| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB122 | 5,086,579 | 0 | A | C | 52.9% | 2.7 / 11.9 | 17 | intergenic (‑307/+30) | aruC/cdhR_7 | Succinylornithine transaminase/acetylornithine aminotransferase/HTH‑type transcriptional regulator CdhR |
| Reads supporting (aligned to +/- strand): ref base A (5/3); new base C (9/0); total (14/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.24e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.20e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGGGGCTGGGTGAACGGGTGCTCACACAGGATTGTGAGGGGGCAGGATGTACGGCGATGTTGATGTGTTGACGGGGAGATCGAGCGCCGCGTGGGCGGCGCTCGATTTGCGCCCCAACACCAACCCCAAGGCATACACCCCGAACCCACCCGAAATCTCAGCCCTTTTCAGCCGGCGCCGAGCTCAATTCAAACGGGCTGCTGCTGCGACGCTGATTGCGGTCTTCCCGCGGCGTTGCACCAAAGA > ACB122/5086452‑5086697 | gggggCTGGGTGAACGGGTGCTCACACAGGATTGTGAGGGGGCAGGATGTACGGCGATGTTGATGTGTTGACGGGGAGATCGAGCGCCGCGTGGGCGGCGCGGGCTTTGGGGCCCCACCCCAACCCCCAGGCCTac > 7:210562/1‑136 (MQ=255)gggggCTGGGTGAACGGGTGCTCACACAGGATTGTGAGGGGGCAGGATGTACGGCGATGTTGATGTGTTGACGGGGAGATCGAGCGCCGCGTGGGCGGCGCGCGATTTGCGCCCCCACCCCAACCCCAAGGCCTac > 7:161959/1‑136 (MQ=255) gggCTGGGTGAACGGGTGCTCACACAGGATTGTGAGGGGGCAGGATGTACGGCGATGTTGATGTGTTGACGGGGAGATCGAGCGCCGCGTGGGCGGCGCTCGATTTGCGCCCCAACACCAACCCCCAGGCATacac > 1:54714/1‑136 (MQ=255) gggCTGGGTGAACGGGTGCTCACACAGGATTGTGAGGGGGCAGGATGTACGGCGATGTTGATGTGTTGACGGGGAGATCGAGAGCCGCCTGGGCGGCGCTCGTTTTGCGCCCCAACACCAACCCCAACGCAAaccc > 1:90168/1‑134 (MQ=255) gggTGAACGGGTGCTCACACAGGATTGTGAGGGGGCAGGATGTACGGCGATGTTGATGTGTTGACGGGGAGATCGCGCGCCGCGGGGGGGGCGCGGGTTTTGCGGCCCCACCCCACCCCCCAGGCCTACACCCCgc > 1:220923/1‑135 (MQ=255) gggTGAACGGGTGCTCACACAGGATTGTGAGGGGGCAGGATGTACGGCGATGTTGATGTGTTGACGGGGAGATCGAGCGCCGCGGGGGCCGCGCGCGATTTGCGCCCCCACCCCCACCCCCACGCCTACCCCCCgc > 3:199543/1‑135 (MQ=255) aTTGTGAGGGGGCAGGATGTACGGCGATGTTGATGTGTTGACGGGGAGATCGACCGCCGCGTGGGCGGCGCGCGATTTTCGCCCCCACACCAACCCCAATGCCTAGCACCCGCACCCCCCCGAAAACACAGcccct > 1:8526/1‑134 (MQ=255) gAGGGGGCAGGATGTACGGCGATGTTGATGTGTTGACGGGGAGATCGCGCGCCGCGTGGGCGGCGCTCGCTTTGCGCCCCACCCCCCACCCCCAGGCATACACCCCGCACCCCCCCGCAATCTGAGcccggttga > 5:65369/1‑129 (MQ=255) cAGGATGTACGGCGATGTTGATGTGTTGACGGGGAGATCGAGCGCCGCGTGGGCGGCGCTCGGTTTTCGCCCCCACCCCAACCCCCAGGCATGCACCCCCCCCCCCCCCGCAATCTCAGCCCGTTTCAGGCGgcgc > 7:181804/1‑136 (MQ=255) cAGGATGTACGGCGATGTTGATGTGTTGACGGGGAGATCGAGCGCCGCGTGGGCGGCGCTCGATTTGCGCCCCAACACCAACCCCCAGGCCTACACCCCCCACCCCCCCGCAATCTCACCCCGTTTAAGCCGgcg > 6:190317/1‑135 (MQ=255) cAGGATGTACGGCGATGTTGATGTGTTGACGGGGAGATCGAGCGCCCCGTGGGCGGCGGTCGCTTTTCGCCCCACCCCCCCCCCCCAGGCCTTCCCCCCCCCCCCCCCCGCAATCTCACCCCGTTTGCGCCCgcgc > 7:18347/1‑136 (MQ=255) cGATGTTGATGTGTTGACGGGGAGATCGAGCGCCGCGTGGGCGGCGCGCGATTTGCGCCCCACCCCCCACCCCCACGCATACCCCCCGCCCCCCCCCGCAATCGCAGCCCGTTTAAGCCGGCGCCGGGCTCAAtt > 7:196076/1‑135 (MQ=255) aTGTTGAGGTGTTGCGGGGGAGCTCGCGCGCCGGGTGGGCGGCGCTCGATTTGCGCCCCAACACCAACCCCAAGGCATACACCCCGAACCCACCCGAAATCTCAGCCCTTTTCAGCCGGCGCCGAGCTCAATTCaa < 8:189667/136‑1 (MQ=255) ttgtggtgtGGACGGGGCGATCGCGCGCCGCGGGGGCGGCGCTCGATTTGCGCCCCAACACCAACCCCAAGGCATACACCCCGAACCCACCCGAAATCTCAGCCCTTTTCAGCCGGCGCCGAGCTCAATTCAAACg < 2:54714/131‑1 (MQ=255) cgcCCCAACACCAACCCCAAGGCATACACCCCGAACCCACCCGAAATCTCAGCCCTTTTCAGCCGGCGCCGAGCTCAATTCAAACGGGCTGCTGCTGCGACGCTGATTGCGGTCTTCCCGCGGCGTTGCACCAAAg < 8:207741/136‑1 (MQ=255) ccccAACACCAACCCCAAGGCATACACCCCGAACCCACCCGAAATCTCAGCCCTTTTCAGCCGGCGCCGAGCTCAATTCAAACGGGCTGCTGCTGCGACGCTGATTGCGGTCTTCCCGCGGCGTTGCACCAAAGa > 3:61293/1‑135 (MQ=255) ccccAACACCAACCCCAAGGCATACACCCCGAACCCACCCGAAATCTCAGCCCTTTTCAGCCGGCGCCGAGCTCAATTCAAACGGGCTGCTGCTGCGACGCTGATTGCGGTCTTCCCGCGGCGTTGCACCAAAGa > 3:102536/1‑135 (MQ=255) | GGGGGCTGGGTGAACGGGTGCTCACACAGGATTGTGAGGGGGCAGGATGTACGGCGATGTTGATGTGTTGACGGGGAGATCGAGCGCCGCGTGGGCGGCGCTCGATTTGCGCCCCAACACCAACCCCAAGGCATACACCCCGAACCCACCCGAAATCTCAGCCCTTTTCAGCCGGCGCCGAGCTCAATTCAAACGGGCTGCTGCTGCGACGCTGATTGCGGTCTTCCCGCGGCGTTGCACCAAAGA > ACB122/5086452‑5086697 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |