| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 3,844,127 | C→T | intergenic (+345/‑1) | RPPX_17120 → / → RPPX_17125 | glutamyl‑tRNA synthetase/tRNA‑Ala |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 3,844,127 | 0 | C | T | 99.1% | 848.0 / ‑5.4 | 232 | intergenic (+345/‑1) | RPPX_17120/RPPX_17125 | glutamyl‑tRNA synthetase/tRNA‑Ala |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base T (111/118); total (112/120) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
Only 100 of 246 total aligned reads displayed.
GATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCC > CP009974/3843979‑3844277 | gATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTgg > 1:5158636/1‑151 (MQ=255)gATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTgg > 1:4349328/1‑151 (MQ=255) aTTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTggg > 2:4302421/1‑151 (MQ=255) tGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGc < 1:4859780/151‑1 (MQ=255) ttATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCta > 1:3443829/1‑151 (MQ=255) aTCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCtata > 1:4382256/1‑151 (MQ=255) aTCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCtata < 1:736480/151‑1 (MQ=255) aTCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCtata > 1:3751653/1‑151 (MQ=255) aTCTGTGAAAAAATTTTTGAATATTTTTAGAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCtata > 2:3083346/1‑151 (MQ=255) tCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAg > 1:4582853/1‑151 (MQ=255) cTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGc < 1:4738569/151‑1 (MQ=255) cTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGc > 1:3317772/1‑151 (MQ=255) cTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGc < 1:526486/151‑1 (MQ=255) cTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGc < 2:4437572/151‑1 (MQ=255) tgtgAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCt < 1:543888/151‑1 (MQ=255) tgAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCa > 2:3353179/1‑151 (MQ=255) aaaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTg > 1:2064822/1‑151 (MQ=255) aaaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTg < 2:117976/151‑1 (MQ=255) aTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGAGGGGCTATAGCTCAGCTGGga > 1:1073631/1‑151 (MQ=255) tttttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGgag < 2:3887610/151‑1 (MQ=255) ttttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGgaga < 1:2732715/151‑1 (MQ=255) tttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGagag > 2:5227716/1‑151 (MQ=255) tttGAATATGTTTGAAAATGAGTTTGACAGCCCTGCAATCCGATCTTAATACGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGagag < 2:3452345/151‑1 (MQ=255) ttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAgc > 1:4489805/1‑151 (MQ=255) tGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAgcg < 2:3373266/151‑1 (MQ=255) tGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAgcg > 1:5201006/1‑151 (MQ=255) tatTTTTTTAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACATCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGTCTATAGCTCAGCTGGGAGAGCGCCTg > 2:1212110/1‑151 (MQ=255) tttttGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgca < 1:1815688/151‑1 (MQ=255) tttttGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgca < 2:2715739/151‑1 (MQ=255) tttttGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgca > 1:1911556/1‑151 (MQ=255) tttGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatg > 1:869734/1‑151 (MQ=255) tttGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatg > 1:4028475/1‑151 (MQ=255) gAAAGTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggca < 2:1282941/151‑1 (MQ=255) aaaaTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggcat < 1:4237783/151‑1 (MQ=255) aaaTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggcatg > 1:515138/1‑151 (MQ=255) gaTTAGTTACACAGCCCTGCAATCCGATCTACATATGCGCCCGGTCCACAGCGATGAACGGAAACGAAGCGCCAGGCACCTAGCCAGCGATTCAGTTCAAAGCAACATTGCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGc < 2:1860901/150‑1 (MQ=255) aaTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGc > 2:5117259/1‑151 (MQ=255) aaTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGc > 2:1136603/1‑151 (MQ=255) aTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCa > 1:688519/1‑151 (MQ=255) aGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCagga > 1:3292640/1‑151 (MQ=255) gACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCagg > 1:830573/1‑145 (MQ=255) gACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCagg < 2:830573/145‑1 (MQ=255) gACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCa < 2:916838/151‑1 (MQ=255) gACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCa < 1:466967/151‑1 (MQ=255) ccTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGtt > 1:4484657/1‑151 (MQ=255) cTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTc > 1:958085/1‑151 (MQ=255) cTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGAGTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGATCGCCTGCATGGCATGCAGGAGGTCAGCGGTTc > 1:1681512/1‑151 (MQ=255) tGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCg > 1:4243599/1‑151 (MQ=255) tGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCg < 1:4069114/151‑1 (MQ=255) aTCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATcc < 1:2501000/151‑1 (MQ=255) tCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCg > 2:2369647/1‑141 (MQ=255) tCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATccc > 1:5091948/1‑151 (MQ=255) tCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATcac < 2:4582903/151‑3 (MQ=255) ttAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGc < 2:2175951/151‑1 (MQ=255) tAATATGCGCCCCGTCCACAGCGATGAACGAAACCGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGACTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTCGCt > 1:3667655/1‑151 (MQ=255) atGCGCCCCATCTACAGCGATGAACGAAAACGAATTGCAAGGCACCCAGCCAGCGATTCAGTTCAAAGATACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTccac < 2:1607241/151‑1 (MQ=37) tGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTccacc > 2:20729/1‑151 (MQ=255) gcgcCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTccacca < 1:3353179/151‑1 (MQ=255) cccGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAtttc < 1:1129534/151‑2 (MQ=255) cgcccACAGCGATGAACAGAAACGAAGAGGCAGGCTCCTTACGAGCGAGGCAGTTCAAAGTTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTg < 2:1007516/148‑1 (MQ=21) cGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattcc > 1:3420157‑M1/1‑146 (MQ=255) tCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGcc > 2:3784451/1‑151 (MQ=255) ccACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcc > 1:4679088‑M1/1‑143 (MQ=255) aGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagc < 1:1463342‑M1/151‑13 (MQ=255) gCGATGAACGAAAACGGAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagca < 2:3067388‑M1/151‑14 (MQ=255) aacgaaaacacaGCGGCGAGGACCCAGTGAGCGAGTCAGGCGAGGGCAAAATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGtt < 2:4690352/151‑1 (MQ=18) cgaaaacgatGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCagg < 2:5020166/96‑1 (MQ=255) cgaaaacgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCagg > 1:5020166/1‑96 (MQ=255) cgaaaacgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttggcagccaaggc < 1:1786871‑M1/151‑22 (MQ=255) aaaacgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctg > 1:212280‑M1/1‑128 (MQ=255) ggaaGCGGCGGGGGCCGAGCGAGGGATGGAGGTCAGAGCGACAGTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATc < 2:4385939/150‑1 (MQ=21) cgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataa < 1:3923889‑M1/151‑28 (MQ=255) cgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATc < 2:28471/151‑1 (MQ=255) gcgacgagCAGCCAGCCAGGGATGCAGGTCAAAGCAACAATGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCa < 2:4174710/144‑1 (MQ=25) ccAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagat < 2:570308‑M1/151‑35 (MQ=255) cAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAATTTCCCGCGGCTCGCGTTAG‑AGATCGGCagagcg > 2:31220/1‑146 (MQ=25) cACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggt > 1:4445520‑M1/1‑112 (MQ=255) cccAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccccgtggctcccaagagcgataagcaagatcgggtcc > 1:4575098‑M1/1‑110 (MQ=255) agccagcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagc > 1:3049790‑M1/1‑107 (MQ=255) gcgagcgatTCAGTTCAAGGCTAGGTTGTGGGGCTAGAGGTCAGCGGGGCGCGCGCCTGCGTGGCAGGCAGGGGGTCGGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagca < 2:4069608‑M1/148‑46 (MQ=255) cagcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTcccc < 2:515152/151‑1 (MQ=255) agcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaatgctgataagcaagatcgggtccagcacac > 1:2297583‑M1/1‑103 (MQ=255) gcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCtt > 1:3975781/1‑151 (MQ=255) aTTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggt < 2:2267648‑M1/151‑53 (MQ=255) tCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtct > 2:3284913‑M1/1‑97 (MQ=255) aGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccacggccgatccgccagctcgggtccagccaccccgtctag > 2:5168683‑M1/1‑95 (MQ=255) tCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgctcagcagccaatgctggtacgcaagatcgggtccagcaaaccggtcttgtag > 2:4538983‑M1/1‑92 (MQ=255) cAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtcttgaagg < 1:1383296‑M1/151‑61 (MQ=255) gCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtcttgaaggtaag < 1:2584789‑M1/151‑65 (MQ=255) tttgtttcGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGGTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGa > 1:3493648/8‑151 (MQ=18) tACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggcat > 1:1574105/1‑46 (MQ=255) tACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAatttcgcttagcagccaaggctgatacgccagatcgggtccagcacaccggtcttgaaggtaagca > 2:4356934‑M1/1‑85 (MQ=255) tACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgctcagcagccaaggctgatacgcaagatcgggtccagcaacccggtcttgaaggtaagaa > 1:235515‑M1/1‑85 (MQ=255) tACATTGCGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggcat < 2:1574105/46‑1 (MQ=255) ttgtttcGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGac > 2:3971945/7‑151 (MQ=18) aTTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTc > 1:3203601/1‑61 (MQ=255) aTTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTc < 2:3203601/61‑1 (MQ=255) aTTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTccacca < 1:305747/81‑1 (MQ=255) aTTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtcttgaaggtaagaaggt > 1:1157067‑M1/1‑82 (MQ=255) cGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGcc > 1:2030255/1‑151 (MQ=21) | GATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCC > CP009974/3843979‑3844277 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |