mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 53,515 | G→A | P425S (CCT→TCT) | imp ← | exported protein required for envelope biosynthesis and integrity |
| RA | 161,367 | A→G | N27S (AAC→AGC) | cdaR → | DNA‑binding transcriptional regulator |
| RA | 195,592 | G→A | T79T (ACC→ACT) | yaeF ← | predicted lipoprotein |
| RA | 204,511 | C→T | intergenic (+111/‑73) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| RA | 204,556 | A→G | intergenic (+156/‑28) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| RA | 244,476 | A→G | Y316H (TAT→CAT) | sbcD ← | exonuclease, dsDNA, ATP‑dependent |
| RA | 286,334 | C→T | T147I (ACA→ATA) | clpX → | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease |
| RA | 298,431 | G→A | M364I (ATG→ATA) | mdlA → | fused predicted multidrug transporter subunits and ATP‑binding components of ABC superfamily |
| RA | 458,679 | G→A | G73S (GGC→AGC) | nei → | endonuclease VIII |
| RA | 505,424 | T→C | G128G (GGT→GGC) | ybhE → | 6‑phosphogluconolactonase |
| RA | 518,289 | G→A | D105N (GAT→AAT) | bioC → | predicted methltransferase, enzyme of biotin synthesis |
| RA | 558,552 | G→A | intergenic (+102/‑202) | iaaA → / → cmr | L‑asparaginase/multidrug efflux system protein |
| RA | 788,731 | T→C | N242S (AAC→AGC) | ycgB ← | conserved hypothetical protein |
| RA | 793,951 | G→A | A112V (GCG→GTG) | cvrA ← | predicted cation/proton antiporter |
| RA | 848,817 | Δ1 bp | coding (407/1254 nt) | kch ← | voltage‑gated potassium channel |
| RA | 962,083 | A→G | Y214H (TAT→CAT) | yddB ← | predicted porin protein |
| RA | 967,816 | G→T | A190D (GCT→GAT) | ydeV ← | predicted sugar kinase |
| RA | 1,036,505 | G→A | A632A (GCG→GCA) | rsxC → | fused predicted 4Fe‑4S ferredoxin‑type protein |
| RA | 1,069,493 | G→A | M130I (ATG→ATA) | cfa → | cyclopropane fatty acyl phospholipid synthase |
| RA | 1,109,347 | C→T | L88F (CTC→TTC) | ydiS → | predicted oxidoreductase, FAD/NAD(P)‑binding domain |
| RA | 1,358,189 | G→T | S311R (AGC→AGA) | yehB ← | predicted outer membrane protein |
| RA | 1,391,735 | T→C | K370E (AAA→GAA) | fruA ← | fused fructose‑specific PTS enzyme IIB'BC components |
| RA | 1,416,539 | T→C | V244V (GTT→GTC) | yejM → | predicted hydrolase, inner membrane |
| RA | 1,419,579 | G→A | R128R (CGC→CGT) | ccmH ← | heme lyase, CcmH subunit |
| RA | 1,456,196 | G→A | A385V (GCG→GTG) | yfaQ ← | hypothetical protein |
| RA | 1,530,607 | G→A | T69I (ACT→ATT) | yfcA ← | conserved inner membrane protein |
| RA | 1,568,107 | C→T | G407R (GGG→AGG) | mntH ← | manganese/divalent cation transporter |
| RA | 1,582,992 | T→C | S81S (TCA→TCG) | ligA ← | DNA ligase, NAD(+)‑dependent |
| RA | 1,590,722 | (T)6→5 | coding (323/375 nt) | yfeK → | hypothetical protein |
| RA | 1,634,087 | C→T | L75L (CTC→CTT) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 1,657,320 | A→G | S531G (AGT→GGT) | ppk → | polyphosphate kinase, component of RNA degradosome |
| RA | 1,670,644 | A→G | I232T (ATT→ACT) | yfgL ← | protein assembly complex, lipoprotein component |
| RA | 1,695,634 | G→A | Q126* (CAG→TAG) | yfhQ ← | predicted methyltransferase |
| RA | 1,833,578 | T→C | L107L (CTT→CTC) | ygbL → | predicted class II aldolase |
| RA | 1,889,046 | G→A | P395S (CCC→TCC) | gudX ← | predicted glucarate dehydratase |
| RA | 1,892,019 | +GC | intergenic (‑437/+54) | gudP ← / ← ygdL | predicted D‑glucarate transporter/conserved hypothetical protein |
| RA | 1,919,248 | G→A | Q205Q (CAG→CAA) | tas → | predicted oxidoreductase, NADP(H)‑dependent aldo‑keto reductase |
| RA | 1,924,650 | C→T | H339Y (CAT→TAT) | galR → | DNA‑binding transcriptional repressor |
| RA | 1,948,347 | C→A | intergenic (‑38/+81) | gcvP ← / ← gcvH | glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex/glycine cleavage complex lipoylprotein |
| RA | 2,023,066 | G→A | P281S (CCA→TCA) | ygiQ ← | conserved hypothetical protein |
| RA | 2,039,506 | C→T | V137I (GTT→ATT) | ribB ← | 3,4 dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 2,042,482 | C→T | M57I (ATG→ATA) | glgS ← | predicted glycogen synthesis protein |
| RA | 2,062,561 | C→T | L248F (CTT→TTT) | dnaG → | DNA primase |
| RA | 2,072,048 | A→T | intergenic (‑88/‑131) | ygjH ← / → ebgR | conserved hypothetical protein/DNA‑binding transcriptional repressor |
| RA | 2,073,779 | G→A | G145D (GGT→GAT) | ebgA → | cryptic beta‑D‑galactosidase, alpha subunit |
| RA | 2,366,284 | A→G | I390T (ATC→ACC) | pepQ ← | proline dipeptidase |
| RA | 2,379,816 | C→T | intergenic (‑58/+37) | ubiE ← / ← rmuC | bifunctional 2‑octaprenyl‑6‑methoxy‑1,4‑benzoquinone methylase and S‑adenosylmethionine:2‑DMK methyltransferase/predicted recombination limiting protein |
| RA | 2,402,822 | T→C | E70G (GAG→GGG) | yigA ← | conserved hypothetical protein |
| RA | 2,421,748 | T→C | K196K (AAA→AAG) | wzxE ← | O‑antigen translocase |
| RA | 2,493,363 | G→A | E720E (GAG→GAA) | gyrB → | DNA gyrase, subunit B |
| RA | 2,748,276 | A→G | S117G (AGC→GGC) | secY → | preprotein translocase membrane subunit |
| RA | 2,952,505 | (G)8→9 | noncoding (72/87 nt) | leuP ← | tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | minE | 252003 | 252024 | 22 | 25 [7] | [3] 14 | malZ | maltodextrin glucosidase |
| * | * | ÷ | minE | 1616730 | 1616753 | 24 | 17 [4] | [2] 17 | eutE | predicted aldehyde dehydrogenase, ethanolamine utilization protein |