‑128)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	589,856	A→G	5.4%	intergenic (‑1208/‑24)	PP_0498 ← / → PP_0500	hypothetical protein/dTDP‑4‑rhamnose reductase‑like protein
RA	591,082	G→A	6.1%	R109H (CGC→CAC)	PP_0501 →	NAD‑dependent epimerase/dehydratase family protein
RA	591,085	T→C	6.1%	V110A (GTG→GCG)	PP_0501 →	NAD‑dependent epimerase/dehydratase family protein
RA	591,706	C→G	10.9%	intergenic (+17/+14)	PP_0501 → / ← PP_0502	NAD‑dependent epimerase/dehydratase family protein/hypothetical protein
RA	596,487	T→G	6.5%	D127A (GAC→GCC)	PP_0507 ←	ABC transporter ATP‑binding protein
RA	605,124	G→A	6.8%	R145H (CGC→CAC)	thiL →	thiamin monophosphate kinase
RA	605,129	A→T	6.5%	S147C (AGC→TGC)	thiL →	thiamin monophosphate kinase
RA	605,134	T→C	6.7%	G148G (GGT→GGC)	thiL →	thiamin monophosphate kinase
RA	624,537	T→G	5.7%	K125Q (AAG→CAG)	PP_0537 ←	transcriptional regulator
RA	643,952	C→G	100%	M19I (ATG→ATC)	acoB ←	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit beta
RA	646,275	T→A	11.2%	intergenic (‑178/‑106)	PP_0556 ← / → acoR	acetoin catabolism protein/acetoin catabolism regulatory protein
RA	646,991	C→A	6.4%	A204D (GCC→GAC)	acoR →	acetoin catabolism regulatory protein
RA	648,250	A→T	8.5%	intergenic (+16/+75)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,290	A→C	8.4%	intergenic (+56/+35)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,292	A→T	8.5%	intergenic (+58/+33)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,294	G→T	9.1%	intergenic (+60/+31)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,883	C→T	5.3%	A266A (GCG→GCA)	accC ←	acetyl‑CoA carboxylase biotin carboxylase subunit
RA	668,266	G→T	5.5%	F87L (TTC→TTA) ‡	PP_0571 ←	membrane protein
RA	668,267	A→C	5.6%	F87C (TTC→TGC) ‡	PP_0571 ←	membrane protein
RA	673,782	C→T	6.3%	L110L (CTG→CTA)	PP_0575 ←	membrane protein
RA	697,206	T→C	7.2%	intergenic (+130/‑621)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,217	T→C	11.4%	intergenic (+141/‑610)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,228	C→G	13.2%	intergenic (+152/‑599)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,231	C→G	12.8%	intergenic (+155/‑596)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,242	G→A	8.4%	intergenic (+166/‑585)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,253	G→A	6.7%	intergenic (+177/‑574)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,725	A→G	54.7%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	713,087	C→G	6.6%	L25V (CTG→GTG)	lspA →	lipoprotein signal peptidase
RA	713,091	Δ1 bp	6.5%	coding (77/531 nt)	lspA →	lipoprotein signal peptidase
RA	713,108:1	+A	6.7%	coding (94/531 nt)	lspA →	lipoprotein signal peptidase
RA	713,112	C→G	6.4%	T33S (ACC→AGC)	lspA →	lipoprotein signal peptidase
RA	733,648	A→T	6.9%	intergenic (+19/‑28)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,649	A→T	5.7%	intergenic (+20/‑27)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,650	A→T	5.8%	intergenic (+21/‑26)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	734,562	C→T	5.5%	G253D (GGC→GAC)	ndh ←	NADH dehydrogenase
RA	743,423	C→T	8.1%	intergenic (+99/+175)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,433	G→A	6.6%	intergenic (+109/+165)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,435	A→C	6.5%	intergenic (+111/+163)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,442	T→G	5.7%	intergenic (+118/+156)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,443	T→A	5.8%	intergenic (+119/+155)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,444	C→A	5.6%	intergenic (+120/+154)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,451	G→T	5.5%	intergenic (+127/+147)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,453	T→C	5.7%	intergenic (+129/+145)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	780,559	A→C	15.4%	intergenic (‑86/+36)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,561	T→A	13.9%	intergenic (‑88/+34)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,563	G→T	14.3%	intergenic (‑90/+32)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	788,584	C→A	11.9%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,586	A→T	11.4%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,587	A→T	11.4%	intergenic (+34/‑179)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,589	T→G	11.4%	intergenic (+36/‑177)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	790,960	T→A	6.7%	Q46L (CAG→CTG)	PP_0677 ←	lipoprotein
RA	797,512	G→A	17.3%	intergenic (+33/‑44)	PP_0682 → / → PP_0683	inner membrane protein/hypothetical protein
RA	812,051	T→C	9.3%	Q68Q (CAA→CAG)	PP_0698 ←	LysR family transcriptional regulator
RA	812,056	G→A	7.9%	L67L (CTG→TTG)	PP_0698 ←	LysR family transcriptional regulator
RA	813,203	T→G	7.0%	intergenic (+107/+24)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	813,204	T→C	7.0%	intergenic (+108/+23)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	813,205	G→A	6.8%	intergenic (+109/+22)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	813,206	C→A	7.1%	intergenic (+110/+21)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	826,689	C→G	8.2%	intergenic (‑88/‑124)	PP_0710 ← / → ycaC‑I	hypothetical protein/putative hydrolase
RA	838,760	T→A	6.2%	*314L (TAA→TTA)	prs ←	ribose‑phosphate pyrophosphokinase
RA	838,766	A→G	6.7%	F312S (TTC→TCC)	prs ←	ribose‑phosphate pyrophosphokinase
RA	867,998	A→G	5.4%	intergenic (+93/+84)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	867,999	T→C	7.2%	intergenic (+94/+83)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	868,054	G→T	6.7%	intergenic (+149/+28)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	868,055	A→C	6.7%	intergenic (+150/+27)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	877,904	C→T	5.1%	G93D (GGC→GAC)	hprA ←	glycerate dehydrogenase
RA	883,809	T→G	7.1%	intergenic (+44/‑284)	PP_0766 → / → PP_0767	hypothetical protein/LuxR family transcriptional regulator
RA	895,210	G→C	7.5%	intergenic (+47/+17)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,213	G→C	8.5%	intergenic (+50/+14)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,219	G→A	9.9%	intergenic (+56/+8)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,222	G→C	7.8%	intergenic (+59/+5)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	898,152	C→T	9.9%	Y11Y (TAC→TAT)	PP_0781 →	hypothetical protein
RA	898,208	C→A	5.9%	P30Q (CCA→CAA)	PP_0781 →	hypothetical protein
RA	904,536	G→T	6.1%	L264L (CTG→CTT)	PP_0788 →	hypothetical protein
RA	937,766	A→T	10.6%	L2620Q (CTG→CAG)	PP_0806 ←	surface adhesion protein
RA	937,771	A→T	10.2%	A2618A (GCT→GCA)	PP_0806 ←	surface adhesion protein
RA	944,192	C→G	7.7%	S478T (AGC→ACC)	PP_0806 ←	surface adhesion protein
RA	944,212	T→C	8.1%	A471A (GCA→GCG)	PP_0806 ←	surface adhesion protein
RA	944,251	A→T	8.3%	G458G (GGT→GGA)	PP_0806 ←	surface adhesion protein
RA	944,257	G→A	8.3%	V456V (GTC→GTT)	PP_0806 ←	surface adhesion protein
RA	955,079	Δ1 bp	9.8%	intergenic (+30/‑283)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,083	T→A	9.8%	intergenic (+34/‑279)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,085:1	+G	9.8%	intergenic (+36/‑277)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	956,586	G→T	9.6%	intergenic (+16/‑98)	alaC → / → PP_0818	aminotransferase/hypothetical protein
RA	956,587	A→T	9.3%	intergenic (+17/‑97)	alaC → / → PP_0818	aminotransferase/hypothetical protein
RA	956,588	A→C	9.3%	intergenic (+18/‑96)	alaC → / → PP_0818	aminotransferase/hypothetical protein
RA	972,118	T→A	5.4%	L136Q (CTG→CAG)	secD →	protein translocase subunit SecD
RA	972,121	T→A	5.4%	L137Q (CTG→CAG)	secD →	protein translocase subunit SecD
RA	983,584	T→A	9.4%	intergenic (+39/‑50)	iscX → / → ndk	cysteine desulfurase activity regulator/nucleoside diphosphate kinase
RA	983,587	A→T	9.4%	intergenic (+42/‑47)	iscX → / → ndk	cysteine desulfurase activity regulator/nucleoside diphosphate kinase
RA	983,590	T→A	9.4%	intergenic (+45/‑44)	iscX → / → ndk	cysteine desulfurase activity regulator/nucleoside diphosphate kinase
RA	992,866	G→T	9.3%	intergenic (+21/‑131)	der → / → PP_0858	GTPase Der/methionine/glutamine aminotransferase
RA	992,868	A→T	7.4%	intergenic (+23/‑129)	der → / → PP_0858	GTPase Der/methionine/glutamine aminotransferase
RA	992,869	A→T	7.6%	intergenic (+24/‑128)	der → / → PP_0858	GTPase Der/methionine/glutamine aminotransferase
RA	1,001,196	A→T	9.3%	Q57L (CAG→CTG)	PP_0863 →	hypothetical protein
RA	1,001,199	A→T	9.3%	Q58L (CAG→CTG)	PP_0863 →	hypothetical protein
RA	1,004,529	A→T	11.8%	Q184L (CAG→CTG)	PP_0866 →	transmembrane sensor
RA	1,013,231	A→T	10.1%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,237	C→A	7.4%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,238	A→T	7.3%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,244	G→C	7.2%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,245	G→C	7.1%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,251	A→T	7.1%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,252	T→G	8.5%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,258	A→T	12.1%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,024,313	G→C	6.2%	S279R (AGC→AGG)	opdP ←	glycine‑glutamate dipeptide porin
RA	1,026,511	C→G	6.0%	D154H (GAC→CAC)	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,033,602	T→A	7.3%	G73G (GGT→GGA)	PP_0891 →	hypothetical protein
RA	1,033,605	T→A	7.4%	I74I (ATT→ATA)	PP_0891 →	hypothetical protein
RA	1,035,205	G→T	5.2%	V13V (GTG→GTT)	PP_0893 →	ThiJ/PfpI family protein
RA	1,049,187	A→T	6.5%	L139Q (CTG→CAG)	PP_0907 ←	RND transporter membrane fusion protein‑like protein
RA	1,049,192	C→A	6.5%	L137L (CTG→CTT)	PP_0907 ←	RND transporter membrane fusion protein‑like protein
RA	1,070,265	G→C	18.4%	intergenic (+62/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,268	G→C	18.4%	intergenic (+65/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,076,829	T→A	8.6%	L68Q (CTG→CAG)	mreC →	cell shape‑determining protein MreC
RA	1,076,832	T→A	8.7%	L69Q (CTG→CAG)	mreC →	cell shape‑determining protein MreC
RA	1,089,913	C→T	7.7%	Q257* (CAG→TAG)	fumC‑I →	class 2 fumarate hydratase
RA	1,123,943	T→A	8.5%	intergenic (‑138/+83)	PP_mr13 ← / ← gcvT‑I	cspA regulatory region/aminomethyltransferase
RA	1,123,948	T→A	8.5%	intergenic (‑143/+78)	PP_mr13 ← / ← gcvT‑I	cspA regulatory region/aminomethyltransferase
RA	1,130,198	A→T	24.2%	intergenic (‑247/+57)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,145,446	G→A	8.6%	intergenic (‑107/+34)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,447	T→C	8.9%	intergenic (‑108/+33)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,454	A→G	9.5%	intergenic (‑115/+26)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,148,799	G→T	6.7%	T151K (ACG→AAG)	PP_1007 ←	transmembrane sensor
RA	1,148,802	A→C	6.9%	L150R (CTT→CGT)	PP_1007 ←	transmembrane sensor
RA	1,151,964	A→T	7.0%	N228I (AAC→ATC)	edd →	phosphogluconate dehydratase
RA	1,151,972	C→T	6.0%	Q231* (CAG→TAG) ‡	edd →	phosphogluconate dehydratase
RA	1,151,973	A→G	6.1%	Q231R (CAG→CGG) ‡	edd →	phosphogluconate dehydratase
RA	1,151,981	A→T	6.1%	M234L (ATG→TTG)	edd →	phosphogluconate dehydratase
RA	1,196,073	G→C	7.3%	G43A (GGC→GCC)	xcpQ →	type II secretion pathway protein XcpQ
RA	1,198,622	A→G	9.1%	D309G (GAC→GGC) ‡	gspE →	protein secretion protein
RA	1,198,623	C→T	5.5%	D309D (GAC→GAT) ‡	gspE →	protein secretion protein
RA	1,202,860	A→C	6.2%	Q228P (CAG→CCG)	xcpY →	type II secretion pathway protein XcpY
RA	1,202,863	G→T	5.8%	R229L (CGG→CTG)	xcpY →	type II secretion pathway protein XcpY
RA	1,202,873	A→G	5.6%	A232A (GCA→GCG)	xcpY →	type II secretion pathway protein XcpY
RA	1,253,435	G→C	10.7%	intergenic (‑75/+32)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,253,437	A→T	11.0%	intergenic (‑77/+30)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,253,439	G→C	9.9%	intergenic (‑79/+28)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,256,887	A→T	7.2%	noncoding (434/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,888	G→T	8.3%	noncoding (433/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,889	A→C	8.5%	noncoding (432/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,890	A→T	7.0%	noncoding (431/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,268,573	T→C	6.3%	N289D (AAC→GAC)	PP_1109 ←	GntR family transcriptional regulator
RA	1,273,328	G→T	5.2%	intergenic (+113/+55)	PP_1113 → / ← PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
RA	1,273,329	C→T	5.3%	intergenic (+114/+54)	PP_1113 → / ← PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
RA	1,275,090	G→C	6.9%	intergenic (‑281/+31)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,275,093	G→C	7.9%	intergenic (‑284/+28)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,289,852	Δ1 bp	8.5%	coding (1119/2349 nt)	PP_1126 →	hydrolase
RA	1,289,857	A→T	8.6%	N375I (AAT→ATT)	PP_1126 →	hydrolase
RA	1,289,861:1	+A	8.9%	coding (1128/2349 nt)	PP_1126 →	hydrolase
RA	1,307,446	C→G	11.6%	G60R (GGC→CGC)	livK ←	branched‑chain amino acids ABC transporter substrate‑binding protein
RA	1,307,447	C→G	11.9%	A59A (GCG→GCC)	livK ←	branched‑chain amino acids ABC transporter substrate‑binding protein
RA	1,307,455	T→G	10.4%	N57H (AAC→CAC)	livK ←	branched‑chain amino acids ABC transporter substrate‑binding protein
RA	1,311,745	T→C	6.7%	intergenic (‑207/+71)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,311,748	G→A	6.5%	intergenic (‑210/+68)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,320,275	A→G	6.5%	L821P (CTC→CCC)	PP_1154 ←	sensory box protein
RA	1,327,127	C→T	59.9%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,330,494	T→C	9.2%	intergenic (+19/‑288)	PP_5SE → / → PP_1157	5S ribosomal RNA/acetolactate synthase
RA	1,344,106	G→T	10.9%	P13T (CCT→ACT)	PP_1168 ←	TRAP dicarboxylate transporter subunit DctQ
RA	1,344,113	G→C	10.5%	A10A (GCC→GCG) ‡	PP_1168 ←	TRAP dicarboxylate transporter subunit DctQ
RA	1,344,114	G→C	10.3%	A10G (GCC→GGC) ‡	PP_1168 ←	TRAP dicarboxylate transporter subunit DctQ
RA	1,344,121	A→C	9.4%	C8G (TGC→GGC)	PP_1168 ←	TRAP dicarboxylate transporter subunit DctQ
RA	1,355,475	Δ1 bp	8.7%	intergenic (‑93/‑1)	nrdA ← / → PP_1180	ribonucleoside‑diphosphate reductase subunit alpha/hypothetical protein
RA	1,355,480:1	+T	8.6%	coding (5/264 nt)	PP_1180 →	hypothetical protein
RA	1,366,352	G→A	6.2%	G118G (GGC→GGT)	PP_1191 ←	S4 domain‑containing protein
RA	1,376,327	A→T	13.9%	intergenic (+30/+19)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,328	G→C	12.5%	intergenic (+31/+18)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,329	A→T	12.7%	intergenic (+32/+17)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,391,996	C→T	9.4%	intergenic (+21/‑94)	aspS → / → PP_1214	aspartate‑‑tRNA ligase/transcriptional regulator
RA	1,391,997	A→G	9.4%	intergenic (+22/‑93)	aspS → / → PP_1214	aspartate‑‑tRNA ligase/transcriptional regulator
RA	1,400,878	C→A	5.5%	intergenic (+35/‑134)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,400,880	A→T	5.3%	intergenic (+37/‑132)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,400,882	T→G	5.2%	intergenic (+39/‑130)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,403,596	G→A	24.9%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,403,597	T→C	25.8%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,409,134	T→G	6.2%	intergenic (+72/‑203)	PP_1230 → / → nadA	hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit
RA	1,416,940	A→C	10.2%	H61P (CAC→CCC)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,942	G→A	9.4%	V62M (GTG→ATG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,947	T→C	9.5%	H63H (CAT→CAC)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,949	G→T	9.9%	G64V (GGG→GTG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,417,334	Δ1 bp	10.0%	coding (576/759 nt)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,417,338:1	+A	10.2%	coding (580/759 nt)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,425,657	T→C	6.0%	intergenic (+52/‑453)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,425,662	C→T	5.5%	intergenic (+57/‑448)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,425,663	A→G	5.5%	intergenic (+58/‑447)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,425,668	G→A	5.2%	intergenic (+63/‑442)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,433,391	G→T	6.3%	R334R (CGG→AGG)	PP_1255 ←	cis‑4‑hydroxy‑D‑proline oxidase
RA	1,443,137	G→A	6.8%	intergenic (‑68/+108)	ghrB ← / ← PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
RA	1,443,140	G→C	6.8%	intergenic (‑71/+105)	ghrB ← / ← PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
RA	1,443,142	G→C	6.7%	intergenic (‑73/+103)	ghrB ← / ← PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
RA	1,443,147	G→C	6.7%	intergenic (‑78/+98)	ghrB ← / ← PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
RA	1,443,148	T→C	7.0%	intergenic (‑79/+97)	ghrB ← / ← PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
RA	1,443,149	G→C	6.8%	intergenic (‑80/+96)	ghrB ← / ← PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
RA	1,443,152	T→C	10.0%	intergenic (‑83/+93)	ghrB ← / ← PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
RA	1,444,472	T→A	6.2%	I30N (ATT→AAT)	PP_1263 →	fusaric acid resistance protein
RA	1,458,124	T→G	8.5%	intergenic (+17/+23)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,126	A→T	8.6%	intergenic (+19/+21)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,128	C→A	8.6%	intergenic (+21/+19)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,463,031	A→T	10.8%	intergenic (‑100/+42)	algI ← / ← algL	alginate O‑acetylase AlgI/alginate lyase
RA	1,463,032	A→T	9.4%	intergenic (‑101/+41)	algI ← / ← algL	alginate O‑acetylase AlgI/alginate lyase
RA	1,464,203	G→A	7.9%	T474T (ACC→ACT) ‡	algX ←	alginate biosynthesis protein AlgX
RA	1,464,205	T→A	8.0%	T474S (ACC→TCC) ‡	algX ←	alginate biosynthesis protein AlgX
RA	1,464,207	T→C	7.2%	Q473R (CAG→CGG)	algX ←	alginate biosynthesis protein AlgX
RA	1,481,522	T→C	10.1%	S75G (AGC→GGC)	rhlB ←	ATP‑dependent RNA helicase RhlB
RA	1,481,523	G→A	10.1%	A74A (GCC→GCT)	rhlB ←	ATP‑dependent RNA helicase RhlB
RA	1,487,103	C→T	6.4%	intergenic (+112/+18)	yhdZ → / ← degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
RA	1,506,932	A→G	11.3%	intergenic (+44/‑73)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,936	G→A	11.9%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,939	T→C	9.1%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,943	C→T	9.1%	intergenic (+55/‑62)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,511,522	G→A	8.5%	pseudogene (87/1851 nt)	PP_1325 ←	putative lipoprotein
RA	1,511,862	G→A	6.8%	G26D (GGC→GAC)	rsmI →	16S rRNA 2'‑O‑ribose C1402 methyltransferase
RA	1,521,026	C→G	6.5%	L81V (CTG→GTG)	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,521,032	T→A	6.5%	L83M (TTG→ATG) ‡	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,521,033	T→A	5.3%	L83* (TTG→TAG) ‡	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,521,039	C→G	5.3%	T85R (ACG→AGG)	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,526,613	G→T	6.2%	C253F (TGC→TTC)	ddlB →	D‑alanine‑‑D‑alanine ligase B
RA	1,526,622	T→A	5.1%	I256N (ATT→AAT)	ddlB →	D‑alanine‑‑D‑alanine ligase B
RA	1,533,762	C→G	5.9%	I577M (ATC→ATG)	secA →	protein translocase subunit SecA
RA	1,534,923	T→G	8.3%	intergenic (+72/‑111)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,925	C→T	8.0%	intergenic (+74/‑109)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,931	T→C	9.4%	intergenic (+80/‑103)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,935	C→T	8.8%	intergenic (+84/‑99)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,940	A→G	9.4%	intergenic (+89/‑94)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,944	G→A	9.2%	intergenic (+93/‑90)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,950	A→G	9.1%	intergenic (+99/‑84)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,952	C→A	7.7%	intergenic (+101/‑82)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,954	T→C	7.9%	intergenic (+103/‑80)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,544,531	C→A	22.5%	intergenic (+48/+66)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,534	G→C	21.9%	intergenic (+51/+63)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,536	C→G	21.9%	intergenic (+53/+61)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,541	C→G	21.9%	intergenic (+58/+56)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,543	G→C	21.8%	intergenic (+60/+54)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,546	T→G	22.2%	intergenic (+63/+51)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,937	A→T	6.5%	I99F (ATC→TTC)	groL →	chaperonin GroEL
RA	1,549,942	C→T	7.5%	V100V (GTC→GTT)	groL →	chaperonin GroEL
RA	1,549,943	A→G	6.4%	N101D (AAC→GAC)	groL →	chaperonin GroEL
RA	1,549,948	A→T	5.4%	E102D (GAA→GAT)	groL →	chaperonin GroEL
RA	1,551,324	G→T	11.2%	intergenic (+41/+85)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,551,327	A→C	11.3%	intergenic (+44/+82)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,554,190	T→A	5.6%	C74S (TGC→AGC)	sbcB →	exodeoxyribonuclease I
RA	1,563,869	G→T	8.7%	intergenic (+93/+29)	PP_1372 → / ← pitB	hypothetical protein/phosphate transporter
RA	1,563,870	A→C	8.6%	intergenic (+94/+28)	PP_1372 → / ← pitB	hypothetical protein/phosphate transporter
RA	1,580,646	C→T	8.3%	V265I (GTC→ATC)	ttgB ←	efflux pump membrane protein TtgB
RA	1,580,647	A→G	8.5%	D264D (GAT→GAC)	ttgB ←	efflux pump membrane protein TtgB
RA	1,592,024	C→A	24.4%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,592,029	T→G	23.6%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,592,046	G→C	8.5%	intergenic (‑111/‑92)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,594,291	T→C	7.6%	T392A (ACC→GCC)	kgtP ←	alpha‑ketoglutarate permease
RA	1,594,292	G→A	8.7%	G391G (GGC→GGT)	kgtP ←	alpha‑ketoglutarate permease
RA	1,598,894	T→G	6.8%	intergenic (‑91/+40)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,608,967	A→T	5.6%	L447Q (CTG→CAG)	PP_1411 ←	GGDEF domain‑containing protein
RA	1,629,495	G→T	9.1%	Q321H (CAG→CAT)	mucB →	sigma factor AlgU regulator MucB
RA	1,629,498	A→C	9.1%	*322Y (TAA→TAC)	mucB →	sigma factor AlgU regulator MucB
RA	1,629,507	T→C	6.2%	intergenic (+9/‑123)	mucB → / → PP_1430	sigma factor AlgU regulator MucB/DegP‑like serine endoprotease
RA	1,637,341	T→C	6.0%	intergenic (+8/+58)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,349	A→G	8.5%	intergenic (+16/+50)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,351	C→T	8.4%	intergenic (+18/+48)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,357	T→C	17.8%	intergenic (+24/+42)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,367	A→T	20.6%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,368	A→T	21.1%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,378	G→A	18.9%	intergenic (+45/+21)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,384	A→G	10.2%	intergenic (+51/+15)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,386	C→T	8.0%	intergenic (+53/+13)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,306	G→A	7.0%	intergenic (‑92/+60)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,313	G→C	7.7%	intergenic (‑99/+53)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,319	Δ1 bp	7.2%	intergenic (‑105/+47)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,321:1	+C	7.1%	intergenic (‑107/+45)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,327	G→C	6.7%	intergenic (‑113/+39)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,334	T→C	6.9%	intergenic (‑120/+32)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,969	G→A	74.5%	Y265Y (TAC→TAT)	oprB‑II ←	carbohydrate‑selective porin
RA	1,663,117	A→T	9.7%	intergenic (+21/+17)	purT → / ← yhjE	phosphoribosylglycinamide formyltransferase/metabolite transport protein YhjE
RA	1,663,118	A→T	9.8%	intergenic (+22/+16)	purT → / ← yhjE	phosphoribosylglycinamide formyltransferase/metabolite transport protein YhjE
RA	1,663,119	A→T	9.6%	intergenic (+23/+15)	purT → / ← yhjE	phosphoribosylglycinamide formyltransferase/metabolite transport protein YhjE
RA	1,684,314	T→C	8.0%	F284S (TTT→TCT)	PP_1478 →	xenobiotic reductase
RA	1,684,319	G→A	8.5%	E286K (GAG→AAG)	PP_1478 →	xenobiotic reductase
RA	1,691,814	T→C	18.3%	intergenic (+39/‑132)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,815	C→G	18.3%	intergenic (+40/‑131)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,825	C→A	26.9%	intergenic (+50/‑121)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,828	T→G	24.3%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,838	C→G	15.2%	intergenic (+63/‑108)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,839	G→A	15.0%	intergenic (+64/‑107)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,693,834	C→G	6.3%	R87R (CGC→CGG)	PP_1489 →	CheW domain‑containing protein
RA	1,695,062	C→G	5.7%	A329G (GCC→GGC)	wspC →	biofilm formation methyltransferase WspC
RA	1,695,065	G→A	5.6%	R330Q (CGG→CAG)	wspC →	biofilm formation methyltransferase WspC
RA	1,695,071	C→G	5.8%	A332G (GCC→GGC)	wspC →	biofilm formation methyltransferase WspC
RA	1,695,549	G→C	8.6%	A62P (GCG→CCG)	PP_1491 →	CheW domain‑containing protein
RA	1,695,552	G→C	8.8%	V63L (GTG→CTG)	PP_1491 →	CheW domain‑containing protein
RA	1,703,263	T→C	12.6%	intergenic (+70/‑97)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,294:1	+T	21.5%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,704,678	T→A	15.9%	M1M (TTG→ATG) †‡	PP_1499 →	hypothetical protein
RA	1,704,679	T→A	15.9%	M1* (TTG→TAG) †‡	PP_1499 →	hypothetical protein
RA	1,704,691	G→C	5.7%	R5T (AGG→ACG)	PP_1499 →	hypothetical protein
RA	1,707,269	G→C	6.9%	intergenic (+45/+97)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,707,272	G→C	6.7%	intergenic (+48/+94)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,122	A→T	9.4%	intergenic (+71/‑187)	ppc → / → adk	phosphoenolpyruvate carboxylase/adenylate kinase
RA	1,712,993	T→A	12.3%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,712,994	T→A	12.3%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,720,469	G→A	5.3%	R56H (CGC→CAC)	PP_1516 →	RND membrane fusion protein
RA	1,726,527	A→T	5.6%	L560Q (CTG→CAG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,726,530	A→T	5.6%	L559Q (CTG→CAG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,728,698	A→G	6.5%	intergenic (+50/+73)	cspA‑I → / ← PP_1523	major cold shock protein/hypothetical protein
RA	1,728,699	C→T	7.1%	intergenic (+51/+72)	cspA‑I → / ← PP_1523	major cold shock protein/hypothetical protein
RA	1,755,417	T→C	5.7%	intergenic (+90/‑110)	PP_1558 → / → PP_1559	hypothetical protein/holin
RA	1,755,423	T→A	5.6%	intergenic (+96/‑104)	PP_1558 → / → PP_1559	hypothetical protein/holin
RA	1,755,430	G→A	5.6%	intergenic (+103/‑97)	PP_1558 → / → PP_1559	hypothetical protein/holin
RA	1,777,566	C→G	7.9%	intergenic (+258/+34)	PP_5476 → / ← PP_1585	hypothetical protein/antidote protein
RA	1,777,567	C→G	7.0%	intergenic (+259/+33)	PP_5476 → / ← PP_1585	hypothetical protein/antidote protein
RA	1,777,577	C→G	5.3%	intergenic (+269/+23)	PP_5476 → / ← PP_1585	hypothetical protein/antidote protein
RA	1,780,171	T→C	8.0%	intergenic (+88/+18)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,808,122	T→A	6.5%	V44D (GTT→GAT)	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,810,377	T→G	7.6%	intergenic (+96/‑73)	eno → / → ftsB	enolase/cell division protein
RA	1,822,231	A→T	10.4%	intergenic (+31/+27)	PP_mr22 → / ← fdxA	PrrB_RsmZ ncRNA/ferredoxin 1
RA	1,831,819	G→A	6.7%	R219Q (CGG→CAG)	yfiP →	hypothetical protein
RA	1,831,822	T→C	6.3%	L220P (CTG→CCG)	yfiP →	hypothetical protein
RA	1,842,594	C→T	5.9%	V748I (GTC→ATC)	gacS ←	sensor protein GacS
RA	1,851,994	G→T	100%	E346D (GAG→GAT)	relA →	ATP:GTP 3'‑pyrophosphotransferase
RA	1,859,569	A→C	6.7%	intergenic (‑119/+37)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,859,571	T→A	6.3%	intergenic (‑121/+35)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,863,398	Δ1 bp	5.6%	coding (1042/1068 nt)	PP_1666 →	hypothetical protein
RA	1,863,401:1	+A	5.8%	coding (1045/1068 nt)	PP_1666 →	hypothetical protein
RA	1,872,674	T→C	9.8%	L306P (CTG→CCG)	cobQ →	adenosyl‑cobyric acid synthase
RA	1,872,679	G→T	10.0%	E308* (GAG→TAG)	cobQ →	adenosyl‑cobyric acid synthase
RA	1,872,685	G→A	9.9%	G310S (GGT→AGT)	cobQ →	adenosyl‑cobyric acid synthase
RA	1,889,221	A→G	9.5%	L365P (CTG→CCG)	PP_1695 ←	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
RA	1,899,320	A→G	5.5%	intergenic (+348/‑172)	PP_t18 → / → PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
RA	1,905,511	G→A	7.5%	R575H (CGC→CAC)	nirB →	nitrite reductase large subunit
RA	1,910,832	G→A	5.5%	R8C (CGC→TGC)	PP_1710 ←	phthalate permease family MFS transporter
RA	1,915,640:1	+A	11.8%	intergenic (+26/‑263)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,644	T→A	10.9%	intergenic (+30/‑259)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,647	Δ1 bp	10.9%	intergenic (+33/‑256)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,921,575	T→C	6.1%	intergenic (+8/+53)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,921,591	T→A	19.5%	intergenic (+24/+37)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,921,592	T→A	19.5%	intergenic (+25/+36)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,933,717	A→C	5.8%	L27R (CTC→CGC)	minD ←	MinC‑MinD‑MinE system ATPase
RA	1,939,163	A→C	5.9%	intergenic (‑65/‑114)	PP_1738 ← / → PP_1739	hypothetical protein/membrane protein
RA	1,939,164	G→T	8.5%	intergenic (‑66/‑113)	PP_1738 ← / → PP_1739	hypothetical protein/membrane protein
RA	1,948,216	C→G	7.2%	R494R (CGG→CGC)	PP_1749 ←	acetyltransferase
RA	1,953,380	G→A	6.8%	G68G (GGC→GGT)	mnmC ←	methyltransferase/FAD‑dependent oxidoreductase
RA	1,955,252	T→A	7.7%	intergenic (+39/‑154)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,253	T→A	7.7%	intergenic (+40/‑153)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,981,135	T→G	11.5%	intergenic (+31/‑269)	rpsA → / → ihfB	30S ribosomal protein S1/integration host factor subunit beta
RA	1,981,136	C→A	10.5%	intergenic (+32/‑268)	rpsA → / → ihfB	30S ribosomal protein S1/integration host factor subunit beta
RA	1,993,644:1	+T	8.1%	intergenic (+39/+59)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,647	Δ1 bp	7.6%	intergenic (+42/+56)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	2,004,613	G→A	13.6%	intergenic (+60/+90)	PP_1787 → / ← PP_1788	hypothetical protein/hypothetical protein
RA	2,004,616	T→C	13.8%	intergenic (+63/+87)	PP_1787 → / ← PP_1788	hypothetical protein/hypothetical protein
RA	2,033,417	C→G	5.2%	I285M (ATC→ATG)	pgi‑I →	glucose 6‑phosphate isomerase
RA	2,035,754	C→T	10.4%	A102T (GCC→ACC)	PP_5477 ←	hypothetical protein
RA	2,035,756	T→C	10.2%	D101G (GAT→GGT)	PP_5477 ←	hypothetical protein
RA	2,062,783	T→A	5.9%	I552N (ATT→AAT)	PP_1838 →	membrane protein
RA	2,062,789	C→G	5.7%	P554R (CCG→CGG)	PP_1838 →	membrane protein
RA	2,062,795	T→A	5.1%	I556N (ATT→AAT)	PP_1838 →	membrane protein
RA	2,063,228	C→G	6.3%	intergenic (+42/‑165)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,235	C→A	5.8%	intergenic (+49/‑158)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,236	A→C	7.1%	intergenic (+50/‑157)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,237	T→C	6.7%	intergenic (+51/‑156)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,248	T→C	6.9%	intergenic (+62/‑145)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,251	G→A	8.0%	intergenic (+65/‑142)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,087,404	C→G	9.4%	intergenic (+174/+744)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,087,405	C→G	9.4%	intergenic (+175/+743)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,092,425	T→C	11.3%	intergenic (+28/+63)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,469	T→A	10.1%	intergenic (+72/+19)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,470	T→A	11.7%	intergenic (+73/+18)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,095,232	G→C	9.8%	intergenic (‑240/+77)	htpX ← / ← alaA	protease HtpX/glutamate‑pyruvate aminotransferase
RA	2,095,235	G→C	10.8%	intergenic (‑243/+74)	htpX ← / ← alaA	protease HtpX/glutamate‑pyruvate aminotransferase
RA	2,100,026	T→C	7.6%	intergenic (‑94/‑111)	PP_1875 ← / → PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
RA	2,134,314	A→C	11.2%	intergenic (‑37/+32)	PP_1892 ← / ← fadE	hypothetical protein/medium‑long chain acyl‑CoA dehydrogenase
RA	2,134,321	G→T	13.5%	intergenic (‑44/+25)	PP_1892 ← / ← fadE	hypothetical protein/medium‑long chain acyl‑CoA dehydrogenase
RA	2,139,665	T→G	7.4%	Q167H (CAA→CAC)	PP_5481 ←	hypothetical protein
RA	2,139,671	A→T	9.1%	R165R (CGT→CGA)	PP_5481 ←	hypothetical protein
RA	2,139,674	A→T	9.1%	R164R (CGT→CGA)	PP_5481 ←	hypothetical protein
RA	2,139,680	C→A	8.5%	Q162H (CAG→CAT)	PP_5481 ←	hypothetical protein
RA	2,142,379	A→G	5.3%	Q691R (CAG→CGG)	PP_1897 →	DNA internalization‑related competence protein ComEC/Rec2
RA	2,152,110	A→G	5.2%	T251A (ACC→GCC)	rluC →	ribosomal large subunit pseudouridine synthase C
RA	2,157,429	G→A	6.3%	V230V (GTG→GTA)	fabD →	malonyl‑CoA‑ACP transacylase
RA	2,242,141	G→C	7.9%	noncoding (35/76 nt)	PP_t29 →	tRNA‑Ala
RA	2,246,284	C→T	7.2%	intergenic (+30/+61)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,246,285	A→G	9.5%	intergenic (+31/+60)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,259,987	A→G	5.4%	T178A (ACC→GCC)	fimV →	motility protein FimV
RA	2,271,709	C→T	8.1%	intergenic (+50/‑50)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,271,710	A→G	8.1%	intergenic (+51/‑49)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,273,105	C→G	9.6%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,109	A→T	9.5%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,113	C→G	9.3%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,123	C→T	8.3%	intergenic (+45/+246)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,282,780	T→G	10.3%	intergenic (‑129/+100)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,813	T→G	32.9%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,817	G→C	32.8%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,818	G→C	32.9%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,822	C→A	35.6%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,855	C→A	5.6%	intergenic (‑204/+25)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,311,091	G→A	5.1%	V267I (GTA→ATA)	PP_2033 →	hypothetical protein
RA	2,316,298:1	+C	5.9%	coding (59/1548 nt)	PP_2038 →	long‑chain‑fatty‑acid‑‑CoA ligase
RA	2,316,303	Δ1 bp	5.8%	coding (64/1548 nt)	PP_2038 →	long‑chain‑fatty‑acid‑‑CoA ligase
RA	2,318,096	C→A	8.0%	P99T (CCG→ACG)	PP_2039 →	acyl‑CoA dehydrogenase
RA	2,320,842	T→G	7.0%	N148H (AAC→CAC)	PP_2041 ←	LysR family transcriptional regulator
RA	2,320,847	A→C	7.2%	V146G (GTG→GGG)	PP_2041 ←	LysR family transcriptional regulator
RA	2,341,621	G→T	6.5%	L266L (CTG→CTT)	yraO →	transporter YraO
RA	2,351,632	A→C	11.2%	L36R (CTG→CGG) ‡	PP_2066 ←	GntR family transcriptional regulator
RA	2,351,633	G→T	9.3%	L36M (CTG→ATG) ‡	PP_2066 ←	GntR family transcriptional regulator
RA	2,351,640	C→G	9.1%	V33V (GTG→GTC)	PP_2066 ←	GntR family transcriptional regulator
RA	2,353,802	T→C	6.2%	Q258R (CAG→CGG)	PP_2068 ←	multidrug MFS transporter membrane fusion protein
RA	2,353,807	T→A	6.3%	A256A (GCA→GCT)	PP_2068 ←	multidrug MFS transporter membrane fusion protein
RA	2,353,812	G→A	6.1%	R255W (CGG→TGG)	PP_2068 ←	multidrug MFS transporter membrane fusion protein
RA	2,367,453	A→C	9.9%	Q76H (CAA→CAC)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,367,454	G→T	9.4%	V77L (GTG→TTG)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,376,742	G→C	6.6%	intergenic (+60/‑145)	PP_2083 → / → PP_2084	lipase/ribonuclease activity regulator
RA	2,376,751	T→C	9.8%	intergenic (+69/‑136)	PP_2083 → / → PP_2084	lipase/ribonuclease activity regulator
RA	2,376,752	G→A	8.6%	intergenic (+70/‑135)	PP_2083 → / → PP_2084	lipase/ribonuclease activity regulator
RA	2,383,801	T→C	10.3%	S47G (AGC→GGC)	PP_2091 ←	serine/threonine‑protein kinase
RA	2,383,806	C→G	11.1%	G45A (GGC→GCC)	PP_2091 ←	serine/threonine‑protein kinase
RA	2,383,811	G→A	11.6%	A43A (GCC→GCT)	PP_2091 ←	serine/threonine‑protein kinase
RA	2,404,130	G→C	7.4%	A238A (GCG→GCC)	PP_2106 →	ammonium transporter
RA	2,408,414	A→C	6.2%	V65G (GTG→GGG)	PP_2111 ←	aerotaxis receptor
RA	2,412,919	G→C	5.4%	intergenic (+140/‑281)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,412,920	G→C	5.4%	intergenic (+141/‑280)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,416,597	A→T	7.6%	intergenic (+87/+28)	pdxB → / ← PP_2118	erythronate‑4‑phosphate dehydrogenase/hypothetical protein
RA	2,416,598	A→T	7.6%	intergenic (+88/+27)	pdxB → / ← PP_2118	erythronate‑4‑phosphate dehydrogenase/hypothetical protein
RA	2,454,275	T→C	7.1%	N296S (AAC→AGC)	mfd ←	transcription‑repair coupling factor
RA	2,475,749	G→T	7.1%	I221I (ATC→ATA)	dusA ←	tRNA dihydrouridine synthase DusA
RA	2,483,440	G→A	6.0%	R88H (CGC→CAC)	puuA‑I →	glutamate‑putrescine ligase
RA	2,483,443	T→A	5.5%	L89Q (CTG→CAG)	puuA‑I →	glutamate‑putrescine ligase
RA	2,483,446	T→C	5.6%	V90A (GTG→GCG)	puuA‑I →	glutamate‑putrescine ligase
RA	2,501,098	C→T	6.6%	P138P (CCG→CCA)	PP_2194 ←	LysR family transcriptional regulator
RA	2,521,645	A→G	8.6%	R951R (CGA→CGG)	PP_2212 →	leucine‑rich repeat‑containing protein
RA	2,521,650	C→T	7.5%	A953V (GCC→GTC)	PP_2212 →	leucine‑rich repeat‑containing protein
RA	2,529,061:1	+C	5.1%	intergenic (+145/‑262)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,540,852	T→A	14.7%	intergenic (+22/+27)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,540,853	G→C	14.5%	intergenic (+23/+26)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,540,854	T→A	13.9%	intergenic (+24/+25)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,560,141	C→G	7.0%	C20W (TGC→TGG)	PP_2243 →	hypothetical protein
RA	2,560,505	T→A	5.8%	W142R (TGG→AGG) ‡	PP_2243 →	hypothetical protein
RA	2,560,507	G→C	6.3%	W142C (TGG→TGC) ‡	PP_2243 →	hypothetical protein
RA	2,560,509	T→A	6.2%	L143Q (CTG→CAG)	PP_2243 →	hypothetical protein
RA	2,568,736	T→A	5.3%	Q285H (CAA→CAT)	PP_2252 ←	hypothetical protein
RA	2,568,739	T→G	5.3%	E284D (GAA→GAC)	PP_2252 ←	hypothetical protein
RA	2,579,691	T→C	6.6%	V353A (GTG→GCG)	PP_2260 →	glycerol‑phosphate ABC transporter ATP‑binding protein
RA	2,579,696	Δ1 bp	7.0%	coding (1063/1095 nt)	PP_2260 →	glycerol‑phosphate ABC transporter ATP‑binding protein
RA	2,579,705:1	+C	7.1%	coding (1072/1095 nt)	PP_2260 →	glycerol‑phosphate ABC transporter ATP‑binding protein
RA	2,579,709	G→A	7.1%	R359H (CGC→CAC)	PP_2260 →	glycerol‑phosphate ABC transporter ATP‑binding protein
RA	2,633,500	T→G	7.8%	intergenic (+100/‑82)	hupB → / → PP_2304	DNA binding regulator subunit beta B/peptidyl‑prolyl cis‑trans isomerase D
RA	2,634,559:1	+C	6.1%	coding (978/1872 nt)	PP_2304 →	peptidyl‑prolyl cis‑trans isomerase D
RA	2,634,566	Δ1 bp	6.2%	coding (985/1872 nt)	PP_2304 →	peptidyl‑prolyl cis‑trans isomerase D
RA	2,651,319	G→C	7.2%	intergenic (+41/+29)	PP_2323 → / ← aroF‑I	hypothetical protein/tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
RA	2,669,714	T→G	13.6%	intergenic (+38/+37)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,669,717	C→A	11.8%	intergenic (+41/+34)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,710,081	A→G	5.4%	Q206R (CAG→CGG)	PP_2372 →	sugar‑binding protein
RA	2,730,927	T→C	7.5%	F74S (TTC→TCC)	polB →	DNA polymerase II
RA	2,730,937	C→G	10.9%	R77R (CGC→CGG)	polB →	DNA polymerase II
RA	2,730,938	C→G	10.9%	P78A (CCG→GCG)	polB →	DNA polymerase II
RA	2,749,655	G→A	7.1%	intergenic (+85/+29)	PP_2405 → / ← PP_2406	hypothetical protein/quinate/shikimate dehydrogenase
RA	2,764,407	G→A	5.9%	A213V (GCC→GTC)	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,764,415	T→G	6.8%	A210A (GCA→GCC) ‡	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,764,416	G→A	6.8%	A210V (GCA→GTA) ‡	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,764,422	C→G	7.2%	G208A (GGC→GCC)	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,764,428	T→C	7.2%	D206G (GAC→GGC) ‡	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,764,429	C→A	7.3%	D206Y (GAC→TAC) ‡	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,771,201	G→C	5.3%	intergenic (‑16/‑143)	lpxOA ← / → PP_2424	Fe(2+)/alpha‑ketoglutarate‑dependent dioxygenase/2'‑5' RNA ligase
RA	2,799,214	A→G	10.1%	intergenic (‑185/+31)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,220	C→T	12.2%	intergenic (‑191/+25)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,223	A→G	12.0%	intergenic (‑194/+22)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,229	C→T	10.9%	intergenic (‑200/+16)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,839,653	G→T	6.3%	T95T (ACC→ACA)	PP_5529 ←	epimerase
RA	2,845,973	C→A	6.1%	S62S (TCG→TCT)	PP_2497 ←	hypothetical protein
RA	2,868,919	G→C	6.4%	intergenic (+415/‑516)	PP_2520 → / → PP_2522	hypothetical protein/transposase
RA	2,868,920	G→C	6.1%	intergenic (+416/‑515)	PP_2520 → / → PP_2522	hypothetical protein/transposase
RA	2,882,554	A→G	5.7%	*103W (TAG→TGG)	PP_2537 →	hypothetical protein
RA	2,882,557	C→T	5.8%	intergenic (+2/‑78)	PP_2537 → / → PP_2538	hypothetical protein/hypothetical protein
RA	2,915,314	G→T	6.1%	A1431S (GCT→TCT)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,925,446	A→T	5.6%	intergenic (‑151/+414)	PP_2563 ← / ← PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
RA	2,949,839	A→T	6.1%	intergenic (+61/+52)	PP_2583 → / ← oguA	acetyltransferase/8‑oxoguanine deaminase
RA	2,951,377	G→C	17.5%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,384	A→C	17.2%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,385	G→T	17.2%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,392	G→C	13.7%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,958,842	G→C	7.7%	intergenic (+65/+77)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,843	T→C	7.2%	intergenic (+66/+76)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,846	G→C	7.8%	intergenic (+69/+73)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,849	G→A	7.9%	intergenic (+72/+70)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,850	G→C	7.9%	intergenic (+73/+69)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,859	G→A	7.5%	intergenic (+82/+60)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	3,001,858	C→G	7.9%	A180G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,001,864	G→A	8.4%	R182Q (CGG→CAG)	PP_2625 →	hypothetical protein
RA	3,001,867	G→C	11.3%	G183A (GGC→GCC)	PP_2625 →	hypothetical protein
RA	3,001,870	T→C	11.0%	L184P (CTG→CCG)	PP_2625 →	hypothetical protein
RA	3,001,876	C→G	8.6%	A186G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,024,250	G→C	6.9%	intergenic (+22/+132)	dapA‑II → / ← PP_2640	4‑hydroxy‑tetrahydrodipicolinate synthase/GNAT family acetyltransferase
RA	3,024,254	A→T	6.6%	intergenic (+26/+128)	dapA‑II → / ← PP_2640	4‑hydroxy‑tetrahydrodipicolinate synthase/GNAT family acetyltransferase
RA	3,024,749	G→C	7.6%	S31W (TCG→TGG)	PP_2640 ←	GNAT family acetyltransferase
RA	3,024,753	G→C	7.3%	L30V (CTG→GTG)	PP_2640 ←	GNAT family acetyltransferase
RA	3,024,757	G→C	7.8%	P28P (CCC→CCG)	PP_2640 ←	GNAT family acetyltransferase
RA	3,030,445	A→G	11.1%	intergenic (+402/‑292)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,456	C→G	10.2%	intergenic (+413/‑281)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,460	G→C	10.2%	intergenic (+417/‑277)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,463	G→C	10.2%	intergenic (+420/‑274)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,031,138	C→G	7.1%	I134M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,048,648	A→C	6.7%	intergenic (+60/‑236)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,053,263	T→C	6.8%	intergenic (+21/+25)	PP_2664 → / ← agmR	two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator
RA	3,061,720	T→C	5.6%	A595A (GCA→GCG)	qedH‑I ←	quinoprotein ethanol dehydrogenase
RA	3,064,165	A→C	5.9%	Q136P (CAG→CCG)	PP_2675 →	cytochrome c‑type protein
RA	3,064,679	T→A	7.3%	S169T (TCG→ACG) ‡	PP_2676 →	substrate‑binding protein
RA	3,064,681	G→C	7.3%	S169S (TCG→TCC) ‡	PP_2676 →	substrate‑binding protein
RA	3,064,683	T→A	7.0%	V170E (GTG→GAG)	PP_2676 →	substrate‑binding protein
RA	3,068,584:1	+C	6.2%	coding (1580/1788 nt)	qedH‑II →	quinoprotein ethanol dehydrogenase
RA	3,146,621	G→C	11.6%	intergenic (+14/+52)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,146,622	G→C	11.8%	intergenic (+15/+51)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,146,654	T→C	6.0%	intergenic (+47/+19)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,146,657	G→A	6.1%	intergenic (+50/+16)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,166,099	G→C	10.0%	G163A (GGC→GCC)	PP_2780 →	3‑oxoacyl‑ACP synthase
RA	3,187,643	C→A	7.7%	R406R (CGG→AGG)	actP‑II →	acetate permease
RA	3,198,945	A→T	7.0%	intergenic (‑246/+31)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,198,949	A→T	6.8%	intergenic (‑250/+27)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,198,953	A→T	7.0%	intergenic (‑254/+23)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,213,020	T→A	6.5%	M15K (ATG→AAG)	mexC →	multidrug RND transporter membrane fusion protein MexC
RA	3,213,031	T→A	7.3%	L19M (TTG→ATG)	mexC →	multidrug RND transporter membrane fusion protein MexC
RA	3,241,021	G→T	5.6%	G225V (GGC→GTC)	PP_2838 →	hypothetical protein
RA	3,241,024	A→C	6.0%	D226A (GAC→GCC)	PP_2838 →	hypothetical protein
RA	3,241,026	C→G	5.5%	P227A (CCC→GCC)	PP_2838 →	hypothetical protein
RA	3,247,894	T→C	8.8%	V36A (GTG→GCG)	ureA →	urease subunit gamma
RA	3,247,898	G→A	8.0%	A37A (GCG→GCA)	ureA →	urease subunit gamma
RA	3,247,907	T→C	8.2%	S40S (AGT→AGC)	ureA →	urease subunit gamma
RA	3,300,198:1	+C	6.3%	intergenic (+53/+29)	pvdQ → / ← lpxH	acyl‑homoserine lactone acylase PvdQ/UDP‑2,3‑diacylglucosamine hydrolase
RA	3,305,150	A→T	5.8%	L355Q (CTG→CAG)	PP_2906 ←	sensor histidine kinase
RA	3,305,153	A→T	6.0%	L354Q (CTG→CAG)	PP_2906 ←	sensor histidine kinase
RA	3,305,159	C→A	7.2%	R352L (CGC→CTC)	PP_2906 ←	sensor histidine kinase
RA	3,312,732	T→A	9.7%	intergenic (+30/‑132)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,317,256	C→G	7.6%	P608P (CCG→CCC)	treSA ←	trehalose synthase A
RA	3,334,996:1	+T	8.1%	coding (609/1704 nt)	PP_2932 ←	amidase family protein
RA	3,335,001	Δ1 bp	7.9%	coding (604/1704 nt)	PP_2932 ←	amidase family protein
RA	3,364,437	A→T	6.0%	S278T (TCG→ACG)	PP_2961 ←	LysR family transcriptional regulator
RA	3,377,695	C→A	6.9%	L258M (CTG→ATG)	tnpB →	transposase subunit B
RA	3,383,546	C→A	7.7%	intergenic (+7/+17)	PP_5547 → / ← PP_2985	hypothetical protein/hypothetical protein
RA	3,391,563	T→C	9.2%	W244R (TGG→CGG)	PP_2994 →	FMN‑binding oxidoreductase
RA	3,408,085	T→C	6.6%	N168D (AAC→GAC)	PP_3021 ←	LysE family transporter
RA	3,408,090	Δ1 bp	6.4%	coding (497/615 nt)	PP_3021 ←	LysE family transporter
RA	3,408,096:1	+T	6.3%	coding (491/615 nt)	PP_3021 ←	LysE family transporter
RA	3,408,101	G→A	6.2%	V162V (GTC→GTT)	PP_3021 ←	LysE family transporter
RA	3,422,549	G→A	5.2%	V222M (GTG→ATG)	PP_3038 →	TraC domain‑containing protein
RA	3,457,102	T→G	10.2%	E77A (GAG→GCG)	hbdH ←	3‑hydroxybutyrate dehydrogenase
RA	3,457,105	C→A	10.6%	R76L (CGC→CTC)	hbdH ←	3‑hydroxybutyrate dehydrogenase
RA	3,480,661	G→A	7.1%	L201L (CTG→TTG)	PP_3090 ←	OmpA domain‑containing protein
RA	3,489,703	G→C	6.6%	A577A (GCC→GCG)	clpV ←	protein ClpV1
RA	3,489,710	A→C	8.6%	L575R (CTG→CGG)	clpV ←	protein ClpV1
RA	3,489,714	G→C	7.0%	R574G (CGC→GGC)	clpV ←	protein ClpV1
RA	3,493,695	A→C	7.0%	L184R (CTG→CGG)	PP_3097 ←	hypothetical protein
RA	3,505,303	Δ1 bp	5.7%	coding (382/1074 nt)	PP_3103 ←	hypothetical protein
RA	3,505,308:1	+G	5.6%	coding (377/1074 nt)	PP_3103 ←	hypothetical protein
RA	3,506,377	C→A	5.8%	A5S (GCG→TCG)	PP_5574 ←	hypothetical protein
RA	3,519,309	Δ1 bp	8.0%	coding (113/228 nt)	PP_5580 →	hypothetical protein
RA	3,519,310	Δ1 bp	7.8%	coding (114/228 nt)	PP_5580 →	hypothetical protein
RA	3,533,413	A→G	6.8%	E16E (GAA→GAG)	atoA →	3‑oxoacid CoA‑transferase subunit A
RA	3,551,117	C→T	8.9%	Q76* (CAG→TAG) ‡	PP_3135 →	glycosyl transferase
RA	3,551,118	A→G	8.7%	Q76R (CAG→CGG) ‡	PP_3135 →	glycosyl transferase
RA	3,581,096	C→T	6.7%	A50V (GCG→GTG)	PP_3160 →	hypothetical protein
RA	3,584,941	G→T	11.1%	intergenic (+45/‑90)	benC → / → benD	benzoate 1,2‑dioxygenase electron transfer component/1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase
RA	3,584,942	A→C	10.9%	intergenic (+46/‑89)	benC → / → benD	benzoate 1,2‑dioxygenase electron transfer component/1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase
RA	3,599,764	G→C	6.6%	intergenic (‑17/+149)	PP_3175 ← / ← PP_3176	ferredoxin reductase dioxygenase subunit/MFS transporter
RA	3,599,765	G→C	6.5%	intergenic (‑18/+148)	PP_3175 ← / ← PP_3176	ferredoxin reductase dioxygenase subunit/MFS transporter
RA	3,602,918	G→C	6.6%	S94T (AGT→ACT)	garK →	glycerate kinase
RA	3,624,187	G→C	13.2%	intergenic (‑92/+81)	PP_3194 ← / ← PP_3195	hypothetical protein/hypothetical protein
RA	3,628,125	C→G	12.5%	intergenic (+11/‑129)	PP_3198 → / → PP_3199	2Fe‑2S ferredoxin/monooxygenase
RA	3,632,128	G→T	8.0%	E327* (GAG→TAG) ‡	PP_5590 →	hypothetical protein
RA	3,632,129	A→C	5.7%	E327A (GAG→GCG) ‡	PP_5590 →	hypothetical protein
RA	3,632,134	C→T	6.0%	L329L (CTG→TTG)	PP_5590 →	hypothetical protein
RA	3,692,662	T→A	7.8%	Q336L (CAG→CTG)	PP_3259 ←	acyl‑CoA dehydrogenase‑related protein
RA	3,704,938	A→G	6.4%	F369F (TTT→TTC)	paaZ ←	bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
RA	3,726,458	T→G	7.1%	F356L (TTT→TTG)	PP_3291 →	metallo‑beta‑lactamase family protein
RA	3,726,459	C→A	6.9%	Q357K (CAA→AAA)	PP_3291 →	metallo‑beta‑lactamase family protein
RA	3,727,163:1	+T	5.7%	coding (333/645 nt)	PP_3292 →	membrane protein
RA	3,727,168	T→A	6.3%	L113Q (CTG→CAG)	PP_3292 →	membrane protein
RA	3,727,171	T→A	6.2%	L114Q (CTG→CAG)	PP_3292 →	membrane protein
RA	3,727,176	Δ1 bp	6.0%	coding (346/645 nt)	PP_3292 →	membrane protein
RA	3,743,607	C→A	6.8%	A124A (GCC→GCA)	paoA →	aromatic aldehyde dehydrogenase 2Fe‑2S subunit
RA	3,755,655	C→T	6.5%	F351F (TTC→TTT)	PP_3319 →	GGDEF domain‑containing sensory box protein
RA	3,755,656	A→G	6.8%	K352E (AAA→GAA)	PP_3319 →	GGDEF domain‑containing sensory box protein
RA	3,758,664	C→A	5.5%	Q312K (CAA→AAA)	hemBB →	porphobilinogen synthase
RA	3,767,114	G→T	5.4%	T168T (ACG→ACT)	PP_3329 →	membrane protein
RA	3,788,441	G→C	6.6%	Y79* (TAC→TAG)	PP_3350 ←	hypothetical protein
RA	3,791,147	G→T	8.6%	G183V (GGC→GTC) ‡	PP_3353 →	sulfatase‑modifying protein
RA	3,791,148	C→T	8.6%	G183G (GGC→GGT) ‡	PP_3353 →	sulfatase‑modifying protein
RA	3,791,153	A→G	8.6%	E185G (GAA→GGA) ‡	PP_3353 →	sulfatase‑modifying protein
RA	3,791,154	A→C	8.6%	E185D (GAA→GAC) ‡	PP_3353 →	sulfatase‑modifying protein
RA	3,798,742:1	+A	8.0%	coding (201/831 nt)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,798,747	A→T	7.8%	W66R (TGG→AGG)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,798,752	Δ1 bp	7.8%	coding (191/831 nt)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,799,421	G→A	5.9%	A94A (GCG→GCA)	PP_3359 →	hydroxycinnamic acid degradation regulator
RA	3,799,429	T→C	6.2%	V97A (GTG→GCG)	PP_3359 →	hydroxycinnamic acid degradation regulator
RA	3,809,697	T→C	10.5%	E15E (GAA→GAG)	PP_3365 ←	acetolactate synthase
RA	3,829,573	T→G	6.2%	Q20P (CAG→CCG)	PP_3382 ←	gluconate 2‑dehydrogenase cytochrome c subunit
RA	3,829,578	A→G	6.2%	A18A (GCT→GCC)	PP_3382 ←	gluconate 2‑dehydrogenase cytochrome c subunit
RA	3,829,581	C→T	6.3%	A17A (GCG→GCA)	PP_3382 ←	gluconate 2‑dehydrogenase cytochrome c subunit
RA	3,879,983	A→G	6.2%	S592G (AGC→GGC)	mexF →	multidrug RND transporter MexF
RA	3,880,419	C→G	7.3%	A737G (GCC→GGC)	mexF →	multidrug RND transporter MexF
RA	3,880,422	C→G	7.3%	A738G (GCC→GGC)	mexF →	multidrug RND transporter MexF
RA	3,882,857	A→G	8.3%	intergenic (+56/‑169)	oprN → / → PP_3428	multidrug RND transporter outer membrane protein OprN/TPR repeat‑containing protein
RA	3,882,868	C→T	7.7%	intergenic (+67/‑158)	oprN → / → PP_3428	multidrug RND transporter outer membrane protein OprN/TPR repeat‑containing protein
RA	3,883,615	C→G	8.3%	A197G (GCC→GGC) ‡	PP_3428 →	TPR repeat‑containing protein
RA	3,883,616	C→G	8.4%	A197A (GCC→GCG) ‡	PP_3428 →	TPR repeat‑containing protein
RA	3,895,071	A→G	7.6%	L11P (CTA→CCA)	yegH ←	putative transporter
RA	3,895,074	C→T	6.4%	W10* (TGG→TAG)	yegH ←	putative transporter
RA	3,896,127	T→G	5.8%	Q221P (CAG→CCG)	PP_3439 ←	AraC family transcriptional regulator
RA	3,896,142	C→A	6.7%	R216L (CGG→CTG)	PP_3439 ←	AraC family transcriptional regulator
RA	3,920,317	C→T	6.8%	R498Q (CGG→CAG)	acs ←	acyl‑CoA synthetase
RA	3,928,400	A→G	6.6%	intergenic (+32/‑108)	peaE → / → PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein
RA	3,931,934	G→A	7.2%	A529A (GCC→GCT) ‡	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,931,935	G→T	7.1%	A529D (GCC→GAC) ‡	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,931,939	A→C	7.1%	F528V (TTC→GTC)	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,943,054	G→A	5.1%	L295F (CTC→TTC)	PP_3478 ←	secretion protein
RA	3,953,594	C→T	6.8%	V325M (GTG→ATG)	PP_5606 ←	YVTN beta‑propeller repeat‑containing protein
RA	3,996,941	G→T	10.0%	P89H (CCT→CAT)	PP_3525 ←	hypothetical protein
RA	3,996,944	A→C	10.0%	M88R (ATG→AGG)	PP_3525 ←	hypothetical protein
RA	4,002,726	A→G	6.6%	intergenic (+29/‑61)	allE → / → PP_3531	S‑ureidoglycine aminohydrolase/hypothetical protein
RA	4,002,727	C→G	6.4%	intergenic (+30/‑60)	allE → / → PP_3531	S‑ureidoglycine aminohydrolase/hypothetical protein
RA	4,002,728	C→T	5.6%	intergenic (+31/‑59)	allE → / → PP_3531	S‑ureidoglycine aminohydrolase/hypothetical protein
RA	4,012,721	C→T	6.4%	C171C (TGC→TGT)	mvaB →	hydroxymethylglutaryl‑CoA lyase
RA	4,022,850	C→G	6.5%	intergenic (‑501/+167)	PP_3547 ← / ← emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
RA	4,022,851	C→G	5.4%	intergenic (‑502/+166)	PP_3547 ← / ← emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
RA	4,033,158	C→A	6.8%	A251E (GCA→GAA)	PP_3555 →	transmembrane sensor
RA	4,047,705	C→T	5.8%	A71V (GCC→GTC)	quiA →	quinate dehydrogenase
RA	4,049,951	A→G	27.8%	intergenic (+40/‑61)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,954	C→G	28.9%	intergenic (+43/‑58)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,957	C→T	29.2%	intergenic (+46/‑55)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,051,307	T→C	5.6%	intergenic (+27/+16)	oprB‑III → / ← PP_3571	carbohydrate‑selective porin/acetylornithine deacetylase
RA	4,052,430	C→A	6.1%	T23T (ACG→ACT)	PP_3571 ←	acetylornithine deacetylase
RA	4,073,653	G→A	5.9%	intergenic (‑147/+477)	mdtA ← / ← PP_3586	multidrug transporter membrane fusion protein/transposase
RA	4,073,654	T→C	5.9%	intergenic (‑148/+476)	mdtA ← / ← PP_3586	multidrug transporter membrane fusion protein/transposase
RA	4,110,085	C→G	6.4%	N621K (AAC→AAG)	PP_3616 →	membrane protein
RA	4,110,087	T→A	6.3%	F622Y (TTC→TAC)	PP_3616 →	membrane protein
RA	4,110,089	C→G	6.1%	L623V (CTT→GTT)	PP_3616 →	membrane protein
RA	4,134,021	T→A	8.6%	A351A (GCA→GCT) ‡	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,134,023	C→G	8.1%	A351P (GCA→CCA) ‡	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,134,025	T→A	8.6%	Q350L (CAG→CTG)	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,141,212	T→A	7.7%	L44Q (CTG→CAG)	PP_3645 →	L‑proline amide hydrolase
RA	4,142,724	C→T	6.2%	I271I (ATC→ATT)	PP_3646 →	aldehyde dehydrogenase family protein
RA	4,142,725	A→G	6.2%	N272D (AAT→GAT)	PP_3646 →	aldehyde dehydrogenase family protein
RA	4,143,926	T→A	10.6%	intergenic (+35/‑88)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,143,927	T→A	10.6%	intergenic (+36/‑87)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,158,373	G→T	9.1%	L113L (CTG→CTT)	PP_3661 →	membrane protein
RA	4,160,705	G→C	9.6%	intergenic (+27/+94)	PP_3662 → / ← PP_3663	hypothetical protein/GGDEF domain‑containing protein
RA	4,160,706	G→C	9.7%	intergenic (+28/+93)	PP_3662 → / ← PP_3663	hypothetical protein/GGDEF domain‑containing protein
RA	4,162,143	T→C	19.1%	intergenic (‑43/+34)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,162,147	T→A	18.4%	intergenic (‑47/+30)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,162,148	T→A	20.2%	intergenic (‑48/+29)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,162,152	G→A	18.4%	intergenic (‑52/+25)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,165,671	C→T	7.3%	G159R (GGG→AGG)	PP_3666 ←	MHS family metabolite MFS transporter
RA	4,165,672	A→G	7.2%	P158P (CCT→CCC)	PP_3666 ←	MHS family metabolite MFS transporter
RA	4,180,811	G→A	7.1%	W211* (TGG→TAG)	PP_3678 →	hypothetical protein
RA	4,196,328	C→A	9.7%	intergenic (+126/+243)	PP_5618 → / ← PP_5619	Cro/CI family transcriptional regulator/hypothetical protein
RA	4,196,336	G→A	15.7%	intergenic (+134/+235)	PP_5618 → / ← PP_5619	Cro/CI family transcriptional regulator/hypothetical protein
RA	4,196,337	G→C	14.7%	intergenic (+135/+234)	PP_5618 → / ← PP_5619	Cro/CI family transcriptional regulator/hypothetical protein
RA	4,196,338	T→C	14.7%	intergenic (+136/+233)	PP_5618 → / ← PP_5619	Cro/CI family transcriptional regulator/hypothetical protein
RA	4,196,346	T→G	11.9%	intergenic (+144/+225)	PP_5618 → / ← PP_5619	Cro/CI family transcriptional regulator/hypothetical protein
RA	4,214,436	C→A	10.5%	G187V (GGG→GTG)	PP_3696 ←	hypothetical protein
RA	4,237,680	T→G	10.2%	E205A (GAG→GCG) ‡	catB ←	muconate cycloisomerase 1
RA	4,237,681	C→A	8.5%	E205* (GAG→TAG) ‡	catB ←	muconate cycloisomerase 1
RA	4,246,347	C→T	7.0%	intergenic (‑29/+6)	alr ← / ← aruI	alanine racemase/2‑ketoarginine decarboxylase AruI
RA	4,252,246	G→C	5.1%	intergenic (‑170/+70)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,256,787	A→T	6.6%	L55Q (CTG→CAG)	PP_3729 ←	amino acid‑binding protein‑like protein
RA	4,260,665	C→G	8.1%	G714A (GGC→GCC)	PP_3734 ←	ABC transporter permease
RA	4,260,670	C→G	8.0%	R712R (CGG→CGC)	PP_3734 ←	ABC transporter permease
RA	4,260,675	C→G	8.1%	A711P (GCG→CCG)	PP_3734 ←	ABC transporter permease
RA	4,260,680	C→G	6.9%	G709A (GGC→GCC)	PP_3734 ←	ABC transporter permease
RA	4,264,637	A→G	9.7%	S296G (AGC→GGC)	vanA →	vanillate O‑demethylase oxygenase subunit
RA	4,301,102	A→G	6.7%	T75A (ACG→GCG)	PP_3774 →	hypothetical protein
RA	4,338,381	C→T	5.1%	A326V (GCG→GTG)	PP_3812 →	lipase
RA	4,340,119	A→T	10.2%	intergenic (+60/‑271)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,120	G→C	11.1%	intergenic (+61/‑270)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,348,749	A→G	58.8%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,367,496	C→A	10.7%	G199V (GGC→GTC)	PP_3844 ←	D‑aminopeptidase
RA	4,382,865	G→A	6.0%	intergenic (‑32/+230)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,382,866	T→C	6.0%	intergenic (‑33/+229)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,445,294	C→G	5.3%	G117A (GGG→GCG) ‡	nicE ←	maleate isomerase
RA	4,445,295	C→G	5.3%	G117R (GGG→CGG) ‡	nicE ←	maleate isomerase
RA	4,449,780	Δ1 bp	6.7%	intergenic (+251/‑191)	nicR → / → nicA	HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A
RA	4,449,788	G→C	9.7%	intergenic (+259/‑183)	nicR → / → nicA	HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A
RA	4,449,791	G→C	9.5%	intergenic (+262/‑180)	nicR → / → nicA	HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A
RA	4,468,253	G→A	6.1%	G152S (GGC→AGC)	PP_3959 →	voltage‑gated chloride channel family protein
RA	4,480,610	C→A	7.8%	A145A (GCC→GCA)	PP_3972 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	4,480,611	T→G	7.7%	C146G (TGC→GGC)	PP_3972 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	4,503,833	C→T	9.5%	intergenic (+38/‑60)	xanP → / → tusD	xanthine permease/sulfur transfer protein complex subunit TusD
RA	4,503,834	A→G	9.5%	intergenic (+39/‑59)	xanP → / → tusD	xanthine permease/sulfur transfer protein complex subunit TusD
RA	4,512,756	G→A	9.3%	G760G (GGC→GGT)	ftsK ←	DNA translocase FtsK
RA	4,514,648	C→T	6.7%	A130T (GCA→ACA)	ftsK ←	DNA translocase FtsK
RA	4,528,397	T→A	8.4%	intergenic (+28/‑48)	purB → / → PP_4017	adenylosuccinate lyase/hypothetical protein
RA	4,530,069	T→A	13.6%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,530,070	T→A	13.6%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,540,091	C→T	6.2%	G80S (GGC→AGC)	nudC ←	NADH pyrophosphatase
RA	4,540,103	A→G	6.0%	C76R (TGC→CGC)	nudC ←	NADH pyrophosphatase
RA	4,560,899	T→A	7.4%	I232F (ATC→TTC)	PP_4048 ←	hypothetical protein
RA	4,560,900	T→A	7.6%	E231D (GAA→GAT)	PP_4048 ←	hypothetical protein
RA	4,609,479	C→T	5.5%	T420M (ACG→ATG)	PP_4080 →	hypothetical protein
RA	4,700,847	G→A	5.4%	intergenic (‑114/+36)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,705,448	T→C	10.5%	intergenic (‑140/+37)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,705,449	C→T	10.5%	intergenic (‑141/+36)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,705,459	T→A	16.7%	intergenic (‑151/+26)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,705,460	T→A	16.8%	intergenic (‑152/+25)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,721,679	C→T	13.3%	intergenic (‑38/+26)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,721,680	G→T	13.4%	intergenic (‑39/+25)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,721,681	A→C	13.0%	intergenic (‑40/+24)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,721,682	A→G	12.9%	intergenic (‑41/+23)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,728,546	A→C	6.2%	V57G (GTC→GGC)	sucD ←	succinyl‑CoA synthetase subunit alpha
RA	4,740,884	C→G	15.0%	intergenic (+75/+677)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,886	T→A	15.0%	intergenic (+77/+675)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,887	T→A	15.0%	intergenic (+78/+674)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,889	C→G	14.5%	intergenic (+80/+672)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,273:1	+C	78.4%	intergenic (+464/+288)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	21.6%	intergenic (+465/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,275	A→G	78.6%	intergenic (+466/+286)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	C→G	10.7%	intergenic (+467/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,277	C→T	89.2%	intergenic (+468/+284)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,280	C→T	89.2%	intergenic (+471/+281)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283	C→G	100%	intergenic (+474/+278)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,285	2 bp→CT	100%	intergenic (+476/+275)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298:1	+T	65.0%	intergenic (+489/+263)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,299	C→T	34.7%	intergenic (+490/+262)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,301	A→C	33.0%	intergenic (+492/+260)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,302	A→G	65.0%	intergenic (+493/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,304	C→G	34.6%	intergenic (+495/+257)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,305	Δ1 bp	65.0%	intergenic (+496/+256)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,750,059	Δ1 bp	7.6%	intergenic (+35/+37)	PP_4203 → / ← mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
RA	4,750,060	Δ1 bp	7.6%	intergenic (+36/+36)	PP_4203 → / ← mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
RA	4,750,068:1	+A	5.7%	intergenic (+44/+28)	PP_4203 → / ← mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
RA	4,750,068:2	+A	5.7%	intergenic (+44/+28)	PP_4203 → / ← mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
RA	4,758,181	G→C	9.1%	R470P (CGC→CCC)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,758,186	G→C	9.4%	intergenic (+1/+20)	ompQ → / ← pvdP	outer membrane pyoverdine efflux protein/pyoverdine biosynthesis‑like protein
RA	4,758,192	A→G	10.1%	intergenic (+7/+14)	ompQ → / ← pvdP	outer membrane pyoverdine efflux protein/pyoverdine biosynthesis‑like protein
RA	4,767,863	C→T	8.0%	intergenic (+32/+37)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,767,864	A→G	7.8%	intergenic (+33/+36)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,779,452	Δ1 bp	11.3%	intergenic (‑141/+20)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,779,454:1	+G	11.3%	intergenic (‑143/+18)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,796,649	A→G	8.8%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,657	C→T	11.3%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,659	G→C	10.8%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,662	G→C	10.2%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,664	A→G	10.3%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,672	C→T	9.9%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,808,234	G→C	12.5%	intergenic (‑298/‑257)	PP_4234 ← / → dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
RA	4,808,237	G→C	11.9%	intergenic (‑301/‑254)	PP_4234 ← / → dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
RA	4,821,377	C→G	5.0%	W3286C (TGG→TGC)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,821,852	C→A	5.1%	G3128V (GGC→GTC)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,823,385	C→G	6.4%	G2617A (GGC→GCC) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,823,386	C→G	6.6%	G2617R (GGC→CGC) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,829,798	T→A	9.5%	K479N (AAA→AAT)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,839,266	C→G	9.8%	intergenic (+43/‑137)	ccoP‑I → / → PP_4254	cbb3‑type cytochrome c oxidase subunit/hypothetical protein
RA	4,839,269	C→G	11.8%	intergenic (+46/‑134)	ccoP‑I → / → PP_4254	cbb3‑type cytochrome c oxidase subunit/hypothetical protein
RA	4,842,941	Δ1 bp	15.3%	intergenic (+40/‑257)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,842,949:1	+G	17.1%	intergenic (+48/‑249)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,895,757	T→A	10.7%	L56Q (CTG→CAG)	PP_4304 →	VIC family cation transporter
RA	4,895,760	T→A	9.4%	L57Q (CTG→CAG)	PP_4304 →	VIC family cation transporter
RA	4,900,110	A→G	10.3%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,114	G→A	10.3%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,115	T→C	10.6%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,119	C→T	10.6%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,902,716	G→A	5.8%	V196M (GTG→ATG) ‡	PP_4310 →	hydantoin racemase
RA	4,902,717	T→C	6.8%	V196A (GTG→GCG) ‡	PP_4310 →	hydantoin racemase
RA	4,905,770	G→A	6.1%	R100C (CGC→TGC)	PP_4314 ←	hypothetical protein
RA	4,911,824	C→G	5.8%	Q134H (CAG→CAC)	ccmH ←	cytochrome c heme lyase subunit
RA	4,911,827:1	+T	5.6%	coding (399/477 nt)	ccmH ←	cytochrome c heme lyase subunit
RA	4,911,836	Δ1 bp	6.1%	coding (390/477 nt)	ccmH ←	cytochrome c heme lyase subunit
RA	4,911,840	C→G	6.5%	R129P (CGT→CCT)	ccmH ←	cytochrome c heme lyase subunit
RA	4,918,010	G→A	13.7%	V122I (GTC→ATC) ‡	PP_4328 →	hypothetical protein
RA	4,918,011	T→C	13.7%	V122A (GTC→GCC) ‡	PP_4328 →	hypothetical protein
RA	4,941,244	G→A	7.2%	T217T (ACG→ACA)	PP_4348 →	cystathionine beta‑lyase
RA	4,958,146	A→T	6.0%	L200Q (CTG→CAG)	fliG ←	flagellar motor switch protein
RA	4,958,639	T→G	7.4%	M36L (ATG→CTG)	fliG ←	flagellar motor switch protein
RA	4,958,644	C→T	6.7%	R34Q (CGG→CAG)	fliG ←	flagellar motor switch protein
RA	4,958,647	A→G	6.5%	L33P (CTG→CCG)	fliG ←	flagellar motor switch protein
RA	4,958,652	C→A	6.8%	Q31H (CAG→CAT)	fliG ←	flagellar motor switch protein
RA	4,992,977	Δ1 bp	5.6%	coding (886/1233 nt)	bkdAA →	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
RA	5,003,504	A→G	9.7%	D414G (GAT→GGT)	PP_4409 →	site‑specific recombinase
RA	5,013,331	T→C	12.1%	V35A (GTG→GCG)	PP_5678 →	hypothetical protein
RA	5,013,335	G→C	12.4%	L36L (CTG→CTC)	PP_5678 →	hypothetical protein
RA	5,013,339	G→A	9.9%	A38T (GCG→ACG)	PP_5678 →	hypothetical protein
RA	5,039,700	G→T	6.5%	I284I (ATC→ATA) ‡	PP_4446 ←	group II intron‑encoding maturase
RA	5,039,701	A→C	6.6%	I284S (ATC→AGC) ‡	PP_4446 ←	group II intron‑encoding maturase
RA	5,077,282	G→T	8.8%	intergenic (+29/+79)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,077,285	A→C	9.0%	intergenic (+32/+76)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,077,525	T→C	5.5%	T427A (ACC→GCC)	mgtE ←	magnesium transporter
RA	5,079,174	T→A	14.5%	intergenic (‑371/+26)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,079,177	T→A	14.4%	intergenic (‑374/+23)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,096,455	G→A	6.8%	T120I (ACC→ATC)	argT ←	lysine/arginine/ornithine ABC transporter substrate‑binding protein
RA	5,096,901	G→A	5.3%	intergenic (‑88/‑71)	argT ← / → PP_mr66	lysine/arginine/ornithine ABC transporter substrate‑binding protein/P6
RA	5,144,047	C→T	6.9%	D108N (GAC→AAC)	PP_4528 ←	hypothetical protein
RA	5,151,910	G→T	6.0%	P21H (CCT→CAT)	PP_5696 ←	hypothetical protein
RA	5,156,036	C→T	7.5%	A149A (GCC→GCT)	PP_4539 →	LysR family transcriptional regulator
RA	5,173,292	T→C	13.9%	intergenic (‑285/+47)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,295	G→C	10.5%	intergenic (‑288/+44)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,296	G→C	12.1%	intergenic (‑289/+43)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,299	G→A	11.3%	intergenic (‑292/+40)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,974	G→A	6.3%	R352C (CGC→TGC)	fadD‑II ←	long‑chain‑fatty acid‑‑CoA ligase
RA	5,201,162	G→C	7.4%	T134S (ACC→AGC)	PP_4582 ←	membrane protein
RA	5,212,520	C→T	8.5%	intergenic (+36/+58)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,523	G→A	8.2%	intergenic (+39/+55)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,534:1	+G	5.3%	intergenic (+50/+44)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,537	C→G	5.3%	intergenic (+53/+41)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,540	Δ1 bp	5.3%	intergenic (+56/+38)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,222,953	G→C	61.5%	intergenic (‑316/+63)	PP_4602 ← / ← PP_4603	AraC family transcriptional regulator/transposase
RA	5,227,322	Δ1 bp	10.3%	coding (1785/2391 nt)	PP_4606 ←	ferric siderophore receptor
RA	5,227,327	C→G	11.0%	A594P (GCA→CCA)	PP_4606 ←	ferric siderophore receptor
RA	5,227,331:1	+T	10.3%	coding (1776/2391 nt)	PP_4606 ←	ferric siderophore receptor
RA	5,229,239	Δ1 bp	6.6%	intergenic (‑133/+43)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,243	C→G	6.3%	intergenic (‑137/+39)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,255,900	G→T	5.4%	A128S (GCC→TCC)	folM →	bifunctional dihydrofolate reductase/dihydromonapterin reductase
RA	5,258,237	T→A	5.6%	D323V (GAC→GTC)	PP_4635 ←	trans‑2‑enoyl‑CoA reductase
RA	5,268,565	C→T	8.2%	A368V (GCG→GTG)	PP_4643 →	xanthine/uracil permease family protein
RA	5,304,643	T→C	7.7%	E886G (GAG→GGG)	recC ←	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
RA	5,307,460	G→A	9.3%	intergenic (‑161/+25)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,313,324	C→G	12.1%	intergenic (‑595/+119)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,313,327	C→G	12.5%	intergenic (‑598/+116)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,338,098	C→G	16.2%	intergenic (+57/‑227)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,338,101	C→G	16.2%	intergenic (+60/‑224)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,351,390	A→C	7.0%	intergenic (+21/+55)	PP_4706 → / ← PP_4707	hypothetical protein/OsmY‑like protein
RA	5,351,393	G→T	6.8%	intergenic (+24/+52)	PP_4706 → / ← PP_4707	hypothetical protein/OsmY‑like protein
RA	5,352,025	G→T	7.3%	intergenic (‑230/+34)	PP_4707 ← / ← pnp	OsmY‑like protein/polyribonucleotide nucleotidyltransferase
RA	5,352,028	A→C	7.5%	intergenic (‑233/+31)	PP_4707 ← / ← pnp	OsmY‑like protein/polyribonucleotide nucleotidyltransferase
RA	5,363,111	G→T	5.6%	L235I (CTC→ATC)	glmM ←	phosphoglucosamine mutase
RA	5,363,112	A→C	5.6%	D234E (GAT→GAG)	glmM ←	phosphoglucosamine mutase
RA	5,366,334	G→A	7.2%	V90V (GTC→GTT)	ftsH ←	integral membrane ATP‑dependent zinc metallopeptidase
RA	5,381,315	T→C	6.3%	intergenic (+32/+33)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,316	T→A	5.4%	intergenic (+33/+32)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,317	G→A	5.4%	intergenic (+34/+31)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,384,575	G→C	8.6%	G331R (GGC→CGC) ‡	lldP →	L‑lactate permease
RA	5,384,576	G→C	8.5%	G331A (GGC→GCC) ‡	lldP →	L‑lactate permease
RA	5,389,315	T→A	5.1%	L926Q (CTG→CAG)	dld2 →	D‑lactate dehydrogenase
RA	5,389,601	G→T	6.4%	intergenic (+252/‑68)	dld2 → / → PP_4738	D‑lactate dehydrogenase/hypothetical protein
RA	5,409,800	A→G	6.2%	M375T (ATG→ACG)	stcD ←	N‑methylproline demethylase
RA	5,422,811	C→T	7.6%	intergenic (‑44/+106)	tesB ← / ← PP_4763	acyl‑CoA thioesterase II/acetyltransferase
RA	5,422,814	A→G	7.1%	intergenic (‑47/+103)	tesB ← / ← PP_4763	acyl‑CoA thioesterase II/acetyltransferase
RA	5,424,538	Δ1 bp	6.6%	coding (89/915 nt)	PP_4764 →	histone deacetylase family protein
RA	5,424,545	C→G	7.2%	H32Q (CAC→CAG)	PP_4764 →	histone deacetylase family protein
RA	5,424,546	C→G	7.1%	L33V (CTG→GTG)	PP_4764 →	histone deacetylase family protein
RA	5,426,134	G→C	7.5%	G208R (GGC→CGC)	PP_4765 →	hypothetical protein
RA	5,426,138	G→C	7.1%	W209S (TGG→TCG) ‡	PP_4765 →	hypothetical protein
RA	5,426,139	G→C	7.1%	W209C (TGG→TGC) ‡	PP_4765 →	hypothetical protein
RA	5,426,143	G→C	7.8%	A211P (GCG→CCG)	PP_4765 →	hypothetical protein
RA	5,430,440	A→G	7.9%	intergenic (‑74/+87)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,444	A→G	8.0%	intergenic (‑78/+83)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,445:1	+A	8.1%	intergenic (‑79/+82)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,452	Δ1 bp	7.8%	intergenic (‑86/+75)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,454	C→T	7.7%	intergenic (‑88/+73)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,458	C→T	7.6%	intergenic (‑92/+69)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,451,654:1	+G	7.8%	coding (137/1518 nt)	lnt →	apolipoprotein N‑acyltransferase
RA	5,451,660	A→G	11.5%	E48G (GAG→GGG)	lnt →	apolipoprotein N‑acyltransferase
RA	5,451,664	C→G	11.7%	L49L (CTC→CTG)	lnt →	apolipoprotein N‑acyltransferase
RA	5,451,668	C→T	11.3%	P51S (CCG→TCG)	lnt →	apolipoprotein N‑acyltransferase
RA	5,451,673	Δ1 bp	6.8%	coding (156/1518 nt)	lnt →	apolipoprotein N‑acyltransferase
RA	5,458,940:1	+A	16.7%	intergenic (+17/‑45)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,458,946	Δ1 bp	16.1%	intergenic (+23/‑39)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,483,626	A→T	10.3%	Q31L (CAG→CTG)	purH →	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
RA	5,484,358	G→A	6.2%	C275Y (TGC→TAC)	purH →	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
RA	5,489,826:1	+C	6.5%	coding (260/597 nt)	PP_4825 →	MarC family membrane protein
RA	5,489,830	Δ1 bp	6.5%	coding (264/597 nt)	PP_4825 →	MarC family membrane protein
RA	5,503,184	T→G	6.8%	L29R (CTG→CGG)	oprC →	copper receptor OprC
RA	5,507,652	G→C	6.2%	A289P (GCG→CCG)	cycA →	D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,507,655	G→C	6.2%	A290P (GCG→CCG)	cycA →	D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,531,058	A→C	7.4%	R421R (CGT→CGG)	braE ←	high‑affinity branched‑chain amino acid ABC transporter permease BraE
RA	5,531,630	A→G	6.0%	F231L (TTC→CTC)	braE ←	high‑affinity branched‑chain amino acid ABC transporter permease BraE
RA	5,541,768	T→A	10.9%	I327F (ATC→TTC)	dnaB ←	replicative DNA helicase
RA	5,541,769	T→A	10.4%	E326D (GAA→GAT)	dnaB ←	replicative DNA helicase
RA	5,541,778	C→A	8.2%	E323D (GAG→GAT)	dnaB ←	replicative DNA helicase
RA	5,541,782	C→T	8.6%	R322H (CGT→CAT)	dnaB ←	replicative DNA helicase
RA	5,549,653	T→A	6.3%	intergenic (+18/‑154)	PP_t47 → / → PP_4881	tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA	5,566,464	T→A	13.0%	Q358L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,467	T→A	13.2%	Q357L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,569,002	T→C	5.7%	A150A (GCA→GCG)	tsaE ←	ATPase
RA	5,569,751	C→A	8.4%	L183L (CTG→CTT)	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,569,756	T→G	7.4%	K182Q (AAG→CAG)	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,582,864	T→A	6.6%	H178L (CAC→CTC)	PP_4911 ←	hypothetical protein
RA	5,582,867	T→A	6.7%	Q177L (CAG→CTG)	PP_4911 ←	hypothetical protein
RA	5,582,870	T→A	6.7%	Q176L (CAG→CTG)	PP_4911 ←	hypothetical protein
RA	5,582,873	T→A	6.7%	E175V (GAG→GTG)	PP_4911 ←	hypothetical protein
RA	5,602,232	T→A	8.9%	D434V (GAT→GTT)	PP_4924 ←	subtilase family serine protease
RA	5,602,235	G→C	9.0%	A433G (GCC→GGC)	PP_4924 ←	subtilase family serine protease
RA	5,602,238	T→A	9.2%	N432I (AAC→ATC)	PP_4924 ←	subtilase family serine protease
RA	5,606,122	G→T	6.0%	H690N (CAT→AAT)	cyaB ←	cyclolysin secretion/processing ATP‑binding protein CyaB
RA	5,615,042	G→T	8.5%	P177P (CCC→CCA)	hldE ←	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,634,508	T→G	13.1%	intergenic (+33/+350)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,634,509	C→A	14.2%	intergenic (+34/+349)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,651,425	T→G	7.8%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,651,428	C→A	7.7%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,655,677:1	+A	13.2%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,682	T→G	17.9%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,687	C→A	19.7%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,692	Δ1 bp	17.5%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,658,167	T→G	6.6%	H57Q (CAT→CAG)	sahR →	methionine metabolism transcriptional regulator
RA	5,659,735	T→A	5.9%	L243Q (CTG→CAG)	metK →	methionine adenosyltransferase
RA	5,659,737	A→T	5.8%	T244S (ACT→TCT) ‡	metK →	methionine adenosyltransferase
RA	5,659,739	T→A	5.8%	T244T (ACT→ACA) ‡	metK →	methionine adenosyltransferase
RA	5,660,233	G→T	5.7%	intergenic (+35/‑194)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,685,956	G→C	6.5%	P331P (CCC→CCG) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,685,958	G→C	6.5%	P331A (CCC→GCC) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,685,965	G→C	6.7%	R328R (CGC→CGG) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,685,967	G→C	6.9%	R328G (CGC→GGC) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,697,369:1	+A	5.2%	intergenic (+23/‑54)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,697,374	Δ1 bp	5.3%	intergenic (+28/‑49)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,698,800	T→C	7.6%	intergenic (+34/‑133)	hslU → / → PP_5002	protease HslVU ATPase subunit/hypothetical protein
RA	5,698,803	T→C	7.8%	intergenic (+37/‑130)	hslU → / → PP_5002	protease HslVU ATPase subunit/hypothetical protein
RA	5,699,460	C→T	6.0%	intergenic (+150/‑119)	PP_5002 → / → phaA	hypothetical protein/poly(3‑hydroxyalkanoate) polymerase
RA	5,736,578:1	+G	7.4%	coding (924/1674 nt)	hutU ←	urocanate hydratase
RA	5,736,589	Δ1 bp	7.2%	coding (913/1674 nt)	hutU ←	urocanate hydratase
RA	5,737,655	G→C	12.7%	intergenic (‑154/+48)	hutU ← / ← PP_5034	urocanate hydratase/hypothetical protein
RA	5,740,523	T→G	12.8%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,526	A→T	13.9%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,527	A→T	13.9%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,746,541	G→C	9.8%	intergenic (+32/+67)	PP_5042 → / ← PP_5043	hypothetical protein/PhoPQ‑activated pathogenicity‑like protein
RA	5,746,544	G→C	11.3%	intergenic (+35/+64)	PP_5042 → / ← PP_5043	hypothetical protein/PhoPQ‑activated pathogenicity‑like protein
RA	5,753,541	T→G	15.4%	intergenic (+46/‑320)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,753,542	C→A	15.3%	intergenic (+47/‑319)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,798,249	C→T	9.1%	intergenic (‑294/+80)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,798,254	T→C	12.2%	intergenic (‑299/+75)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,798,257	G→A	11.1%	intergenic (‑302/+72)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,798,262	A→G	12.3%	intergenic (‑307/+67)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,808,040	A→G	8.0%	intergenic (+119/+36)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,808,041	T→C	7.1%	intergenic (+120/+35)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,808,042	G→A	6.7%	intergenic (+121/+34)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,808,043	C→T	7.2%	intergenic (+122/+33)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,815,587	C→T	7.0%	intergenic (+15/+76)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,815,592	G→T	6.9%	intergenic (+20/+71)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,815,595	A→C	6.8%	intergenic (+23/+68)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,815,600	A→G	7.0%	intergenic (+28/+63)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,816,909	A→G	10.9%	intergenic (+39/+90)	PP_5092 → / ← pilT	NLP/P60 protein/twitching motility protein
RA	5,816,983	A→G	7.4%	intergenic (+113/+16)	PP_5092 → / ← pilT	NLP/P60 protein/twitching motility protein
RA	5,827,774	G→C	5.8%	A211P (GCC→CCC)	mtgA →	monofunctional biosynthetic peptidoglycan transglycosylase
RA	5,830,754	G→T	5.6%	A482A (GCC→GCA)	ftsY ←	signal recognition particle protein translocation receptor GTPase
RA	5,854,714	A→G	5.5%	V226V (GTA→GTG)	tcyP →	sodium/cystine symporter
RA	5,863,456	C→A	7.5%	V163V (GTG→GTT)	PP_5138 ←	LysR family transcriptional regulator
RA	5,882,228	G→C	6.7%	E245Q (GAG→CAG)	serA →	bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase
RA	5,882,233	G→C	7.0%	L246L (CTG→CTC)	serA →	bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase
RA	5,883,651	C→G	7.0%	A60G (GCC→GGC)	PP_5157 →	hypothetical protein
RA	5,886,263	C→G	5.9%	S270T (AGT→ACT)	PP_5161 ←	lysophospholipase
RA	5,886,270	G→T	6.2%	P268T (CCG→ACG)	PP_5161 ←	lysophospholipase
RA	5,890,849	G→T	7.9%	intergenic (+81/+39)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,903,220	G→T	12.3%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,221	A→C	11.9%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,887	G→A	5.4%	intergenic (+87/+20)	PP_5176 → / ← spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
RA	5,914,167	G→A	10.9%	intergenic (+3/+150)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,180	C→T	13.1%	intergenic (+16/+137)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,182	C→G	13.4%	intergenic (+18/+135)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,184	A→G	13.1%	intergenic (+20/+133)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,197	T→C	8.0%	intergenic (+33/+120)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,921,504	A→G	6.7%	E91G (GAG→GGG)	PP_5191 →	hypothetical protein
RA	5,922,436	A→T	6.0%	L684H (CTC→CAC)	gcvP‑II ←	glycine dehydrogenase
RA	5,948,738	T→A	5.1%	intergenic (‑63/+19)	PP_mr62 ← / ← trxA	Pseudomon‑Rho regulatory region/thioredoxin I
RA	5,948,739	T→A	5.0%	intergenic (‑64/+18)	PP_mr62 ← / ← trxA	Pseudomon‑Rho regulatory region/thioredoxin I
RA	5,960,051	A→T	5.9%	noncoding (74/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,960,052	A→T	6.3%	noncoding (73/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,963,902	T→G	10.3%	Y216D (TAT→GAT)	PP_5229 →	hypothetical protein
RA	5,963,907	C→A	9.9%	I217I (ATC→ATA)	PP_5229 →	hypothetical protein
RA	5,984,751	C→A	7.0%	G142V (GGC→GTC)	ycaC‑II ←	putative hydrolase
RA	5,984,756	G→T	8.4%	A140A (GCC→GCA)	ycaC‑II ←	putative hydrolase
RA	5,984,759	A→C	7.3%	D139E (GAT→GAG)	ycaC‑II ←	putative hydrolase
RA	5,984,764	T→G	9.3%	T138P (ACC→CCC)	ycaC‑II ←	putative hydrolase
RA	5,988,865	G→A	30.5%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,875	T→C	29.3%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,880	C→T	26.1%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,881	G→T	26.8%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,882	C→T	27.2%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,885	A→G	26.5%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,891	G→C	26.8%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,893	C→G	26.9%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,896	C→T	26.7%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,900	C→G	26.6%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,904	C→T	26.9%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,906	C→T	27.1%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,945	C→A	28.5%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,950	C→T	27.8%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,951	A→G	27.8%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,961	T→C	31.6%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,967	Δ1 bp	31.5%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,997,245:1	+G	20.0%	intergenic (‑158/+42)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	5,997,250	Δ1 bp	20.6%	intergenic (‑163/+37)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,002,454	C→T	5.0%	intergenic (‑98/+48)	amaA ← / ← amaB	L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase
RA	6,005,050	G→C	5.6%	intergenic (+32/‑144)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,053	A→T	5.3%	intergenic (+35/‑141)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,056	G→C	5.5%	intergenic (+38/‑138)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,011,545	T→G	11.7%	I114S (ATC→AGC)	rep →	single‑stranded DNA dependent ATPase
RA	6,011,549	G→C	11.6%	K115N (AAG→AAC)	rep →	single‑stranded DNA dependent ATPase
RA	6,011,552	G→C	11.7%	A116A (GCG→GCC)	rep →	single‑stranded DNA dependent ATPase
RA	6,011,556	C→A	12.2%	L118M (CTG→ATG)	rep →	single‑stranded DNA dependent ATPase
RA	6,023,215	G→A	20.6%	intergenic (+74/+70)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,023,216	T→C	20.8%	intergenic (+75/+69)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,027,278	A→T	7.7%	F212Y (TTC→TAC) ‡	PP_5277 ←	MFS transporter
RA	6,027,279	A→T	7.7%	F212I (TTC→ATC) ‡	PP_5277 ←	MFS transporter
RA	6,033,817:1	+G	8.8%	coding (84/1212 nt)	dfp →	bifunctional 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase
RA	6,033,822	T→A	7.9%	L30Q (CTG→CAG)	dfp →	bifunctional 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase
RA	6,033,827	Δ1 bp	8.0%	coding (94/1212 nt)	dfp →	bifunctional 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase
RA	6,039,292	C→T	10.5%	intergenic (‑256/+38)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,039,296	G→T	8.6%	intergenic (‑260/+34)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,039,297	A→C	8.8%	intergenic (‑261/+33)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,039,301	A→G	8.9%	intergenic (‑265/+29)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,040,850	T→A	5.4%	intergenic (+19/+15)	PP_5292 → / ← PP_5293	catabolite repression control protein/hypothetical protein
RA	6,052,582	A→G	5.4%	intergenic (+87/+83)	PP_5304 → / ← PP_5305	lipoprotein/epimerase/dehydratase‑like protein
RA	6,052,583	A→C	5.4%	intergenic (+88/+82)	PP_5304 → / ← PP_5305	lipoprotein/epimerase/dehydratase‑like protein
RA	6,065,592	T→C	9.6%	I146T (ATC→ACC)	phoB →	two‑component system DNA‑binding response regulator PhoB
RA	6,065,594	G→T	10.0%	E147* (GAG→TAG) ‡	phoB →	two‑component system DNA‑binding response regulator PhoB
RA	6,065,595	A→C	10.0%	E147A (GAG→GCG) ‡	phoB →	two‑component system DNA‑binding response regulator PhoB
RA	6,065,597	G→A	10.2%	V148I (GTC→ATC)	phoB →	two‑component system DNA‑binding response regulator PhoB
RA	6,066,228	G→T	6.5%	R99L (CGG→CTG)	phoR →	two‑component system sensor histidine kinase
RA	6,080,201	A→T	5.7%	Q30L (CAG→CTG)	PP_5332 →	hypothetical protein
RA	6,080,204	A→T	5.5%	Q31L (CAG→CTG)	PP_5332 →	hypothetical protein
RA	6,082,957	G→A	5.7%	R45C (CGT→TGT)	purK ←	5‑(carboxyamino)imidazole ribonucleotide synthase
MC JC	6,098,315	Δ9 bp	100%	coding (822‑830/867 nt)	PP_5350 ←	RpiR family transcriptional regulator
RA	6,104,098	G→A	7.2%	intergenic (+20/‑94)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,104,109	T→A	11.1%	intergenic (+31/‑83)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,104,110	T→A	11.1%	intergenic (+32/‑82)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,107,381	A→G	5.6%	I276I (ATT→ATC)	pdxY ←	pyridoxamine kinase
RA	6,127,005	A→G	6.2%	intergenic (+40/+27)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,128,482	A→T	6.9%	intergenic (‑542/‑380)	PP_5375 ← / → PP_5376	LysR family transcriptional regulator/hypothetical protein
RA	6,129,216	A→C	7.8%	intergenic (+22/+45)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,226	C→T	12.6%	intergenic (+32/+35)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,229	A→T	12.6%	intergenic (+35/+32)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,232	A→G	12.5%	intergenic (+38/+29)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,242	G→T	11.8%	intergenic (+48/+19)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,163,633	C→T	8.9%	R569H (CGT→CAT)	PP_5405 ←	transposase

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	171343–172965	176326–172968	4–4984	25 [22]	[24] 26	PP_16SA–[PP_5SA]	PP_16SA,PP_23SA,[PP_5SA]
*	*	÷	NC_002947	176617–178395	181757–178398	4–5141	25 [23]	[22] 26	PP_16SB–[PP_r01]	PP_16SB,PP_23SB,[PP_r01]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	15797 =	47 (0.790)	4 (0.070)	4/228	NT	7.9%	intergenic (+47/‑792)	gyrB/PP_5421	DNA gyrase subunit B/hypothetical protein
	?	NC_002947	15834 =	48 (0.840)					intergenic (+84/‑755)	gyrB/PP_5421	DNA gyrase subunit B/hypothetical protein
*	?	NC_002947	82066 =	59 (0.990)	5 (0.080) +GC	4/236	NT	9.2%	intergenic (+43/+85)	PP_0071/qor‑I	hypothetical protein/quinone oxidoreductase
	?	NC_002947	= 86765	41 (0.680)					intergenic (‑48/+97)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
*	?	NC_002947	= 90357	94 (1.570)	11 (0.200)	7/216	NT	11.9%	intergenic (+32/+90)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
	?	NC_002947	= 90414	78 (1.450)					intergenic (+89/+33)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
*	?	NC_002947	= 100459	68 (1.140)	5 (0.100)	5/206	NT	7.7%	intergenic (‑51/+71)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
	?	NC_002947	= 100507	62 (1.210)					intergenic (‑99/+23)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
*	?	NC_002947	= 142231	74 (1.240)	4 (0.070)	4/228	NT	6.0%	coding (175/822 nt)	PP_0134	hypothetical protein
	?	NC_002947	= 142322	54 (0.950)					coding (266/822 nt)	PP_0134	hypothetical protein
*	?	NC_002947	= 174906	NA (NA)	3 (0.050)	3/230	NT	NA	noncoding (1704/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174936	NA (NA)					noncoding (1734/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	= 175541	NA (NA)	6 (0.100)	6/232	NT	NA	noncoding (2339/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 175557	NA (NA)					noncoding (2355/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	= 176399	NA (NA)	29 (0.510) +CGAAA	18/230	NT	26.0%	intergenic (+43/‑420)	PP_5SA/PP_16SB	5S ribosomal RNA/16S ribosomal RNA
	?	NC_002947	= 182013	86 (1.440)					intergenic (+2/+63)	PP_5SB/PP_0160	5S ribosomal RNA/ferrioxamine receptor
*	?	NC_002947	200302 =	66 (1.100)	5 (0.090)	4/230	NT	9.3%	coding (5808/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	202307 =	34 (0.590)					coding (7813/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	= 258505	60 (1.000)	6 (0.110)	5/222	NT	9.6%	coding (39/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein
	?	NC_002947	= 258519	58 (1.050)					coding (53/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein
*	?	NC_002947	= 258625	51 (0.850)	8 (0.140)	8/232	NT	12.3%	coding (159/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein
	?	NC_002947	= 258642	65 (1.120)					coding (176/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein
*	?	NC_002947	= 312731	49 (0.820)	9 (0.170)	5/212	NT	17.1%	coding (483/831 nt)	fdhD	protein sulfur transferase
	?	NC_002947	= 312759	44 (0.830)					coding (455/831 nt)	fdhD	protein sulfur transferase
*	?	NC_002947	316005 =	50 (0.840)	7 (0.140)	7/204	NT	14.4%	intergenic (+17/+66)	cysQ/PP_0262	3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein
	?	NC_002947	316053 =	41 (0.810)					intergenic (+65/+18)	cysQ/PP_0262	3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein
*	?	NC_002947	= 356696	58 (0.970)	4 (0.070)	4/228	NT	6.4%	coding (38/1377 nt)	tdcG‑I	L‑serine dehydratase
	?	NC_002947	= 356713	61 (1.070)					coding (55/1377 nt)	tdcG‑I	L‑serine dehydratase
*	?	NC_002947	380836 =	64 (1.070)	8 (0.170)	7/194	NT	16.2%	intergenic (+23/+86)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
	?	NC_002947	380916 =	31 (0.640)					intergenic (+103/+6)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
*	?	NC_002947	387994 =	47 (0.790)	4 (0.070)	4/232	NT	8.5%	coding (1131/1254 nt)	glyA‑I	serine hydroxymethyltransferase
	?	NC_002947	388011 =	41 (0.710)					coding (1148/1254 nt)	glyA‑I	serine hydroxymethyltransferase
*	?	NC_002947	401360 =	43 (0.720)	14 (0.260)	10/214	NT	30.0%	coding (943/1059 nt)	PP_0334	transposase
	?	NC_002947	3968949 =	27 (0.510)					coding (1033/1179 nt)	PP_3498	transposase
*	?	NC_002947	= 401690	61 (1.020)	5 (0.120) +38 bp	5/164	NT	16.0%	intergenic (+214/+215)	PP_0334/PP_0335	transposase/glutathione S‑transferase family protein
	?	NC_002947	= 5033278	16 (0.270)					intergenic (+395/‑15)	PP_4435/PP_4437	hypothetical protein/transposase
*	?	NC_002947	401757 =	63 (1.050)	10 (0.180)	7/222	NT	14.2%	intergenic (+281/+148)	PP_0334/PP_0335	transposase/glutathione S‑transferase family protein
	?	NC_002947	401835 =	63 (1.140)					intergenic (+359/+70)	PP_0334/PP_0335	transposase/glutathione S‑transferase family protein
*	?	NC_002947	= 413995	53 (0.890)	7 (0.120)	7/232	NT	11.9%	intergenic (+12/‑191)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
	?	NC_002947	= 414083	52 (0.900)					intergenic (+100/‑103)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
*	?	NC_002947	423331 =	72 (1.200)	4 (0.070)	4/230	NT	5.6%	coding (620/2787 nt)	PP_0348	hypothetical protein
	?	NC_002947	423368 =	66 (1.150)					coding (583/2787 nt)	PP_0348	hypothetical protein
*	?	NC_002947	428666 =	61 (1.020)	3 (0.050)	3/228	NT	5.4%	coding (344/957 nt)	PP_0351	transmembrane sensor
	?	NC_002947	428700 =	48 (0.840)					coding (310/957 nt)	PP_0351	transmembrane sensor
*	?	NC_002947	443897 =	72 (1.200)	4 (0.070)	4/228	NT	5.3%	coding (57/681 nt)	bioD	dethiobiotin synthetase
	?	NC_002947	443922 =	74 (1.300)					coding (82/681 nt)	bioD	dethiobiotin synthetase
*	?	NC_002947	452108 =	75 (1.250)	5 (0.090)	4/226	NT	6.6%	coding (23/1281 nt)	aruC	acetylornithine aminotransferase
	?	NC_002947	452135 =	71 (1.260)					coding (50/1281 nt)	aruC	acetylornithine aminotransferase
*	?	NC_002947	458833 =	64 (1.070)	5 (0.090)	4/218	NT	8.0%	intergenic (‑51/+113)	pqqC/pqqB	pyrroloquinoline‑quinone synthase/coenzyme PQQ synthesis protein B
	?	NC_002947	458918 =	57 (1.050)					intergenic (‑136/+28)	pqqC/pqqB	pyrroloquinoline‑quinone synthase/coenzyme PQQ synthesis protein B
*	?	NC_002947	478264 =	54 (0.900)	6 (0.130)	6/180	NT	15.5%	intergenic (+9/+101)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478359 =	25 (0.560)					intergenic (+104/+6)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
*	?	NC_002947	= 499220	67 (1.120)	4 (0.080)	3/192	NT	7.1%	intergenic (+61/‑235)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
	?	NC_002947	= 499259	51 (1.060)					intergenic (+100/‑196)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
*	?	NC_002947	530833 =	48 (0.800)	3 (0.050)	3/234	NT	5.8%	coding (744/960 nt)	birA	bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
	?	NC_002947	530860 =	51 (0.870)					coding (771/960 nt)	birA	bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
*	?	NC_002947	= 596453	42 (0.700)	8 (0.130)	6/238	NT	15.0%	coding (414/711 nt)	PP_0507	ABC transporter ATP‑binding protein
	?	NC_002947	= 596487	49 (0.830)					coding (380/711 nt)	PP_0507	ABC transporter ATP‑binding protein
*	?	NC_002947	= 634174	44 (0.730)	6 (0.110)	6/218	NT	11.9%	coding (477/2016 nt)	PP_0546	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 634185	49 (0.900)					coding (488/2016 nt)	PP_0546	sigma‑54 dependent transcriptional regulator
*	?	NC_002947	= 637157	52 (0.870)	5 (0.090)	4/228	NT	8.4%	coding (32/630 nt)	PP_0548	phenylacrylic acid decarboxylase PadA
	?	NC_002947	= 637180	59 (1.040)					coding (55/630 nt)	PP_0548	phenylacrylic acid decarboxylase PadA
*	?	NC_002947	652768 =	58 (0.970)	4 (0.070)	4/226	NT	7.5%	intergenic (‑102/+16)	dsbD‑I/ctpL	thiol/disulfide interchange protein 1/methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	652811 =	44 (0.780)					coding (1935/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
*	?	NC_002947	669053 =	50 (0.840)	8 (0.140)	7/228	NT	14.0%	coding (492/2355 nt)	pbpC	peptidoglycan glycosyltransferase
	?	NC_002947	669088 =	51 (0.900)					coding (527/2355 nt)	pbpC	peptidoglycan glycosyltransferase
*	?	NC_002947	= 726940	64 (1.070)	7 (0.120)	5/226	NT	10.0%	intergenic (‑184/+83)	PP_0620/PP_0621	GntR family transcriptional regulator/hypothetical protein
	?	NC_002947	5571519 =	66 (1.170)					intergenic (+90/+51)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
*	?	NC_002947	= 727778	65 (1.090)	5 (0.090)	4/224	NT	7.5%	coding (590/1020 nt)	bamD	outer membrane protein assembly factor BamD
	?	NC_002947	= 727789	63 (1.130)					coding (579/1020 nt)	bamD	outer membrane protein assembly factor BamD
*	?	NC_002947	= 728713	58 (0.970)	5 (0.090)	5/226	NT	8.6%	coding (199/963 nt)	rluD	23S rRNA pseudouridine(1911/1915/1917) synthase
	?	NC_002947	= 728729	52 (0.920)					coding (215/963 nt)	rluD	23S rRNA pseudouridine(1911/1915/1917) synthase
*	?	NC_002947	= 738369	53 (0.890)	3 (0.050)	3/226	NT	5.3%	coding (184/624 nt)	coaE	dephospho‑CoA kinase
	?	NC_002947	= 738398	58 (1.030)					coding (155/624 nt)	coaE	dephospho‑CoA kinase
*	?	NC_002947	742007 =	NA (NA)	5 (0.090)	5/226	NT	NA	coding (105/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	1426180 =	NA (NA)					coding (71/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	= 745621	NA (NA)	13 (0.220)	6/234	NT	NA	coding (881/1533 nt)	PP_0637	transposase
	?	NC_002947	= 745654	NA (NA)					coding (848/1533 nt)	PP_0637	transposase
*	?	NC_002947	= 762361	59 (0.990)	4 (0.070)	4/228	NT	6.7%	coding (390/933 nt)	mdh	malate dehydrogenase
	?	NC_002947	= 762380	56 (0.980)					coding (409/933 nt)	mdh	malate dehydrogenase
*	?	NC_002947	= 796843	57 (0.950)	3 (0.060)	3/208	NT	5.4%	intergenic (+42/‑148)	PP_0681/PP_0682	hypothetical protein/inner membrane protein
	?	NC_002947	= 796881	55 (1.060)					intergenic (+80/‑110)	PP_0681/PP_0682	hypothetical protein/inner membrane protein
*	?	NC_002947	= 808629	67 (1.120)	6 (0.100)	6/230	NT	8.7%	coding (732/1335 nt)	PP_0695	hypothetical protein
	?	NC_002947	= 808637	61 (1.060)					coding (724/1335 nt)	PP_0695	hypothetical protein
*	?	NC_002947	= 830700	60 (1.000)	5 (0.090)	5/224	NT	8.1%	coding (1072/1098 nt)	PP_0714	PerM family transporter
	?	NC_002947	= 830705	57 (1.020)					coding (1077/1098 nt)	PP_0714	PerM family transporter
*	?	NC_002947	831493 =	73 (1.220)	4 (0.070)	4/230	NT	5.8%	coding (764/1515 nt)	PP_0715	outer membrane efflux protein
	?	NC_002947	831529 =	61 (1.060)					coding (800/1515 nt)	PP_0715	outer membrane efflux protein
*	?	NC_002947	867938 =	75 (1.250)	12 (0.230)	7/210	NT	16.3%	intergenic (+33/+144)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	867998 =	58 (1.110)					intergenic (+93/+84)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
*	?	NC_002947	898151 =	52 (0.870)	12 (0.200)	5/238	NT	18.1%	coding (32/336 nt)	PP_0781	hypothetical protein
	?	NC_002947	898176 =	57 (0.960)					coding (57/336 nt)	PP_0781	hypothetical protein
*	?	NC_002947	917692 =	69 (1.150)	4 (0.070)	4/218	NT	6.6%	intergenic (‑123/+76)	PP_0798/opdC	GGDEF domain‑containing protein/histidine‑specific outer membrane porin D
	?	NC_002947	917754 =	50 (0.920)					intergenic (‑185/+14)	PP_0798/opdC	GGDEF domain‑containing protein/histidine‑specific outer membrane porin D
*	?	NC_002947	919681 =	69 (1.150)	4 (0.070)	4/232	NT	5.5%	intergenic (‑149/+42)	PP_5458/PP_0800	hypothetical protein/hypothetical protein
	?	NC_002947	919709 =	72 (1.240)					intergenic (‑177/+14)	PP_5458/PP_0800	hypothetical protein/hypothetical protein
*	?	NC_002947	= 940447	75 (1.250)	4 (0.070)	4/238	NT	6.5%	coding (5178/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 944273	41 (0.690)					coding (1352/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 1013230	32 (0.530)	11 (0.240)	12/180	NT	28.2%	intergenic (+55/+76)	prfC/potF‑I	peptide chain release factor 3/putrescine‑binding protein
	?	NC_002947	= 1013258	32 (0.710)					intergenic (+83/+48)	prfC/potF‑I	peptide chain release factor 3/putrescine‑binding protein
*	?	NC_002947	1025270 =	61 (1.020)	4 (0.090)	4/186	NT	9.4%	intergenic (‑121/+108)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1025363 =	30 (0.650)					intergenic (‑214/+15)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	= 1037796	49 (0.820)	6 (0.120)	5/194	NT	10.6%	intergenic (+38/+78)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
	?	NC_002947	= 1037828	62 (1.280)					intergenic (+70/+46)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
*	?	NC_002947	1073523 =	50 (0.840)	4 (0.070)	4/228	NT	7.6%	coding (1338/1452 nt)	gatA	glutamyl‑tRNA(Gln) amidotransferase subunit A
	?	NC_002947	1073561 =	50 (0.880)					coding (1300/1452 nt)	gatA	glutamyl‑tRNA(Gln) amidotransferase subunit A
*	?	NC_002947	1074921 =	65 (1.090)	6 (0.100)	6/238	NT	8.4%	coding (264/309 nt)	gatC	aspartyl/glutamyl‑tRNA(Asn/Gln) amidotransferase subunit C
	?	NC_002947	1074951 =	66 (1.110)					coding (234/309 nt)	gatC	aspartyl/glutamyl‑tRNA(Asn/Gln) amidotransferase subunit C
*	?	NC_002947	= 1083147	64 (1.070)	7 (0.130)	7/224	NT	9.9%	coding (2797/3822 nt)	PP_0938	hypothetical protein
	?	NC_002947	= 1083171	67 (1.200)					coding (2821/3822 nt)	PP_0938	hypothetical protein
*	?	NC_002947	1096638 =	51 (0.850)	4 (0.070)	4/230	NT	7.9%	coding (329/726 nt)	lptB	ABC transporter ATP‑binding protein
	?	NC_002947	1096660 =	44 (0.770)					coding (307/726 nt)	lptB	ABC transporter ATP‑binding protein
*	?	NC_002947	= 1102893	36 (0.600)	5 (0.090)	4/224	NT	11.7%	intergenic (+27/‑91)	ttg2E/ttg2F	toluene‑tolerance protein/BolA family protein
	?	NC_002947	= 1102923	42 (0.750)					intergenic (+57/‑61)	ttg2E/ttg2F	toluene‑tolerance protein/BolA family protein
*	?	NC_002947	1114875 =	31 (0.520)	9 (0.190)	9/190	NT	24.5%	intergenic (‑64/+115)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1114951 =	31 (0.650)					intergenic (‑140/+39)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
*	?	NC_002947	= 1114899	32 (0.530)	5 (0.110)	4/190	NT	15.1%	intergenic (‑88/+91)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	= 1114925	31 (0.650)					intergenic (‑114/+65)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
*	?	NC_002947	1126591 =	76 (1.270)	6 (0.110)	6/228	NT	8.2%	intergenic (‑40/+110)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
	?	NC_002947	1126663 =	63 (1.110)					intergenic (‑112/+38)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
*	?	NC_002947	1126668 =	65 (1.090)	10 (0.180)	9/222	NT	15.1%	intergenic (‑117/+33)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
	?	NC_002947	1126693 =	52 (0.940)					intergenic (‑142/+8)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
*	?	NC_002947	1132446 =	60 (1.000)	6 (0.100)	6/234	NT	8.9%	coding (177/288 nt)	PP_0993	hypothetical protein
	?	NC_002947	1132473 =	64 (1.100)					coding (150/288 nt)	PP_0993	hypothetical protein
*	?	NC_002947	= 1149945	64 (1.070)	4 (0.070)	4/224	NT	6.4%	intergenic (‑186/+71)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	= 2354586	58 (1.040)					intergenic (‑12/+46)	PP_2068/PP_2069	multidrug MFS transporter membrane fusion protein/multidrug MFS transporter outer membrane protein
*	?	NC_002947	1167534 =	58 (0.970)	4 (0.070)	4/224	NT	6.6%	coding (472/729 nt)	pgl	6‑phosphogluconolactonase
	?	NC_002947	1167575 =	59 (1.060)					coding (513/729 nt)	pgl	6‑phosphogluconolactonase
*	?	NC_002947	1192305 =	74 (1.240)	4 (0.070)	4/228	NT	5.4%	coding (1351/2076 nt)	upxB	phosphatase
	?	NC_002947	1192344 =	70 (1.230)					coding (1312/2076 nt)	upxB	phosphatase
*	?	NC_002947	= 1196277	61 (1.020)	5 (0.090)	5/232	NT	7.7%	coding (332/1755 nt)	xcpQ	type II secretion pathway protein XcpQ
	?	NC_002947	= 1196306	61 (1.050)					coding (361/1755 nt)	xcpQ	type II secretion pathway protein XcpQ
*	?	NC_002947	= 1223780	52 (0.870)	8 (0.140)	8/228	NT	13.7%	coding (272/771 nt)	gltL	glutamate/aspartate ABC transporter ATP binding protein
	?	NC_002947	= 1223795	51 (0.900)					coding (257/771 nt)	gltL	glutamate/aspartate ABC transporter ATP binding protein
*	?	NC_002947	= 1268668	79 (1.320)	4 (0.070)	4/232	NT	5.0%	coding (770/1341 nt)	PP_1109	GntR family transcriptional regulator
	?	NC_002947	= 1268685	75 (1.300)					coding (753/1341 nt)	PP_1109	GntR family transcriptional regulator
*	?	NC_002947	1273319 =	83 (1.390)	5 (0.090) +GCAGGCGA	5/224	NT	6.9%	intergenic (+104/+64)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	6052544 =	62 (1.040)					intergenic (+49/+121)	PP_5304/PP_5305	lipoprotein/epimerase/dehydratase‑like protein
*	?	NC_002947	= 1285024	63 (1.050)	7 (0.120)	6/238	NT	10.0%	coding (249/795 nt)	PP_1122	OmpA family protein
	?	NC_002947	= 1285063	63 (1.060)					coding (288/795 nt)	PP_1122	OmpA family protein
*	?	NC_002947	1296508 =	NA (NA)	8 (0.130)	7/240	NT	NA	intergenic (‑255/‑311)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296528 =	NA (NA)					intergenic (‑275/‑291)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
*	?	NC_002947	= 1296796	NA (NA)	3 (0.050)	3/226	NT	NA	intergenic (‑543/‑23)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	= 1296820	NA (NA)					coding (2/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1340018	51 (0.850)	5 (0.090)	5/228	NT	8.5%	coding (583/897 nt)	PP_1164	LysR family transcriptional regulator
	?	NC_002947	= 1340032	59 (1.040)					coding (597/897 nt)	PP_1164	LysR family transcriptional regulator
*	?	NC_002947	1392884 =	69 (1.150)	3 (0.070)	4/166	NT	7.7%	intergenic (+48/‑138)	PP_1214/ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
	?	NC_002947	1392984 =	24 (0.580)					intergenic (+148/‑38)	PP_1214/ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
*	?	NC_002947	= 1418455	53 (0.890)	4 (0.070)	4/226	NT	6.6%	intergenic (+16/+83)	PP_t14/PP_1241	tRNA‑Ser/hypothetical protein
	?	NC_002947	= 1418473	63 (1.120)					intergenic (+34/+65)	PP_t14/PP_1241	tRNA‑Ser/hypothetical protein
*	?	NC_002947	1419553 =	25 (0.420)	5 (0.110)	4/176	NT	27.5%	intergenic (‑36/+101)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1419647 =	8 (0.180)					intergenic (‑130/+7)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1419584	19 (0.320)	6 (0.140)	6/176	NT	35.4%	intergenic (‑67/+70)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419614	8 (0.180)					intergenic (‑97/+40)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1421210	48 (0.800)	3 (0.050)	3/230	NT	5.9%	coding (683/891 nt)	PP_1245	hypothetical protein
	?	NC_002947	= 1421225	49 (0.850)					coding (698/891 nt)	PP_1245	hypothetical protein
*	?	NC_002947	= 1426815	NA (NA)	14 (0.240)	8/238	NT	NA	coding (706/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1426858	NA (NA)					coding (749/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	= 1436589	69 (1.150)	4 (0.070)	4/230	NT	5.6%	coding (482/948 nt)	PP_1257	1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	= 1436627	70 (1.220)					coding (444/948 nt)	PP_1257	1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
*	?	NC_002947	= 1440042	28 (0.470)	6 (0.110)	6/226	NT	14.6%	intergenic (‑366/‑293)	yveA/PP_1260	aspartate‑proton symporter/transposase
	?	NC_002947	= 5453079	44 (0.780)					intergenic (+44/‑311)	lnt/PP_4791	apolipoprotein N‑acyltransferase/transposase
*	?	NC_002947	1443111 =	65 (1.090)	5 (0.110)	5/190	NT	11.3%	intergenic (‑42/+134)	ghrB/PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
	?	NC_002947	1443179 =	27 (0.570)					intergenic (‑110/+66)	ghrB/PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
*	?	NC_002947	= 1444708	66 (1.100)	4 (0.070)	4/236	NT	5.6%	coding (325/1530 nt)	PP_1263	fusaric acid resistance protein
	?	NC_002947	= 1444721	69 (1.170)					coding (338/1530 nt)	PP_1263	fusaric acid resistance protein
*	?	NC_002947	1447655 =	51 (0.850)	7 (0.120)	7/238	NT	12.2%	coding (1746/2178 nt)	PP_1264	fusaric acid resistance protein
	?	NC_002947	1447716 =	50 (0.840)					coding (1807/2178 nt)	PP_1264	fusaric acid resistance protein
*	?	NC_002947	1487013 =	17 (0.280)	18 (0.400)	13/180	NT	57.4%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1487103 =	14 (0.310)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	= 1487042	18 (0.300)	6 (0.130)	6/180	NT	30.4%	intergenic (+51/+79)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	= 1487072	14 (0.310)					intergenic (+81/+49)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	1493716 =	61 (1.020)	4 (0.070)	4/228	NT	6.6%	coding (1162/2277 nt)	PP_1306	Pyocin S‑type killer domain‑containing protein
	?	NC_002947	1493747 =	55 (0.970)					coding (1131/2277 nt)	PP_1306	Pyocin S‑type killer domain‑containing protein
*	?	NC_002947	1511002 =	71 (1.190)	8 (0.140)	7/236	NT	10.2%	pseudogene (607/1851 nt)	PP_1325	putative lipoprotein
	?	NC_002947	1511025 =	71 (1.210)					pseudogene (584/1851 nt)	PP_1325	putative lipoprotein
*	?	NC_002947	1531788 =	32 (0.530)	6 (0.130)	6/192	NT	18.6%	coding (130/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	1531884 =	27 (0.560)					coding (34/630 nt)	PP_1344	hypothetical protein
*	?	NC_002947	= 1531811	27 (0.450)	3 (0.060)	3/192	NT	11.0%	coding (107/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	= 1531859	27 (0.560)					coding (59/630 nt)	PP_1344	hypothetical protein
*	?	NC_002947	= 1556514	44 (0.730)	5 (0.090)	5/230	NT	10.5%	coding (376/852 nt)	purU‑II	formyltetrahydrofolate hydrolase
	?	NC_002947	= 1556524	43 (0.750)					coding (386/852 nt)	purU‑II	formyltetrahydrofolate hydrolase
*	?	NC_002947	1594437 =	59 (0.990)	6 (0.100)	6/232	NT	9.8%	coding (1028/1320 nt)	kgtP	alpha‑ketoglutarate permease
	?	NC_002947	1594464 =	54 (0.930)					coding (1001/1320 nt)	kgtP	alpha‑ketoglutarate permease
*	?	NC_002947	= 1600503	77 (1.290)	5 (0.090)	3/230	NT	6.1%	coding (723/2292 nt)	bglX	beta‑D‑glucoside glucohydrolase
	?	NC_002947	= 1600523	80 (1.390)					coding (703/2292 nt)	bglX	beta‑D‑glucoside glucohydrolase
*	?	NC_002947	= 1607234	56 (0.940)	6 (0.100)	6/230	NT	10.0%	coding (342/888 nt)	PP_1408	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase
	?	NC_002947	= 1607244	54 (0.940)					coding (332/888 nt)	PP_1408	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase
*	?	NC_002947	1612894 =	54 (0.900)	5 (0.090)	5/220	NT	10.1%	coding (649/693 nt)	ung	uracil‑DNA glycosylase
	?	NC_002947	1612936 =	40 (0.730)					coding (691/693 nt)	ung	uracil‑DNA glycosylase
*	?	NC_002947	1622527 =	53 (0.890)	16 (0.310)	13/204	NT	28.6%	intergenic (+7/+59)	PP_1421/PP_1422	sensor histidine kinase TctE/hypothetical protein
	?	NC_002947	1622577 =	35 (0.690)					intergenic (+57/+9)	PP_1421/PP_1422	sensor histidine kinase TctE/hypothetical protein
*	?	NC_002947	= 1656736	67 (1.120)	4 (0.070)	4/222	NT	6.2%	coding (75/4527 nt)	PP_1449	hypothetical protein
	?	NC_002947	= 1656757	59 (1.070)					coding (54/4527 nt)	PP_1449	hypothetical protein
*	?	NC_002947	1695753 =	58 (0.970)	6 (0.110)	5/224	NT	11.3%	coding (388/648 nt)	PP_1491	CheW domain‑containing protein
	?	NC_002947	1695786 =	40 (0.720)					coding (421/648 nt)	PP_1491	CheW domain‑containing protein
*	?	NC_002947	1701613 =	71 (1.190)	4 (0.070)	4/222	NT	5.9%	intergenic (+16/‑78)	prfB/lysS	peptide chain release factor 2/lysine‑‑tRNA ligase
	?	NC_002947	1701643 =	62 (1.120)					intergenic (+46/‑48)	prfB/lysS	peptide chain release factor 2/lysine‑‑tRNA ligase
*	?	NC_002947	= 1703711	71 (1.190)	4 (0.070)	4/238	NT	5.3%	coding (352/717 nt)	PP_1497	TetR family transcriptional regulator
	?	NC_002947	= 1703738	72 (1.210)					coding (379/717 nt)	PP_1497	TetR family transcriptional regulator
*	?	NC_002947	1744332 =	55 (0.920)	3 (0.050)	3/226	NT	5.5%	coding (585/597 nt)	PP_1542	hypothetical protein
	?	NC_002947	1744377 =	52 (0.920)					coding (540/597 nt)	PP_1542	hypothetical protein
*	?	NC_002947	= 1747750	107 (1.790)	8 (0.150)	5/220	NT	7.2%	intergenic (‑200/+331)	PP_5473/PP_5474	LuxR family transcriptional regulator/hypothetical protein
	?	NC_002947	= 1747789	108 (1.970)					intergenic (‑239/+292)	PP_5473/PP_5474	LuxR family transcriptional regulator/hypothetical protein
*	?	NC_002947	1755413 =	57 (0.950)	5 (0.090)	5/232	NT	8.1%	intergenic (+86/‑114)	PP_1558/PP_1559	hypothetical protein/holin
	?	NC_002947	1755435 =	59 (1.020)					intergenic (+108/‑92)	PP_1558/PP_1559	hypothetical protein/holin
*	?	NC_002947	= 1757543	55 (0.920)	4 (0.070)	4/236	NT	6.3%	coding (557/1686 nt)	PP_1563	terminase large subunit
	?	NC_002947	= 1757566	64 (1.090)					coding (580/1686 nt)	PP_1563	terminase large subunit
*	?	NC_002947	1780109 =	68 (1.140)	15 (0.300)	12/202	NT	25.8%	intergenic (+26/+80)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
	?	NC_002947	1780171 =	29 (0.580)					intergenic (+88/+18)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
*	?	NC_002947	= 1838122	72 (1.200)	5 (0.090)	4/220	NT	6.5%	intergenic (+27/+77)	PP_1642/PP_1643	hypothetical protein/membrane protein
	?	NC_002947	= 1838184	79 (1.440)					intergenic (+89/+15)	PP_1642/PP_1643	hypothetical protein/membrane protein
*	?	NC_002947	1844176 =	61 (1.020)	18 (0.310)	18/230	NT	22.3%	coding (660/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 2179419	67 (1.170)					intergenic (+175/+93)	PP_1931/PP_5486	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1844179	63 (1.050)	6 (0.100)	6/232	NT	8.1%	coding (657/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	2177745 =	76 (1.310)					intergenic (+103/‑63)	PP_5485/PP_1931	GNAT family acetyltransferase/hypothetical protein
*	?	NC_002947	1899260 =	83 (1.390)	7 (0.130)	7/210	NT	9.1%	intergenic (+288/‑232)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899320 =	67 (1.280)					intergenic (+348/‑172)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	= 1899282	79 (1.320)	4 (0.090) +28 bp	3/184	NT	7.4%	intergenic (+310/‑210)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	2749651 =	51 (0.850)					intergenic (+81/+33)	PP_2405/PP_2406	hypothetical protein/quinate/shikimate dehydrogenase
*	?	NC_002947	= 1906749	53 (0.890)	3 (0.060)	3/188	NT	5.7%	intergenic (+47/+81)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	= 1906791	57 (1.220)					intergenic (+89/+39)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	1923945 =	59 (0.990)	5 (0.090)	5/232	NT	7.6%	coding (137/795 nt)	PP_1723	2‑aminoethylphosphonate ABC transporter permease
	?	NC_002947	1923969 =	64 (1.110)					coding (113/795 nt)	PP_1723	2‑aminoethylphosphonate ABC transporter permease
*	?	NC_002947	1925745 =	88 (1.470)	6 (0.130)	5/192	NT	8.7%	intergenic (‑2/+98)	PP_1725/PP_1726	hypothetical protein/ABC transporter substrate‑binding protein
	?	NC_002947	1925810 =	56 (1.170)					intergenic (‑67/+33)	PP_1725/PP_1726	hypothetical protein/ABC transporter substrate‑binding protein
*	?	NC_002947	1967188 =	9 (0.150)	18 (0.410)	12/174	NT	64.8%	intergenic (+15/+104)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	1967284 =	13 (0.300)					intergenic (+111/+8)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	= 1967220	7 (0.120)	13 (0.300)	11/174	NT	59.0%	intergenic (+47/+72)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	= 1967250	13 (0.300)					intergenic (+77/+42)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	1976257 =	82 (1.370)	7 (0.130)	7/212	NT	8.9%	intergenic (+42/‑123)	pheA/PP_1770	bifunctional chorismate mutase/prephenate dehydratase/3‑phosphoshikimate 1‑carboxyvinyltransferase
	?	NC_002947	1976305 =	70 (1.320)					intergenic (+90/‑75)	pheA/PP_1770	bifunctional chorismate mutase/prephenate dehydratase/3‑phosphoshikimate 1‑carboxyvinyltransferase
*	?	NC_002947	= 2048853	60 (1.000)	8 (0.160)	7/206	NT	11.9%	intergenic (+49/+90)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	= 2048910	67 (1.300)					intergenic (+106/+33)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
*	?	NC_002947	= 2048892	59 (0.990)	10 (0.170)	8/230	NT	14.1%	intergenic (+88/+51)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	= 2048902	65 (1.130)					intergenic (+98/+41)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
*	?	NC_002947	= 2050638	37 (0.620)	7 (0.170)	6/166	NT	21.7%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2050674	25 (0.600)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
*	?	NC_002947	2063203 =	66 (1.100)	7 (0.150)	6/190	NT	13.7%	intergenic (+17/‑190)	PP_1838/PP_1839	membrane protein/hypothetical protein
	?	NC_002947	2063297 =	36 (0.760)					intergenic (+111/‑96)	PP_1838/PP_1839	membrane protein/hypothetical protein
*	?	NC_002947	= 2069216	49 (0.820)	5 (0.090)	5/218	NT	9.9%	intergenic (+20/‑454)	PP_t19/PP_1846	tRNA‑Ser/group II intron‑encoding maturase
	?	NC_002947	= 2069228	47 (0.860)					intergenic (+32/‑442)	PP_t19/PP_1846	tRNA‑Ser/group II intron‑encoding maturase
*	?	NC_002947	2071205 =	52 (0.870)	8 (0.160)	8/204	NT	14.9%	intergenic (+114/+113)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
	?	NC_002947	2071278 =	47 (0.920)					intergenic (+187/+40)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
*	?	NC_002947	= 2078299	63 (1.050)	7 (0.140)	6/206	NT	11.6%	intergenic (+41/+74)	PP_1853/PP_1854	LysR family transcriptional regulator/hypothetical protein
	?	NC_002947	= 2078346	53 (1.030)					intergenic (+88/+27)	PP_1853/PP_1854	LysR family transcriptional regulator/hypothetical protein
*	?	NC_002947	= 2087724	53 (0.890)	8 (0.140)	4/224	NT	13.4%	intergenic (+494/+424)	PP_1865/aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
	?	NC_002947	4022795 =	54 (0.970)					intergenic (‑446/+222)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
*	?	NC_002947	2098458 =	55 (0.920)	3 (0.060)	3/212	NT	5.8%	coding (1475/2358 nt)	PP_1875	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	2098507 =	48 (0.910)					coding (1426/2358 nt)	PP_1875	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	2100003 =	32 (0.530)	15 (0.310)	10/194	NT	29.2%	intergenic (‑71/‑134)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	2100098 =	47 (0.970)					intergenic (‑166/‑39)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	= 2100025	33 (0.550)	8 (0.170)	6/194	NT	17.8%	intergenic (‑93/‑112)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	= 2100074	47 (0.970)					intergenic (‑142/‑63)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	2119838 =	54 (0.900)	6 (0.100)	5/232	NT	10.6%	coding (946/2355 nt)	PP_1885	hypothetical protein
	?	NC_002947	2119861 =	49 (0.850)					coding (969/2355 nt)	PP_1885	hypothetical protein
*	?	NC_002947	= 2157781	65 (1.090)	4 (0.070)	4/232	NT	5.8%	coding (88/741 nt)	fabG	3‑oxoacyl‑ACP reductase subunit
	?	NC_002947	= 2157797	68 (1.170)					coding (104/741 nt)	fabG	3‑oxoacyl‑ACP reductase subunit
*	?	NC_002947	= 2176729	66 (1.100)	6 (0.100)	5/234	NT	8.6%	coding (273/387 nt)	arsR‑I	arsenic resistance transcriptional regulator
	?	NC_002947	= 2176754	64 (1.100)					coding (248/387 nt)	arsR‑I	arsenic resistance transcriptional regulator
*	?	NC_002947	2273924 =	48 (0.800)	6 (0.100)	6/232	NT	11.0%	coding (486/1041 nt)	PP_2004	AraC family transcriptional regulator
	?	NC_002947	2273958 =	51 (0.880)					coding (452/1041 nt)	PP_2004	AraC family transcriptional regulator
*	?	NC_002947	2275684 =	74 (1.240)	8 (0.150)	7/220	NT	11.4%	intergenic (‑152/+37)	PP_2005/PP_2006	hypothetical protein/membrane protein
	?	NC_002947	2275709 =	56 (1.020)					intergenic (‑177/+12)	PP_2005/PP_2006	hypothetical protein/membrane protein
*	?	NC_002947	2296108 =	83 (1.390)	4 (0.070)	4/230	NT	5.2%	coding (422/600 nt)	PP_2023	glutathione S‑transferase family protein
	?	NC_002947	2296172 =	67 (1.170)					coding (358/600 nt)	PP_2023	glutathione S‑transferase family protein
*	?	NC_002947	= 2301552	61 (1.020)	5 (0.090)	5/212	NT	8.5%	intergenic (‑153/‑178)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	= 2301609	54 (1.020)					intergenic (‑210/‑121)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
*	?	NC_002947	= 2303562	61 (1.020)	4 (0.070)	4/224	NT	6.3%	coding (1323/1632 nt)	PP_2027	hypothetical protein
	?	NC_002947	= 2303589	62 (1.110)					coding (1296/1632 nt)	PP_2027	hypothetical protein
*	?	NC_002947	= 2306464	66 (1.100)	4 (0.070)	4/230	NT	5.2%	coding (136/1719 nt)	PP_2028	TPR repeat‑containing protein
	?	NC_002947	= 2306542	82 (1.430)					coding (58/1719 nt)	PP_2028	TPR repeat‑containing protein
*	?	NC_002947	2314387 =	48 (0.800)	4 (0.070)	4/232	NT	8.0%	coding (781/888 nt)	PP_2036	4‑hydroxy‑tetrahydrodipicolinate synthase
	?	NC_002947	2314415 =	46 (0.790)					coding (753/888 nt)	PP_2036	4‑hydroxy‑tetrahydrodipicolinate synthase
*	?	NC_002947	= 2334317	48 (0.800)	4 (0.070)	4/226	NT	6.4%	intergenic (+21/+59)	fadA/PP_2052	3‑ketoacyl‑CoA thiolase/bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
	?	NC_002947	= 2334368	72 (1.280)					intergenic (+72/+8)	fadA/PP_2052	3‑ketoacyl‑CoA thiolase/bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
*	?	NC_002947	2337360 =	57 (0.950)	4 (0.070)	4/222	NT	6.4%	coding (745/894 nt)	ybhD	DNA‑binding transcriptional regulator
	?	NC_002947	2337417 =	64 (1.160)					coding (688/894 nt)	ybhD	DNA‑binding transcriptional regulator
*	?	NC_002947	2414780 =	40 (0.670)	5 (0.090)	5/224	NT	9.7%	intergenic (+279/‑66)	PP_2114/PP_2115	transposase/hypothetical protein
	?	NC_002947	2414873 =	56 (1.000)					coding (28/198 nt)	PP_2115	hypothetical protein
*	?	NC_002947	2422987 =	36 (0.600)	4 (0.070)	4/230	NT	9.4%	coding (1232/1248 nt)	PP_2124	glycosyl transferase
	?	NC_002947	2423036 =	43 (0.750)					coding (1183/1248 nt)	PP_2124	glycosyl transferase
*	?	NC_002947	2436654 =	82 (1.370)	4 (0.070)	4/220	NT	5.1%	intergenic (+189/‑470)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
	?	NC_002947	2436709 =	74 (1.350)					intergenic (+244/‑415)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
*	?	NC_002947	2453208 =	68 (1.140)	4 (0.070)	4/230	NT	5.8%	coding (1954/3450 nt)	mfd	transcription‑repair coupling factor
	?	NC_002947	2453246 =	64 (1.120)					coding (1916/3450 nt)	mfd	transcription‑repair coupling factor
*	?	NC_002947	2466618 =	50 (0.840)	3 (0.050)	3/238	NT	5.4%	coding (61/528 nt)	PP_2159	plastocyanin/azurin family copper‑binding protein
	?	NC_002947	2466655 =	55 (0.930)					coding (98/528 nt)	PP_2159	plastocyanin/azurin family copper‑binding protein
*	?	NC_002947	= 2473533	68 (1.140)	4 (0.070)	4/220	NT	6.2%	coding (606/1851 nt)	PP_2167	PhoD‑like phosphatase
	?	NC_002947	= 2473570	58 (1.060)					coding (569/1851 nt)	PP_2167	PhoD‑like phosphatase
*	?	NC_002947	2476606 =	61 (1.020)	5 (0.090)	5/230	NT	7.9%	coding (98/699 nt)	PP_2170	chorismate mutase family protein
	?	NC_002947	2476645 =	58 (1.010)					coding (137/699 nt)	PP_2170	chorismate mutase family protein
*	?	NC_002947	2557498 =	56 (0.940)	4 (0.070)	4/230	NT	7.0%	intergenic (‑145/‑286)	PP_2241/fepA	MFS transporter/ferric enterobactin transport system outer membrane subunit
	?	NC_002947	2557535 =	53 (0.920)					intergenic (‑182/‑249)	PP_2241/fepA	MFS transporter/ferric enterobactin transport system outer membrane subunit
*	?	NC_002947	2562122 =	64 (1.070)	6 (0.110)	6/228	NT	8.7%	coding (70/594 nt)	PP_2245	Cro/CI family transcriptional regulator
	?	NC_002947	2562148 =	65 (1.140)					coding (44/594 nt)	PP_2245	Cro/CI family transcriptional regulator
*	?	NC_002947	= 2579690	51 (0.850)	4 (0.070)	4/234	NT	7.5%	coding (1057/1095 nt)	PP_2260	glycerol‑phosphate ABC transporter ATP‑binding protein
	?	NC_002947	= 2579709	49 (0.840)					coding (1076/1095 nt)	PP_2260	glycerol‑phosphate ABC transporter ATP‑binding protein
*	?	NC_002947	2584882 =	59 (0.990)	6 (0.100)	6/230	NT	9.9%	coding (656/855 nt)	folD‑II	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
	?	NC_002947	2584964 =	53 (0.920)					coding (574/855 nt)	folD‑II	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
*	?	NC_002947	2664051 =	48 (0.800)	6 (0.130)	6/192	NT	12.7%	intergenic (+33/‑130)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase
	?	NC_002947	2664132 =	44 (0.920)					intergenic (+114/‑49)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase
*	?	NC_002947	= 2691928	67 (1.120)	4 (0.070)	4/216	NT	6.2%	coding (46/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
	?	NC_002947	= 2691938	60 (1.110)					coding (56/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
*	?	NC_002947	2720458 =	76 (1.270)	4 (0.070)	4/230	NT	5.2%	coding (152/483 nt)	PP_2380	hypothetical protein
	?	NC_002947	2720479 =	72 (1.250)					coding (173/483 nt)	PP_2380	hypothetical protein
*	?	NC_002947	2753962 =	72 (1.200)	6 (0.100)	6/232	NT	8.0%	coding (245/3147 nt)	czcA‑II	cation efflux system protein
	?	NC_002947	2753984 =	68 (1.170)					coding (267/3147 nt)	czcA‑II	cation efflux system protein
*	?	NC_002947	2774330 =	58 (0.970)	4 (0.070)	4/228	NT	6.8%	coding (1225/1353 nt)	PP_5521	hypothetical protein
	?	NC_002947	2774391 =	54 (0.950)					coding (1164/1353 nt)	PP_5521	hypothetical protein
*	?	NC_002947	2780570 =	41 (0.680)	4 (0.070)	4/232	NT	9.1%	coding (301/480 nt)	PP_2433	hypothetical protein
	?	NC_002947	2780615 =	40 (0.690)					coding (346/480 nt)	PP_2433	hypothetical protein
*	?	NC_002947	2798676 =	64 (1.070)	5 (0.090)	5/224	NT	8.3%	coding (105/693 nt)	endX	extracellular DNA endonuclease
	?	NC_002947	2798707 =	51 (0.910)					coding (74/693 nt)	endX	extracellular DNA endonuclease
*	?	NC_002947	2808573 =	60 (1.000)	6 (0.110)	6/212	NT	10.8%	noncoding (430/434 nt)	PP_mr35	cspA regulatory region
	?	NC_002947	2808606 =	46 (0.870)					noncoding (397/434 nt)	PP_mr35	cspA regulatory region
*	?	NC_002947	2813357 =	82 (1.370)	6 (0.110)	5/228	NT	7.6%	coding (499/1017 nt)	pheS	phenylalanine‑‑tRNA ligase subunit alpha
	?	NC_002947	2813386 =	67 (1.180)					coding (528/1017 nt)	pheS	phenylalanine‑‑tRNA ligase subunit alpha
*	?	NC_002947	2832716 =	59 (0.990)	5 (0.090)	5/226	NT	8.2%	intergenic (‑21/+46)	PP_2485/PP_2486	hypothetical protein/Oye family NADH‑dependent flavin oxidoreductase
	?	NC_002947	2832764 =	57 (1.010)					coding (1123/1125 nt)	PP_2486	Oye family NADH‑dependent flavin oxidoreductase
*	?	NC_002947	= 2871070	53 (0.890)	5 (0.090)	5/226	NT	9.4%	intergenic (+334/‑196)	PP_2522/PP_2524	transposase/HD domain‑containing protein
	?	NC_002947	= 2871087	47 (0.830)					intergenic (+351/‑179)	PP_2522/PP_2524	transposase/HD domain‑containing protein
*	?	NC_002947	= 2896630	50 (0.840)	5 (0.100)	5/204	NT	8.9%	intergenic (+43/‑95)	PP_2550/PP_2551	transcriptional regulator/LysR family transcriptional regulator
	?	NC_002947	= 2896673	60 (1.180)					intergenic (+86/‑52)	PP_2550/PP_2551	transcriptional regulator/LysR family transcriptional regulator
*	?	NC_002947	2926918 =	79 (1.320)	6 (0.110)	5/226	NT	7.3%	coding (142/2472 nt)	PP_2565	UvrD/REP family helicase
	?	NC_002947	2926957 =	79 (1.400)					coding (181/2472 nt)	PP_2565	UvrD/REP family helicase
*	?	NC_002947	2934858 =	60 (1.000)	3 (0.050)	3/230	NT	5.4%	coding (532/927 nt)	PP_2567	alpha/beta family hydrolase
	?	NC_002947	2934924 =	48 (0.840)					coding (598/927 nt)	PP_2567	alpha/beta family hydrolase
*	?	NC_002947	2950146 =	61 (1.020)	3 (0.050)	3/226	NT	5.6%	coding (1119/1374 nt)	oguA	8‑oxoguanine deaminase
	?	NC_002947	2950187 =	43 (0.760)					coding (1078/1374 nt)	oguA	8‑oxoguanine deaminase
*	?	NC_002947	2957115 =	68 (1.140)	11 (0.210)	10/210	NT	16.0%	intergenic (+27/‑169)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
	?	NC_002947	2957202 =	56 (1.070)					intergenic (+114/‑82)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
*	?	NC_002947	2962001 =	67 (1.120)	4 (0.070)	4/228	NT	5.7%	coding (296/1023 nt)	fatB	ferric anguibactin‑binding protein
	?	NC_002947	2962030 =	68 (1.200)					coding (267/1023 nt)	fatB	ferric anguibactin‑binding protein
*	?	NC_002947	2991869 =	NA (NA)	3 (0.050)	3/228	NT	5.6%	coding (244/516 nt)	hcpC‑I	hemolysin‑coregulated protein
	?	NC_002947	2991871 =	53 (0.890)					coding (242/516 nt)	hcpC‑I	hemolysin‑coregulated protein
*	?	NC_002947	3003037 =	54 (0.900)	6 (0.110)	6/228	NT	10.7%	coding (1035/1464 nt)	PP_2626	hypothetical protein
	?	NC_002947	3003077 =	49 (0.860)					coding (1075/1464 nt)	PP_2626	hypothetical protein
*	?	NC_002947	= 3029501	65 (1.090)	6 (0.110)	6/222	NT	9.0%	coding (1111/1653 nt)	pcaY	aromatic acid chemoreceptor
	?	NC_002947	= 3029514	61 (1.100)					coding (1124/1653 nt)	pcaY	aromatic acid chemoreceptor
*	?	NC_002947	3051144 =	52 (0.870)	3 (0.050)	3/228	NT	5.7%	coding (933/1164 nt)	PP_2663	hypothetical protein
	?	NC_002947	3051188 =	49 (0.860)					coding (977/1164 nt)	PP_2663	hypothetical protein
*	?	NC_002947	= 3102573	38 (0.630)	6 (0.110)	5/222	NT	13.6%	coding (361/642 nt)	PP_2712	hypothetical protein
	?	NC_002947	= 3102593	41 (0.740)					coding (381/642 nt)	PP_2712	hypothetical protein
*	?	NC_002947	3180485 =	58 (0.970)	4 (0.070)	4/230	NT	7.3%	coding (232/1953 nt)	PP_2790	sigma‑54 dependent sensory box protein
	?	NC_002947	3180516 =	46 (0.800)					coding (201/1953 nt)	PP_2790	sigma‑54 dependent sensory box protein
*	?	NC_002947	3206919 =	61 (1.020)	4 (0.070)	4/222	NT	6.8%	coding (525/2415 nt)	PP_2812	transporter
	?	NC_002947	3206948 =	54 (0.980)					coding (554/2415 nt)	PP_2812	transporter
*	?	NC_002947	= 3387814	60 (1.000)	4 (0.070)	4/224	NT	6.6%	coding (552/795 nt)	PP_2989	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	= 3387840	57 (1.020)					coding (578/795 nt)	PP_2989	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	3419393 =	59 (0.990)	3 (0.060)	3/216	NT	5.9%	intergenic (‑5/+103)	PP_5553/PP_3033	hypothetical protein/CI/C2 family transcriptional regulator
	?	NC_002947	3419425 =	43 (0.800)					intergenic (‑37/+71)	PP_5553/PP_3033	hypothetical protein/CI/C2 family transcriptional regulator
*	?	NC_002947	= 3431097	60 (1.000)	4 (0.070)	4/230	NT	6.5%	coding (106/348 nt)	PP_3046	hypothetical protein
	?	NC_002947	= 3431135	58 (1.010)					coding (144/348 nt)	PP_3046	hypothetical protein
*	?	NC_002947	= 3460160	53 (0.890)	6 (0.110)	6/224	NT	10.0%	coding (245/1446 nt)	PP_3075	transcriptional regulator
	?	NC_002947	= 3460174	58 (1.040)					coding (231/1446 nt)	PP_3075	transcriptional regulator
*	?	NC_002947	3478034 =	52 (0.870)	5 (0.080)	5/240	NT	7.8%	intergenic (‑26/+70)	PP_3088/PP_3089	hypothetical protein/hypothetical protein
	?	NC_002947	3478063 =	66 (1.100)					intergenic (‑55/+41)	PP_3088/PP_3089	hypothetical protein/hypothetical protein
*	?	NC_002947	= 3517062	54 (0.900)	6 (0.100)	6/238	NT	10.1%	intergenic (+1059/‑76)	PP_5576/PP_5578	hypothetical protein/hypothetical protein
	?	NC_002947	4625973 =	NA (NA)					intergenic (+4520/+44)	PP_5654/PP_4091	phosphotriesterase/transposase
*	?	NC_002947	= 3523465	NA (NA)	3 (0.050)	3/228	NT	NA	coding (135/1533 nt)	PP_3114	transposase
	?	NC_002947	= 3523493	NA (NA)					coding (163/1533 nt)	PP_3114	transposase
*	?	NC_002947	= 3559258	42 (0.700)	4 (0.070)	4/222	NT	8.4%	coding (885/942 nt)	PP_3143	LysR family transcriptional regulator
	?	NC_002947	= 3559277	48 (0.870)					coding (866/942 nt)	PP_3143	LysR family transcriptional regulator
*	?	NC_002947	= 3560251	61 (1.020)	4 (0.070)	4/230	NT	6.1%	intergenic (‑109/‑38)	PP_3143/tdcG‑III	LysR family transcriptional regulator/L‑serine dehydratase
	?	NC_002947	= 3560272	65 (1.130)					intergenic (‑130/‑17)	PP_3143/tdcG‑III	LysR family transcriptional regulator/L‑serine dehydratase
*	?	NC_002947	3563454 =	70 (1.170)	4 (0.070)	4/224	NT	5.8%	coding (413/1296 nt)	PP_3146	oxidoreductase
	?	NC_002947	3563485 =	64 (1.150)					coding (382/1296 nt)	PP_3146	oxidoreductase
*	?	NC_002947	3613318 =	75 (1.250)	4 (0.070)	4/226	NT	5.4%	coding (409/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	3613342 =	69 (1.220)					coding (385/3396 nt)	mcoA	Mn(II) copper oxidase A
*	?	NC_002947	3613484 =	70 (1.170)	4 (0.070)	4/236	NT	5.2%	coding (243/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	3613530 =	76 (1.290)					coding (197/3396 nt)	mcoA	Mn(II) copper oxidase A
*	?	NC_002947	3622255 =	59 (0.990)	4 (0.070)	4/216	NT	7.0%	intergenic (‑175/+51)	PP_3192/PP_3193	hypothetical protein/hypothetical protein
	?	NC_002947	3622301 =	54 (1.000)					intergenic (‑221/+5)	PP_3192/PP_3193	hypothetical protein/hypothetical protein
*	?	NC_002947	= 3622266	61 (1.020)	10 (0.190)	7/216	NT	15.5%	intergenic (‑186/+40)	PP_3192/PP_3193	hypothetical protein/hypothetical protein
	?	NC_002947	= 3622288	54 (1.000)					intergenic (‑208/+18)	PP_3192/PP_3193	hypothetical protein/hypothetical protein
*	?	NC_002947	3650664 =	61 (1.020)	4 (0.070)	4/230	NT	6.8%	coding (202/609 nt)	PP_3216	cysteine dioxygenase
	?	NC_002947	3650697 =	52 (0.910)					coding (169/609 nt)	PP_3216	cysteine dioxygenase
*	?	NC_002947	= 3679103	69 (1.150)	4 (0.070)	4/224	NT	5.7%	coding (59/510 nt)	PP_3243	GNAT family acetyltransferase
	?	NC_002947	= 3679116	69 (1.230)					coding (46/510 nt)	PP_3243	GNAT family acetyltransferase
*	?	NC_002947	= 3696196	52 (0.870)	3 (0.050)	3/232	NT	5.3%	coding (15/2502 nt)	ligD	DNA ligase D
	?	NC_002947	= 3696222	56 (0.970)					intergenic (‑12/‑179)	ligD/PP_3261	DNA ligase D/hypothetical protein
*	?	NC_002947	3697416 =	55 (0.920)	6 (0.110)	6/228	NT	10.1%	coding (116/417 nt)	PP_5595	hypothetical protein
	?	NC_002947	3697451 =	54 (0.950)					coding (81/417 nt)	PP_5595	hypothetical protein
*	?	NC_002947	= 3743810	65 (1.090)	5 (0.090)	5/228	NT	7.1%	coding (51/1002 nt)	paoB	aromatic aldehyde dehydrogenase FAD‑binding subunit
	?	NC_002947	= 3743823	69 (1.210)					coding (64/1002 nt)	paoB	aromatic aldehyde dehydrogenase FAD‑binding subunit
*	?	NC_002947	= 3758157	61 (1.020)	6 (0.110)	5/224	NT	8.8%	coding (427/1002 nt)	hemBB	porphobilinogen synthase
	?	NC_002947	= 3758179	67 (1.200)					coding (449/1002 nt)	hemBB	porphobilinogen synthase
*	?	NC_002947	= 3772190	58 (0.970)	4 (0.080)	4/212	NT	6.9%	intergenic (+66/‑241)	PP_3331/PP_3332	membrane protein/cytochrome c‑type protein
	?	NC_002947	= 3772202	57 (1.080)					intergenic (+78/‑229)	PP_3331/PP_3332	membrane protein/cytochrome c‑type protein
*	?	NC_002947	3793639 =	49 (0.820)	3 (0.050)	3/228	NT	6.6%	coding (927/1191 nt)	PP_3355	beta‑ketothiolase
	?	NC_002947	3793672 =	39 (0.690)					coding (894/1191 nt)	PP_3355	beta‑ketothiolase
*	?	NC_002947	= 3799420	59 (0.990)	5 (0.090)	5/230	NT	8.1%	coding (281/471 nt)	PP_3359	hydroxycinnamic acid degradation regulator
	?	NC_002947	= 3799429	57 (0.990)					coding (290/471 nt)	PP_3359	hydroxycinnamic acid degradation regulator
*	?	NC_002947	3839412 =	41 (0.680)	6 (0.110)	6/226	NT	13.4%	coding (292/1158 nt)	PP_3389	membrane protein
	?	NC_002947	3839436 =	39 (0.690)					coding (316/1158 nt)	PP_3389	membrane protein
*	?	NC_002947	= 3866633	58 (0.970)	6 (0.110)	6/226	NT	10.6%	coding (289/1020 nt)	PP_3415	LacI family transcriptional regulator
	?	NC_002947	= 3866641	47 (0.830)					coding (281/1020 nt)	PP_3415	LacI family transcriptional regulator
*	?	NC_002947	= 3928414	66 (1.100)	14 (0.260)	10/212	NT	19.1%	intergenic (+46/‑94)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein
	?	NC_002947	= 3928431	60 (1.130)					intergenic (+63/‑77)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein
*	?	NC_002947	= 3947984	35 (0.580)	3 (0.070)	3/184	NT	7.6%	coding (109/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	= 3948013	46 (1.000)					coding (80/1797 nt)	PP_3483	type II secretion system protein
*	?	NC_002947	= 3952534	65 (1.090)	4 (0.070)	3/230	NT	6.4%	coding (60/657 nt)	PP_3488	Sco1/SenC family protein
	?	NC_002947	= 3952560	54 (0.940)					coding (34/657 nt)	PP_3488	Sco1/SenC family protein
*	?	NC_002947	3969629 =	NA (NA)	3 (0.050)	3/226	NT	NA	coding (220/321 nt)	PP_3499	transposase
	?	NC_002947	3969667 =	NA (NA)					coding (258/321 nt)	PP_3499	transposase
*	?	NC_002947	= 4047836	77 (1.290)	8 (0.140)	8/224	NT	9.9%	coding (343/2418 nt)	quiA	quinate dehydrogenase
	?	NC_002947	= 4047845	73 (1.310)					coding (352/2418 nt)	quiA	quinate dehydrogenase
*	?	NC_002947	4049502 =	77 (1.290)	4 (0.070)	4/232	NT	5.3%	coding (2009/2418 nt)	quiA	quinate dehydrogenase
	?	NC_002947	4049531 =	69 (1.190)					coding (2038/2418 nt)	quiA	quinate dehydrogenase
*	?	NC_002947	4110078 =	51 (0.850)	4 (0.070)	4/226	NT	7.6%	coding (1856/2991 nt)	PP_3616	membrane protein
	?	NC_002947	4110097 =	49 (0.870)					coding (1875/2991 nt)	PP_3616	membrane protein
*	?	NC_002947	4140183 =	55 (0.920)	3 (0.050)	3/224	NT	5.2%	intergenic (+31/‑234)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein
	?	NC_002947	4140222 =	57 (1.020)					intergenic (+70/‑195)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein
*	?	NC_002947	= 4151960	57 (0.950)	6 (0.100)	7/230	NT	9.5%	intergenic (+106/+45)	PP_3655/PP_3656	cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin
	?	NC_002947	= 4152002	60 (1.050)					intergenic (+148/+3)	PP_3655/PP_3656	cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin
*	?	NC_002947	= 4159142	60 (1.000)	5 (0.100)	5/208	NT	8.8%	intergenic (+46/‑163)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	= 4159170	52 (1.000)					intergenic (+74/‑135)	PP_3661/PP_3662	membrane protein/hypothetical protein
*	?	NC_002947	4191330 =	61 (1.020)	4 (0.070)	4/230	NT	6.4%	intergenic (‑618/‑539)	PP_5612/PP_5613	hypothetical protein/hypothetical protein
	?	NC_002947	4191356 =	59 (1.030)					intergenic (‑644/‑513)	PP_5612/PP_5613	hypothetical protein/hypothetical protein
*	?	NC_002947	4238888 =	55 (0.920)	4 (0.070)	4/226	NT	7.4%	coding (460/873 nt)	catR	HTH‑type transcriptional regulator
	?	NC_002947	4238921 =	49 (0.870)					coding (493/873 nt)	catR	HTH‑type transcriptional regulator
*	?	NC_002947	4257932 =	62 (1.040)	4 (0.070)	4/236	NT	6.3%	coding (450/645 nt)	PP_3731	TetR family transcriptional regulator
	?	NC_002947	4257962 =	59 (1.000)					coding (420/645 nt)	PP_3731	TetR family transcriptional regulator
*	?	NC_002947	= 4266591	48 (0.800)	5 (0.100)	5/206	NT	9.0%	intergenic (‑89/+57)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
	?	NC_002947	= 4266628	60 (1.170)					intergenic (‑126/+20)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
*	?	NC_002947	= 4273079	63 (1.050)	4 (0.070)	4/232	NT	6.2%	intergenic (+11/+50)	PP_3743/glcC	hypothetical protein/transcriptional regulator GlcC
	?	NC_002947	= 4273116	61 (1.050)					intergenic (+48/+13)	PP_3743/glcC	hypothetical protein/transcriptional regulator GlcC
*	?	NC_002947	4282655 =	51 (0.850)	4 (0.070)	4/230	NT	7.4%	coding (619/1089 nt)	PP_3753	AraC family transcriptional regulator
	?	NC_002947	4282678 =	51 (0.890)					coding (596/1089 nt)	PP_3753	AraC family transcriptional regulator
*	?	NC_002947	4308166 =	58 (0.970)	4 (0.070)	4/230	NT	6.9%	coding (126/156 nt)	PP_3780	hypothetical protein
	?	NC_002947	4308188 =	52 (0.910)					coding (104/156 nt)	PP_3780	hypothetical protein
*	?	NC_002947	4340085 =	31 (0.520)	7 (0.160)	7/172	NT	29.7%	intergenic (+26/‑305)	ribAB‑II/PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
	?	NC_002947	4340169 =	11 (0.260)					intergenic (+110/‑221)	ribAB‑II/PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
*	?	NC_002947	4350173 =	65 (1.090)	11 (0.210)	9/206	NT	17.0%	intergenic (‑181/+56)	galU/PP_3822	UTP‑glucose‑1‑phosphate uridylyltransferase/cytochrome c family protein
	?	NC_002947	4350224 =	52 (1.010)					intergenic (‑232/+5)	galU/PP_3822	UTP‑glucose‑1‑phosphate uridylyltransferase/cytochrome c family protein
*	?	NC_002947	= 4352992	44 (0.730)	4 (0.070)	4/226	NT	8.0%	coding (74/1086 nt)	yrpB	2‑nitropropane dioxygenase
	?	NC_002947	= 4353008	51 (0.900)					coding (90/1086 nt)	yrpB	2‑nitropropane dioxygenase
*	?	NC_002947	4353694 =	47 (0.790)	3 (0.050)	3/238	NT	6.0%	coding (776/1086 nt)	yrpB	2‑nitropropane dioxygenase
	?	NC_002947	4353720 =	48 (0.810)					coding (802/1086 nt)	yrpB	2‑nitropropane dioxygenase
*	?	NC_002947	4363159 =	43 (0.720)	3 (0.050)	3/232	NT	6.3%	coding (201/1011 nt)	adhP	alcohol dehydrogenase
	?	NC_002947	4363200 =	48 (0.830)					coding (242/1011 nt)	adhP	alcohol dehydrogenase
*	?	NC_002947	4408709 =	61 (1.020)	5 (0.080)	5/236	NT	7.6%	coding (64/297 nt)	ybcO	hypothetical protein
	?	NC_002947	4408741 =	61 (1.040)					coding (32/297 nt)	ybcO	hypothetical protein
*	?	NC_002947	= 4417233	81 (1.350)	4 (0.070)	3/224	NT	5.1%	coding (82/552 nt)	PP_3905	LuxR family transcriptional regulator
	?	NC_002947	= 4417293	73 (1.310)					coding (142/552 nt)	PP_3905	LuxR family transcriptional regulator
*	?	NC_002947	4442600 =	49 (0.820)	5 (0.080)	5/238	NT	9.4%	intergenic (‑26/+112)	nicP‑II/nicT	porin‑like protein/metabolite transport protein NicT
	?	NC_002947	4442649 =	48 (0.810)					intergenic (‑75/+63)	nicP‑II/nicT	porin‑like protein/metabolite transport protein NicT
*	?	NC_002947	4540086 =	58 (0.970)	6 (0.100)	6/230	NT	10.0%	coding (243/831 nt)	nudC	NADH pyrophosphatase
	?	NC_002947	4540109 =	52 (0.910)					coding (220/831 nt)	nudC	NADH pyrophosphatase
*	?	NC_002947	= 4572333	75 (1.250)	7 (0.120)	6/228	NT	8.7%	coding (2153/2775 nt)	treY	maltooligosyl trehalose synthase
	?	NC_002947	= 4572365	75 (1.320)					coding (2185/2775 nt)	treY	maltooligosyl trehalose synthase
*	?	NC_002947	4573251 =	61 (1.020)	7 (0.150)	8/190	NT	11.1%	intergenic (+15/‑122)	PP_4054/glgX	hypothetical protein/glycogen debranching enzyme
	?	NC_002947	4573318 =	64 (1.350)					intergenic (+82/‑55)	PP_4054/glgX	hypothetical protein/glycogen debranching enzyme
*	?	NC_002947	= 4573275	69 (1.150)	4 (0.080)	4/190	NT	6.3%	intergenic (+39/‑98)	PP_4054/glgX	hypothetical protein/glycogen debranching enzyme
	?	NC_002947	= 4573292	64 (1.350)					intergenic (+56/‑81)	PP_4054/glgX	hypothetical protein/glycogen debranching enzyme
*	?	NC_002947	4582041 =	70 (1.170)	4 (0.070)	4/234	NT	5.8%	coding (1431/3321 nt)	treSB	bifunctional trehalose synthase B/maltokinase
	?	NC_002947	4582087 =	62 (1.060)					coding (1385/3321 nt)	treSB	bifunctional trehalose synthase B/maltokinase
*	?	NC_002947	= 4586100	25 (0.420)	8 (0.200)	7/164	NT	25.4%	intergenic (+139/+78)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586128	30 (0.730)					intergenic (+167/+50)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	= 4592229	69 (1.150)	4 (0.070)	4/234	NT	5.7%	coding (442/1953 nt)	mccA	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha
	?	NC_002947	= 4592284	65 (1.110)					coding (497/1953 nt)	mccA	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha
*	?	NC_002947	4708671 =	58 (0.970)	4 (0.070)	4/224	NT	6.3%	coding (498/864 nt)	PP_4165	hypothetical protein
	?	NC_002947	4708724 =	64 (1.150)					coding (445/864 nt)	PP_4165	hypothetical protein
*	?	NC_002947	4721670 =	47 (0.790)	3 (0.050)	9/222	NT	7.0%	intergenic (‑29/+35)	PP_4178/htpG	dienelactone hydrolase family protein/chaperone protein HtpG
	?	NC_002947	4721692 =	36 (0.650)					intergenic (‑51/+13)	PP_4178/htpG	dienelactone hydrolase family protein/chaperone protein HtpG
*	?	NC_002947	4726012 =	48 (0.800)	6 (0.100)	6/238	NT	10.8%	intergenic (‑134/+102)	PP_4183/brnQ	membrane protein/branched‑chain amino acid transporter
	?	NC_002947	4726044 =	51 (0.860)					intergenic (‑166/+70)	PP_4183/brnQ	membrane protein/branched‑chain amino acid transporter
*	?	NC_002947	4727770 =	72 (1.200)	7 (0.120)	6/228	NT	11.1%	intergenic (‑343/+61)	brnQ/sucD	branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha
	?	NC_002947	4727819 =	44 (0.770)					intergenic (‑392/+12)	brnQ/sucD	branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha
*	?	NC_002947	4733889 =	72 (1.200)	4 (0.070)	4/234	NT	5.5%	coding (1792/2832 nt)	sucA	2‑oxoglutarate dehydrogenase subunit E1
	?	NC_002947	4733906 =	67 (1.150)					coding (1775/2832 nt)	sucA	2‑oxoglutarate dehydrogenase subunit E1
*	?	NC_002947	= 4768108	67 (1.120)	6 (0.100)	6/234	NT	8.1%	coding (749/957 nt)	PP_4218	lipase/esterase family protein
	?	NC_002947	= 4768135	71 (1.220)					coding (722/957 nt)	PP_4218	lipase/esterase family protein
*	?	NC_002947	= 4786567	56 (0.940)	4 (0.070)	4/236	NT	6.8%	coding (792/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	= 4786597	55 (0.930)					coding (762/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	4808219 =	0 (0.000)	19 (0.450)	12/170	NT	52.8%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988991	34 (0.800)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4808224	0 (0.000)	35 (0.650)	20/216	NT	52.2%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988821 =	64 (1.190)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4856141 =	65 (1.090)	4 (0.080)	4/212	NT	6.1%	intergenic (+68/+128)	PP_4270/PP_5670	hypothetical protein/hypothetical protein
	?	NC_002947	4856228 =	66 (1.250)					intergenic (+155/+41)	PP_4270/PP_5670	hypothetical protein/hypothetical protein
*	?	NC_002947	= 4856154	65 (1.090)	7 (0.130)	5/212	NT	10.2%	intergenic (+81/+115)	PP_4270/PP_5670	hypothetical protein/hypothetical protein
	?	NC_002947	= 4856213	66 (1.250)					intergenic (+140/+56)	PP_4270/PP_5670	hypothetical protein/hypothetical protein
*	?	NC_002947	= 4861197	86 (1.440)	15 (0.320)	12/190	NT	18.2%	intergenic (‑103/+134)	ligA/PP_4275	DNA ligase/cell division protein ZipA
	?	NC_002947	= 4861238	67 (1.410)					intergenic (‑144/+93)	ligA/PP_4275	DNA ligase/cell division protein ZipA
*	?	NC_002947	4864498 =	67 (1.120)	4 (0.070)	4/232	NT	5.8%	coding (1420/3489 nt)	smc	chromosome partition protein Smc
	?	NC_002947	4864539 =	65 (1.120)					coding (1379/3489 nt)	smc	chromosome partition protein Smc
*	?	NC_002947	4889614 =	60 (1.000)	6 (0.130)	6/186	NT	11.5%	intergenic (+15/‑138)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	4889705 =	46 (0.990)					intergenic (+106/‑47)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
*	?	NC_002947	= 4890813	42 (0.700)	4 (0.070)	4/222	NT	8.9%	intergenic (+168/‑71)	glxR/ttuD	2‑hydroxy‑3‑oxopropionate reductase/hydroxypyruvate reductase
	?	NC_002947	= 4890835	43 (0.780)					intergenic (+190/‑49)	glxR/ttuD	2‑hydroxy‑3‑oxopropionate reductase/hydroxypyruvate reductase
*	?	NC_002947	4893598 =	82 (1.370)	5 (0.110)	5/186	NT	8.2%	intergenic (+28/‑180)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	4893677 =	49 (1.060)					intergenic (+107/‑101)	pyk/PP_4302	pyruvate kinase/urea transporter
*	?	NC_002947	= 4896443	38 (0.630)	11 (0.220)	10/198	NT	21.3%	intergenic (+31/‑177)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4896490	50 (1.010)					intergenic (+78/‑130)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	= 4957766	59 (0.990)	4 (0.070)	3/234	NT	6.1%	coding (979/1020 nt)	fliG	flagellar motor switch protein
	?	NC_002947	= 4957796	66 (1.130)					coding (949/1020 nt)	fliG	flagellar motor switch protein
*	?	NC_002947	4964988 =	63 (1.050)	4 (0.070)	4/230	NT	6.0%	coding (415/1476 nt)	fleQ	transcriptional regulator FleQ
	?	NC_002947	4965012 =	66 (1.150)					coding (391/1476 nt)	fleQ	transcriptional regulator FleQ
*	?	NC_002947	5079219 =	51 (0.850)	6 (0.110)	6/228	NT	10.9%	noncoding (58/77 nt)	PP_t56	tRNA‑Arg
	?	NC_002947	5079392 =	50 (0.880)					noncoding (35/77 nt)	PP_t55	tRNA‑Arg
*	?	NC_002947	= 5100019	57 (0.950)	7 (0.150)	6/190	NT	13.2%	intergenic (+57/+96)	PP_4488/phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 5100051	47 (0.990)					intergenic (+89/+64)	PP_4488/phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
*	?	NC_002947	5115683 =	53 (0.890)	5 (0.090)	5/226	NT	9.4%	coding (151/861 nt)	PP_4500	TrpH family protein
	?	NC_002947	5115709 =	47 (0.830)					coding (125/861 nt)	PP_4500	TrpH family protein
*	?	NC_002947	5159794 =	86 (1.440)	6 (0.140)	5/178	NT	9.7%	intergenic (+9/+97)	PP_4542/PP_4543	ABC transporter ATP‑binding protein/permease/hypothetical protein
	?	NC_002947	5159871 =	48 (1.080)					intergenic (+86/+20)	PP_4542/PP_4543	ABC transporter ATP‑binding protein/permease/hypothetical protein
*	?	NC_002947	= 5162643	51 (0.850)	8 (0.170)	7/188	NT	15.7%	intergenic (+118/+83)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	= 5162675	46 (0.980)					intergenic (+150/+51)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
*	?	NC_002947	5169030 =	79 (1.320)	5 (0.090)	5/230	NT	6.3%	coding (600/1365 nt)	PP_4547	glutamine synthetase
	?	NC_002947	5169066 =	72 (1.250)					coding (636/1365 nt)	PP_4547	glutamine synthetase
*	?	NC_002947	5210267 =	45 (0.750)	8 (0.150)	7/208	NT	16.7%	intergenic (‑85/+93)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
	?	NC_002947	5210358 =	41 (0.790)					intergenic (‑176/+2)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
*	?	NC_002947	5222952 =	0 (0.000)	12 (0.210) +TGAT	12/232	NT	100%	intergenic (‑315/+64)	PP_4602/PP_4603	AraC family transcriptional regulator/transposase
	?	NC_002947	5545128 =	NA (NA)					intergenic (‑220/+657)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	= 5237571	65 (1.090)	4 (0.070)	4/222	NT	6.4%	intergenic (+6/‑18)	PP_5700/PP_4614	hypothetical protein/hypothetical protein
	?	NC_002947	= 5237610	56 (1.010)					coding (22/387 nt)	PP_4614	hypothetical protein
*	?	NC_002947	= 5299053	65 (1.090)	4 (0.070)	4/230	NT	5.7%	coding (1097/2076 nt)	recD	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease
	?	NC_002947	= 5299072	71 (1.240)					coding (1078/2076 nt)	recD	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease
*	?	NC_002947	5333232 =	92 (1.540)	9 (0.160)	6/222	NT	12.2%	intergenic (+16/‑227)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
	?	NC_002947	5333314 =	45 (0.810)					intergenic (+98/‑145)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
*	?	NC_002947	= 5340968	50 (0.840)	3 (0.050)	3/226	NT	5.7%	coding (27/801 nt)	panB	3‑methyl‑2‑oxobutanoate hydroxymethyltransferase
	?	NC_002947	= 5340983	52 (0.920)					coding (42/801 nt)	panB	3‑methyl‑2‑oxobutanoate hydroxymethyltransferase
*	?	NC_002947	5346655 =	51 (0.850)	3 (0.050)	3/240	NT	6.1%	coding (29/870 nt)	PP_4703	hypothetical protein
	?	NC_002947	5346704 =	41 (0.680)					coding (78/870 nt)	PP_4703	hypothetical protein
*	?	NC_002947	5382446 =	11 (0.180)	3 (0.070)	3/170	NT	27.5%	intergenic (+18/+115)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	5382544 =	8 (0.190)					intergenic (+116/+17)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
*	?	NC_002947	= 5382480	8 (0.130)	7 (0.170)	6/170	NT	50.6%	intergenic (+52/+81)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	= 5382508	8 (0.190)					intergenic (+80/+53)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
*	?	NC_002947	5383673 =	61 (1.020)	4 (0.070)	4/226	NT	7.3%	coding (89/1671 nt)	lldP	L‑lactate permease
	?	NC_002947	5383704 =	44 (0.780)					coding (120/1671 nt)	lldP	L‑lactate permease
*	?	NC_002947	= 5395491	63 (1.050)	7 (0.120)	6/230	NT	10.9%	intergenic (+21/‑80)	hsdR/hsdM	type I restriction modification system endonuclease/type I restriction modification system methylase
	?	NC_002947	= 5395509	54 (0.940)					intergenic (+39/‑62)	hsdR/hsdM	type I restriction modification system endonuclease/type I restriction modification system methylase
*	?	NC_002947	5421204 =	60 (1.000)	4 (0.070)	4/220	NT	7.3%	intergenic (‑58/+107)	PP_4760/PP_4761	alcohol dehydrogenase/haloacid dehalogenase‑like family hydrolase
	?	NC_002947	5421286 =	47 (0.860)					intergenic (‑140/+25)	PP_4760/PP_4761	alcohol dehydrogenase/haloacid dehalogenase‑like family hydrolase
*	?	NC_002947	5460679 =	112 (1.870)	4 (0.080)	4/194	NT	5.2%	intergenic (+12/‑205)	holA/PP_4797	DNA polymerase III subunit delta/hypothetical protein
	?	NC_002947	5460783 =	56 (1.160)					intergenic (+116/‑101)	holA/PP_4797	DNA polymerase III subunit delta/hypothetical protein
*	?	NC_002947	= 5485197	49 (0.820)	6 (0.130)	7/188	NT	11.8%	intergenic (+55/‑92)	purH/purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
	?	NC_002947	= 5485219	51 (1.090)					intergenic (+77/‑70)	purH/purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
*	?	NC_002947	= 5506637	36 (0.600)	11 (0.240)	9/182	NT	24.6%	intergenic (+48/‑151)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
	?	NC_002947	= 5506650	40 (0.880)					intergenic (+61/‑138)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
*	?	NC_002947	= 5519871	89 (1.490)	7 (0.120)	7/228	NT	8.9%	intergenic (‑94/‑132)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	= 5519958	58 (1.020)					intergenic (‑181/‑45)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease
*	?	NC_002947	= 5521253	67 (1.120)	6 (0.100)	6/234	NT	8.5%	coding (581/948 nt)	lip	lipase
	?	NC_002947	= 5521274	64 (1.100)					coding (560/948 nt)	lip	lipase
*	?	NC_002947	= 5537105	69 (1.150)	8 (0.170)	7/186	NT	11.6%	intergenic (+34/+69)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
	?	NC_002947	= 5537127	69 (1.490)					intergenic (+56/+47)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
*	?	NC_002947	5542782 =	49 (0.820)	3 (0.050)	3/240	NT	5.9%	intergenic (‑36/+78)	dnaB/rplI	replicative DNA helicase/50S ribosomal protein L9
	?	NC_002947	5542816 =	47 (0.790)					intergenic (‑70/+44)	dnaB/rplI	replicative DNA helicase/50S ribosomal protein L9
*	?	NC_002947	5591042 =	40 (0.670)	5 (0.090)	5/226	NT	11.5%	coding (271/453 nt)	PP_4918	hypothetical protein
	?	NC_002947	5591062 =	39 (0.690)					coding (251/453 nt)	PP_4918	hypothetical protein
*	?	NC_002947	= 5595982	58 (0.970)	3 (0.050)	3/230	NT	5.2%	coding (148/1881 nt)	thiC	phosphomethylpyrimidine synthase
	?	NC_002947	= 5596006	54 (0.940)					coding (124/1881 nt)	thiC	phosphomethylpyrimidine synthase
*	?	NC_002947	5625659 =	61 (1.020)	4 (0.070)	4/232	NT	6.6%	coding (153/1131 nt)	PP_4943	glycosyl transferase
	?	NC_002947	5625684 =	55 (0.950)					coding (128/1131 nt)	PP_4943	glycosyl transferase
*	?	NC_002947	5653264 =	68 (1.140)	4 (0.070)	4/228	NT	5.9%	coding (99/252 nt)	PP_4962	hypothetical protein
	?	NC_002947	5653301 =	64 (1.130)					coding (62/252 nt)	PP_4962	hypothetical protein
*	?	NC_002947	= 5669462	59 (0.990)	5 (0.080)	5/238	NT	7.7%	intergenic (+12/‑113)	ahcY/metF	adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
	?	NC_002947	= 5669513	62 (1.040)					intergenic (+63/‑62)	ahcY/metF	adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
*	?	NC_002947	= 5690116	54 (0.900)	4 (0.070)	4/228	NT	7.9%	coding (283/402 nt)	pilG	pilus biosynthesis/twitching motility protein PilG
	?	NC_002947	= 5690136	42 (0.740)					coding (263/402 nt)	pilG	pilus biosynthesis/twitching motility protein PilG
*	?	NC_002947	5698783 =	41 (0.680)	11 (0.210)	10/206	NT	25.2%	intergenic (+17/‑150)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	5698866 =	30 (0.580)					intergenic (+100/‑67)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
*	?	NC_002947	= 5698799	39 (0.650)	9 (0.180)	7/206	NT	22.1%	intergenic (+33/‑134)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	= 5698848	30 (0.580)					intergenic (+82/‑85)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
*	?	NC_002947	= 5716597	65 (1.090)	4 (0.070)	4/234	NT	6.1%	coding (49/708 nt)	PP_5019	16S rRNA (uracil(1498)‑N(3))‑methyltransferase
	?	NC_002947	= 5716614	60 (1.030)					coding (66/708 nt)	PP_5019	16S rRNA (uracil(1498)‑N(3))‑methyltransferase
*	?	NC_002947	5739225 =	53 (0.890)	4 (0.070)	4/234	NT	7.4%	coding (99/1365 nt)	hutF	formiminoglutamate deiminase
	?	NC_002947	5739261 =	49 (0.840)					coding (135/1365 nt)	hutF	formiminoglutamate deiminase
*	?	NC_002947	5743392 =	58 (0.970)	6 (0.110)	5/214	NT	10.9%	intergenic (‑169/+78)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
	?	NC_002947	5743446 =	46 (0.860)					intergenic (‑223/+24)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
*	?	NC_002947	5759450 =	51 (0.850)	7 (0.120)	6/226	NT	13.2%	intergenic (+3/+153)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	5759562 =	44 (0.780)					intergenic (+115/+41)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	= 5763442	49 (0.820)	5 (0.090)	4/220	NT	9.0%	coding (762/1317 nt)	PP_5057	M23/M37 family peptidase
	?	NC_002947	= 5763463	56 (1.020)					coding (783/1317 nt)	PP_5057	M23/M37 family peptidase
*	?	NC_002947	5773906 =	72 (1.200)	6 (0.110)	6/224	NT	8.6%	coding (413/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	5773970 =	60 (1.070)					coding (477/657 nt)	betI	choline‑responsive transcriptional repressor BetI
*	?	NC_002947	= 5786551	57 (0.950)	8 (0.170)	4/192	NT	14.9%	intergenic (+38/‑93)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	= 5786588	46 (0.960)					intergenic (+75/‑56)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	= 5803276	51 (0.850)	4 (0.070)	4/230	NT	8.1%	coding (578/1017 nt)	PP_5081	type IV pili biogenesis protein
	?	NC_002947	= 5803297	42 (0.730)					coding (557/1017 nt)	PP_5081	type IV pili biogenesis protein
*	?	NC_002947	5816900 =	51 (0.850)	14 (0.250)	10/222	NT	24.7%	intergenic (+30/+99)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	5816983 =	38 (0.690)					intergenic (+113/+16)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	5828405 =	57 (0.950)	5 (0.090)	5/230	NT	8.7%	coding (503/855 nt)	rpoH	RNA polymerase factor sigma‑32
	?	NC_002947	5828441 =	50 (0.870)					coding (467/855 nt)	rpoH	RNA polymerase factor sigma‑32
*	?	NC_002947	5870317 =	40 (0.670)	5 (0.110)	4/182	NT	12.1%	intergenic (+22/+112)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	5870410 =	42 (0.930)					intergenic (+115/+19)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	= 5870345	40 (0.670)	10 (0.220)	9/182	NT	21.7%	intergenic (+50/+84)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	= 5870380	42 (0.930)					intergenic (+85/+49)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	5873252 =	48 (0.800)	4 (0.070)	4/226	NT	7.3%	intergenic (‑42/‑100)	rppH/PP_5147	RNA pyrophosphohydrolase/haloacid dehalogenase‑like family hydrolase
	?	NC_002947	5873287 =	56 (0.990)					intergenic (‑77/‑65)	rppH/PP_5147	RNA pyrophosphohydrolase/haloacid dehalogenase‑like family hydrolase
*	?	NC_002947	5877040 =	82 (1.370)	4 (0.080)	4/192	NT	6.6%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877122 =	47 (0.980)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	5893175 =	75 (1.250)	4 (0.070)	4/228	NT	5.8%	coding (151/582 nt)	PP_5167	hypothetical protein
	?	NC_002947	5893244 =	59 (1.040)					coding (82/582 nt)	PP_5167	hypothetical protein
*	?	NC_002947	= 5903825	72 (1.200)	9 (0.160)	8/220	NT	11.2%	intergenic (+25/+82)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	= 5903887	76 (1.380)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
*	?	NC_002947	5914213 =	47 (0.790)	7 (0.150)	6/184	NT	20.9%	intergenic (+49/+104)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	5914309 =	17 (0.370)					intergenic (+145/+8)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5924607	54 (0.900)	4 (0.080)	4/190	NT	7.5%	intergenic (‑121/+76)	gcvP‑II/gcvH‑II	glycine dehydrogenase/glycine cleavage system protein H
	?	NC_002947	= 5924643	56 (1.180)					intergenic (‑157/+40)	gcvP‑II/gcvH‑II	glycine dehydrogenase/glycine cleavage system protein H
*	?	NC_002947	= 5927646	65 (1.090)	4 (0.070)	4/230	NT	5.6%	coding (305/1623 nt)	PP_5195	iron ABC transporter permease
	?	NC_002947	= 5927661	73 (1.270)					coding (290/1623 nt)	PP_5195	iron ABC transporter permease
*	?	NC_002947	= 5976471	52 (0.870)	9 (0.160)	7/230	NT	14.7%	coding (216/1491 nt)	yifB	ATP‑dependent chelatase
	?	NC_002947	= 5976486	55 (0.960)					coding (231/1491 nt)	yifB	ATP‑dependent chelatase
*	?	NC_002947	= 5984491	57 (0.950)	9 (0.190)	10/194	NT	16.1%	intergenic (+31/+58)	PP_5242/ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
	?	NC_002947	= 5984511	48 (0.990)					intergenic (+51/+38)	PP_5242/ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
*	?	NC_002947	6000959 =	64 (1.070)	3 (0.070)	3/180	NT	7.1%	intergenic (+10/+99)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	6001053 =	31 (0.690)					intergenic (+104/+5)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
*	?	NC_002947	6002402 =	109 (1.820)	8 (0.150)	6/208	NT	9.4%	intergenic (‑46/+100)	amaA/amaB	L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase
	?	NC_002947	6002454 =	60 (1.160)					intergenic (‑98/+48)	amaA/amaB	L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase
*	?	NC_002947	6055974 =	65 (1.090)	4 (0.070)	4/230	NT	6.2%	coding (45/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator
	?	NC_002947	6056005 =	59 (1.030)					coding (76/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator
*	?	NC_002947	6057504 =	70 (1.170)	5 (0.090)	5/220	NT	8.5%	coding (645/2079 nt)	recG	junction‑specific ATP‑dependent DNA helicase
	?	NC_002947	6057542 =	43 (0.780)					coding (683/2079 nt)	recG	junction‑specific ATP‑dependent DNA helicase
*	?	NC_002947	6060487 =	71 (1.190)	4 (0.080)	4/212	NT	6.6%	intergenic (+67/+114)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	6060574 =	50 (0.950)					intergenic (+154/+27)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	= 6065591	49 (0.820)	4 (0.070)	5/228	NT	8.0%	coding (436/729 nt)	phoB	two‑component system DNA‑binding response regulator PhoB
	?	NC_002947	= 6065597	46 (0.810)					coding (442/729 nt)	phoB	two‑component system DNA‑binding response regulator PhoB
*	?	NC_002947	6083635 =	65 (1.090)	5 (0.090)	5/218	NT	8.6%	intergenic (‑44/+224)	purE/PP_5337	5‑(carboxyamino)imidazole ribonucleotide mutase/LysR family transcriptional regulator
	?	NC_002947	6083667 =	47 (0.860)					intergenic (‑76/+192)	purE/PP_5337	5‑(carboxyamino)imidazole ribonucleotide mutase/LysR family transcriptional regulator
*	?	NC_002947	6086779 =	62 (1.040)	4 (0.070)	4/230	NT	6.5%	coding (245/1071 nt)	oruR	ornithine utilization transcriptional regulator
	?	NC_002947	6086802 =	56 (0.980)					coding (268/1071 nt)	oruR	ornithine utilization transcriptional regulator
*	?	NC_002947	6155257 =	15 (0.250)	7 (0.120)	7/234	NT	22.7%	intergenic (‑11/+195)	PP_5398/PP_5399	transposase/hypothetical protein
	?	NC_002947	6155313 =	33 (0.570)					intergenic (‑67/+139)	PP_5398/PP_5399	transposase/hypothetical protein
*	?	NC_002947	6169258 =	69 (1.150)	6 (0.110)	6/226	NT	8.3%	coding (1093/1182 nt)	PP_5408	hypothetical protein
	?	NC_002947	6169283 =	68 (1.210)					coding (1068/1182 nt)	PP_5408	hypothetical protein
*	?	NC_002947	= 6174837	83 (1.390)	5 (0.090)	5/232	NT	6.2%	coding (396/420 nt)	atpC	ATP synthase subunit epsilon
	?	NC_002947	= 6174865	72 (1.240)					coding (368/420 nt)	atpC	ATP synthase subunit epsilon
*	?	NC_002947	= 6179890	56 (0.940)	6 (0.110)	6/228	NT	10.1%	coding (285/471 nt)	atpF	ATP synthase subunit b
	?	NC_002947	= 6179909	54 (0.950)					coding (266/471 nt)	atpF	ATP synthase subunit b