Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
3 6 15
4 5 12
2 11 27

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 459 818
Multiple Base Substitutions 10 20
Deletions 22 106
Insertions 13 41
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 504 985

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F1 I0 R1 120 0 57.9 4436370 97.6% 4329897 62.0
A3 F1 I0 R2 47 0 59.8 4603576 97.9% 4506900 61.1
A3 F3 I0 R1 42 0 47.0 3685080 97.5% 3592953 60.5
A3 F3 I0 R2 40 0 66.7 5207638 97.2% 5061824 60.8
A3 F8 I0 R1 57 0 71.7 5601774 97.7% 5472933 60.5
A3 F8 I0 R2 41 0 28.0 2221522 97.3% 2161540 59.8
A3 F17 I0 R1 56 0 60.7 4808188 97.1% 4668750 60.3
A3 F17 I0 R2 56 0 33.4 2651672 97.6% 2588031 59.9
A3 F21 I0 R1 61 0 33.6 2680365 96.0% 2573150 61.2
A3 F21 I0 R2 59 0 23.3 1840861 94.3% 1735931 61.7
A3 F28 I1 R1 0 0 0.0 489 5.5% 26 54.3
A3 F28 I1 R2 57 0 53.4 717274 8.4% 60251 54.6
A3 F28 I2 R1 60 0 60.8 348784 8.9% 31041 54.3
A3 F28 I2 R2 38 0 6089.5 1044078 7.4% 77261 54.8
A3 F28 I3 R2 56 0 7.9 54550 14.3% 7800 51.3
A4 F1 I0 R1 70 0 84.3 4123603 97.0% 3999894 62.6
A4 F1 I0 R2 5 0 11.0 518987 97.1% 503936 64.5
A4 F3 I0 R1 18 0 59.7 2976598 98.0% 2917066 60.6
A4 F3 I0 R2 8 0 43.3 2136430 96.9% 2070200 62.1
A4 F8 I0 R1 24 0 67.1 3369429 96.5% 3251498 61.7
A4 F8 I0 R2 5 0 12.5 627370 96.8% 607294 61.4
A4 F21 I0 R1 1009 0 73.8 4146436 87.4% 3623985 60.3
A4 F28 I1 R1 23 0 269.7 1142540 16.0% 182806 54.7
A4 F28 I2 R1 4 0 84.6 942431 16.1% 151731 54.9
A4 F28 I2 R2 42 0 122.2 1899532 52.7% 1001053 56.6
A4 F28 I3 R1 10 0 35.2 319432 24.6% 78580 50.8
A4 F28 I3 R2 52 0 92.4 4932871 87.1% 4296530 63.5

Mutation Needle Plot

Mutation Targets

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