New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	4162863 =	48 (1.060)	4 (0.090)	4/276	6.3	7.9%	noncoding (4162863/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	4162887 =	48 (1.120)					noncoding (4162887/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCGCGTTCGGCTGGGTAAAGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGA  >  NC_000913_3_vch_tpiA/4162720‑4163007                                                                                                                                                |                                                                                                                                                 gccgcGTTCGGCTGGGTAAAGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTgcgc                                                                                                                                             <  2:489124/149‑1 (MQ=255) gccgcGTTCGGCTGGGTAAAGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTgcgc                                                                                                                                             >  1:459346/1‑149 (MQ=255)   cgcgTTCGGCTGGGTAAAGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTgcgcgc                                                                                                                                           >  2:584541/1‑149 (MQ=255)                  aaaGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCGCTGCGACCGACAGACTTGCTTTAAGGTAATCCTGATCCAGCTCGATTTTGGTTTTCATTACCCGACCAATCAGCTGCACATTGAGATTTTGCGCGCGATGTGACTCGCGCa                                                                                                                            >  2:3093/1‑149 (MQ=255)                    aGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCCGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAgg                                                                                                                          >  2:715121/1‑149 (MQ=255)                            tCTGCCGGACGGTAGATCATTTTTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTTTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGc                                                                                                                  <  2:245175/149‑1 (MQ=255)                               aCCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGAACATTCAGATTCTGCGGGCGCAGTGCATCGCGCAGGGCCTCGGCTTc                                                                                                               >  1:147727/1‑149 (MQ=255)                                 tttaccgTATATCCTCTCTTCCCCTGCGAACGGCATACGTTCATCGATGTAATCCTGATCCAGCTCGATGTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCt                                                                                                             <  2:494836/143‑1 (MQ=255)                                 cTGAGGGTAGATCATGTCTTTACCGGCGACCGGCAGAGGTTCATGGATGCAATCCTGATCCAGCTCGATTTTGGTTTTCGGTGCCCGACCAATCAGATGCACATTCGGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCt                                                                                                             <  2:46333/149‑1 (MQ=255)                                 cTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCAAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCATGGCCTCCGCTTCCt                                                                                                             >  2:770827/1‑149 (MQ=255)                                   tccgttAGATCATCTCTTTCCCTTCGACCGTCAGACGTTTCTCTATTTAATCCTGATCAAGCTCGATTTTTCTTTTCCTTGCCCGACCAATCAGATTCACATTCAGATTCTGCGCGCGCATTGCATCGCGCAGGGCCTCCGCTTCCTGa                                                                                                           <  2:193342/144‑1 (MQ=255)                                   gACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTTATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGa                                                                                                           >  1:27095/1‑149 (MQ=255)                                    aCGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGAc                                                                                                          <  1:273299/149‑1 (MQ=255)                                           atcatcTCTATCCCTGCGACCGGCAGACGTTACTCGATGTAAACCTGATACAGCTCGATATCAGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGGATCTGCGCGCGCAGTGCATCGCTCAGGACGCCCGCCTCCCGTCGCCACtc                                                                                                   >  2:457383/1‑149 (MQ=255)                                              atcTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGCCGCCGCccatc                                                                                                >  1:278324/1‑149 (MQ=255)                                              atcTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACtcatc                                                                                                >  2:154010/1‑149 (MQ=255)                                                   tttCCGTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCa                                                                                           >  2:680330/1‑149 (MQ=255)                                                       ccTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTGCGCTTCCTGACGCCACTCATCATCCAGctc                                                                                       >  1:206262/1‑148 (MQ=255)                                                        cTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGcttc                                                                                      >  1:108843/1‑149 (MQ=255)                                                           cGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATGAGATGCACATTGAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCCCTCATCTTCCGGattctgc                                                                                   >  1:119865/1‑147 (MQ=255)                                                             atcGGCAGACCTCCACCGATGCAATCCTGATCCAGCTCGATTTTGGTTTGCGTTGGCCGACCAATCAGATGCACATTCAGATTCTGCGCTCGTAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATg                                                                                 <  2:416118/147‑1 (MQ=255)                                                                       gTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAgg                                                                       >  1:492892/1‑149 (MQ=255)                                                                           aTCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACAATCAGATTCTGCGCGCGCAGTGCATCCCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGCTTcagcagtgcaa                                                                   >  2:670404/1‑144 (MQ=255)                                                                             cGATGTAATCCTGATCCAGCTCGATTTGGGTTTTCGTTGCTCGTCCAAGGAGATGCACCTTCAGATGCTGTTGGCGCGGTGCATCGGGCAGGGGGTCCGCAACCTGACGCGACTCATCATCCAGCTTCTTAGGGTATAGCTGGGAAacc                                                                 >  2:379029/1‑149 (MQ=255)                                                                              gATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAacca                                                                <  2:396787/149‑1 (MQ=255)                                                                                tGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAaccacc                                                              <  1:154010/149‑1 (MQ=255)                                                                                tGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAaccacc                                                              <  2:108843/149‑1 (MQ=255)                                                                                  tAAACCTGAACCAGCTCGAGTTTTTTTTCCGGTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTTCATCGCGCAGGGCCTCCGCTTCCCGACTCCACTCATCATCCAGCTTCTTATGGGATAGCAGGGAAACCACCGc                                                            <  2:124616/149‑1 (MQ=255)                                                                                    aTCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCt                                                          >  1:531792/1‑149 (MQ=255)                                                                                       cTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGAt                                                       <  1:584541/149‑1 (MQ=255)                                                                                         gATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTa                                                     <  1:352323/149‑1 (MQ=255)                                                                                            ccAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTc                                                  >  1:71818/1‑149 (MQ=255)                                                                                             cAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCa                                                 <  1:456919/149‑1 (MQ=255)                                                                                             cAGCTCGATTTTGGTTTCCGTTGCCCGACCAATCAGATGCACATTCAGATTCTCCGCGCGCAGTGCATCGCGCAGGCCCCCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGACTACCCa                                                 <  2:609040/149‑1 (MQ=255)                                                                                               gCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAgt                                               <  1:715121/149‑1 (MQ=255)                                                                                                     ttttGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCCGTGTAGTg                                         >  1:414542/1‑149 (MQ=255)                                                                                                       ttGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCTCAGTTCATCGCGCAGGGCCTCCGCTTCCTCACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAg                                       <  2:173324/149‑1 (MQ=255)                                                                                                        tGGTTTTCGTTGCCCGACCAATCAGATTCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCACCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAgg                                      <  2:313178/149‑1 (MQ=255)                                                                                                           ttttCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTa                                            >  2:284550/1‑140 (MQ=255)                                                                                                           ttttCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTa                                            <  1:284550/140‑1 (MQ=255)                                                                                                             ttCGTTGCCCGACCAATCAGATGCACATTCAGGTTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTgatc                                 >  1:139136/1‑149 (MQ=255)                                                                                                                gTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGATaatcaat                              >  1:383782/1‑149 (MQ=255)                                                                                                                                    cacaTTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTc                                                  <  1:669200/109‑1 (MQ=255)                                                                                                                                    cacaTTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTc                                                  >  2:669200/1‑109 (MQ=255)                                                                                                                                       aTTCAGATTCTGCGCGCGCAGTGCATCGCGCCCCCCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGaa       >  1:543324/1‑149 (MQ=255)                                                                                                                                       aTTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACATGTGGCGCAGaa       >  1:600324/1‑149 (MQ=255)                                                                                                                                         tCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACg     >  1:118216/1‑149 (MQ=255)                                                                                                                                            gATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGa  <  1:509492/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                 GCCGCGTTCGGCTGGGTAAAGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGA  >  NC_000913_3_vch_tpiA/4162720‑4163007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.