mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,647,612 | G→A | D384D (GAC→GAT) | oprB‑II ← | carbohydrate‑selective porin |
| RA | 1,851,242 | G→T | E96* (GAG→TAG) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,964,155 | Δ1 bp | coding (1248/1476 nt) | fleQ ← | transcriptional regulator FleQ |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 171373–176305 | 176305 | 1–4933 | 11 [8] | [10] 11 | PP_16SA–[PP_5SA] | PP_16SA,PP_23SA,[PP_5SA] |
| * | * | ÷ | NC_002947 | 176653–181681 | 181681 | 1–5029 | 11 [9] | [10] 12 | PP_16SB–[PP_r01] | PP_16SB,PP_23SB,[PP_r01] |
| * | * | ÷ | NC_002947 | 4808205 | 4808218 | 14 | 14 [0] | [0] 28 | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 176399 | NA (NA) | 23 (0.520) +CGAAA |
11/254 | 2.9 | 35.7% | intergenic (+43/‑420) | PP_5SA/PP_16SB | 5S ribosomal RNA/16S ribosomal RNA |
| ? | NC_002947 | = 182013 | 43 (0.930) | intergenic (+2/+63) | PP_5SB/PP_0160 | 5S ribosomal RNA/ferrioxamine receptor | |||||
| * | ? | NC_002947 | = 652785 | 36 (0.780) | 10 (0.260) | 9/224 | 2.9 | 39.6% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | = 4808204 | 0 (0.000) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | NC_002947 | 997737 = | 51 (1.110) | 12 (0.290) | 10/238 | 2.9 | 22.2% | intergenic (‑139/+93) | PP_0860/PP_0861 | sulfite reductase flavoprotein subunit/outer membrane ferric siderophore receptor |
| ? | NC_002947 | 997772 = | 38 (0.910) | intergenic (‑174/+58) | PP_0860/PP_0861 | sulfite reductase flavoprotein subunit/outer membrane ferric siderophore receptor | |||||
| * | ? | NC_002947 | = 1156352 | 24 (0.520) | 12 (0.320) | 10/214 | 2.5 | 37.8% | intergenic (+49/‑167) | PP_1013/yihS | sensor histidine kinase/aldose‑ketose isomerase |
| ? | NC_002947 | = 1156375 | 20 (0.540) | intergenic (+72/‑144) | PP_1013/yihS | sensor histidine kinase/aldose‑ketose isomerase | |||||
| * | ? | NC_002947 | 4808219 = | 0 (0.000) | 18 (0.530) | 15/194 | 1.4 | 60.0% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 5988991 | 24 (0.710) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | = 4896443 | 26 (0.560) | 21 (0.540) | 12/222 | 2.2 | 42.9% | intergenic (+31/‑177) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 4896490 | 34 (0.880) | intergenic (+78/‑130) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein | |||||
| * | ? | NC_002947 | = 5201663 | 19 (0.410) | 9 (0.270) | 9/190 | 2.4 | 37.8% | intergenic (‑101/‑79) | PP_4582/PP_4583 | membrane protein/putative Peptidase |
| ? | NC_002947 | = 5201684 | 16 (0.480) | intergenic (‑122/‑58) | PP_4582/PP_4583 | membrane protein/putative Peptidase | |||||
| * | ? | NC_002947 | = 5537105 | 40 (0.870) | 8 (0.220) | 9/210 | 2.7 | 20.3% | intergenic (+34/+69) | nadE/PP_4870 | NH(3)‑dependent NAD(+) synthetase/azurin |
| ? | NC_002947 | = 5537127 | 31 (0.850) | intergenic (+56/+47) | nadE/PP_4870 | NH(3)‑dependent NAD(+) synthetase/azurin | |||||