Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | ACB122 | 172,862 | A→G | 5.9% | L783P (CTC→CCC) | fhuA_1 ← | Ferrichrome outer membrane transporter/phagereceptor |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB122 | 172,862 | 0 | A | G | 5.9% | 219.8 / 2.0 | 68 | L783P (CTC→CCC) | fhuA_1 | Ferrichrome outer membrane transporter/phagereceptor |
Reads supporting (aligned to +/- strand): ref base A (22/41); new base G (2/2); total (25/43) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.14e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCGACCCAGCTGTACCCCACATATCGCACCCCACCGCCCAGCCGCAGGCCATCCAGTGC > ACB122/172728‑172992 | aCTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGa > 3:103238/1‑135 (MQ=255) tAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCtt < 4:116933/134‑1 (MQ=255) tAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCtt < 4:125307/134‑1 (MQ=255) tAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCtt < 5:182528/134‑1 (MQ=255) tAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCtt < 6:218816/134‑1 (MQ=255) tAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCtt < 6:251553/134‑1 (MQ=255) tAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCtt < 6:316380/134‑1 (MQ=255) gCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCtt < 8:209806/132‑1 (MQ=255) gCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCtt > 7:209806/1‑132 (MQ=255) gCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGcc > 1:163932/1‑135 (MQ=255) gCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGc > 7:73622/1‑134 (MQ=255) gcgcTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAg > 1:299705/1‑135 (MQ=255) gcTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGGGCTTGCCCAGGTCATAGc > 1:151847/1‑134 (MQ=255) gcTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGGGCTTGCCCAGGTCATAGc > 1:147113/1‑134 (MQ=255) tCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGTCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGa > 6:321394/1‑135 (MQ=255) caTTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATc < 2:56822/134‑1 (MQ=255) ctctTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTc < 8:314608/135‑1 (MQ=255) ctctTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTc < 8:5783/135‑1 (MQ=255) tCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGa < 2:158462/133‑1 (MQ=255) tCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGa < 1:87281/133‑1 (MQ=255) tCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGa < 1:5618/133‑1 (MQ=255) tCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGa < 2:3388/133‑1 (MQ=255) tCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGa < 2:65999/133‑1 (MQ=255) tCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGa < 4:124975/133‑1 (MQ=255) aCCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACa < 2:163932/134‑1 (MQ=255) ccATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAggg < 8:94942/135‑1 (MQ=255) aGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAg > 8:320036/1‑134 (MQ=255) cAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGaa > 2:88895/1‑135 (MQ=255) cAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGaa > 8:313233/1‑135 (MQ=255) agtagtTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGGGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAg < 2:147113/135‑1 (MQ=255) agtagtTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGGGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAg < 2:151847/135‑1 (MQ=255) cAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCt > 2:95575/1‑134 (MQ=255) aTGAGGTGATGTAGCATACATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGCCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGCAAGCCACATACATGCtcattt > 4:348086/1‑130 (MQ=255) ggTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCg < 7:320036/134‑1 (MQ=255) ggTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCg < 1:88895/134‑1 (MQ=255) tGATGTAGCTTTCATTGGTCAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCAt < 6:87988/135‑1 (MQ=255) tGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATACACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCAt < 7:59905/135‑1 (MQ=255) aTGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCg < 8:213424/135‑1 (MQ=255) tGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCtt > 3:48031/1‑64 (MQ=255) tGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCtt < 4:48031/64‑1 (MQ=255) tGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCg < 7:361287/134‑1 (MQ=255) tGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCg < 1:95575/134‑1 (MQ=255) tGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCg < 1:17321/134‑1 (MQ=255) aGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCGAcc < 2:268486/134‑1 (MQ=255) ttGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCGACCCAGCTGTAc < 7:313233/135‑1 (MQ=255) tGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGCGCTTGCCCAGGACATAGCCGATCGAGGCGTCGAACAGGGGGTATGCACGCACCTTCCTGCTGTTTTCCCCATCGACCCAGCTCTaac > 2:195226/1‑133 (MQ=255) tGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCGACCCAGCTGTAcc > 7:191817/1‑135 (MQ=255) tGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTACGCATCGACCCAGCTGTAcc > 5:212730/1‑135 (MQ=255) gttgttGGCGCTCAAGCGCACATCCACACCCCTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCGACCCAGCTGTACCCCACata < 7:99551/135‑1 (MQ=255) aaGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAg < 8:319787/54‑1 (MQ=255) aaGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAg > 7:319787/1‑54 (MQ=255) aaGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCGACCCAGCTGTACCCCACATATCGCACCCCAcc < 8:191817/134‑1 (MQ=255) aaGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCGACCCAGCTGTACCCCACATATCGCACCCCAcc < 3:114550/134‑1 (MQ=255) aaGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCGACCCAGCTGTACCCCACATATCGCACCCCACCg > 4:105805/1‑135 (MQ=255) aaGCGCACATCCACACCCGGCAGGCCGAGCTTGCCCAGGTCATAGCCGTTCGAGGCGTCGAACAGGGTGGAGGAAGGCACCTTCATGCTGTTTTCCGCATCGACCCAGCTGTACCCCACATATCGCACCCCAcc < 7:106148/134‑1 (MQ=255) gcACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCGACCCAGCTGTACCCCACATATCGCACCCCACCGCCCa < 2:299705/135‑1 (MQ=255) cacaCCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAg > 7:192156/1‑43 (MQ=255) cacaCCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAg < 8:192156/43‑1 (MQ=255) acacCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCGACCCAGCTGTACCCCACATATCGCACCCCACCGCCCAGCCGCAgg < 3:173875/135‑1 (MQ=255) cGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCGACCCAGCTGTCCCCCACATATCGCACCCCACCGCCCAGCCGCAGGCCCTc > 5:318294/1‑135 (MQ=255) tCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCg > 4:221208/1‑83 (MQ=255) tCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCg < 3:221208/83‑1 (MQ=255) aGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTc > 6:5472/1‑63 (MQ=255) aGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTc < 5:5472/63‑1 (MQ=255) aGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCGACCCAGCTGTACCCCACATATCGCACCCCACCGCCCAGCCGCAGGCCATCCAGt > 2:121935/1‑135 (MQ=255) ggCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCGACCCAGCTGTACCCCACATATCGCACCCCACCGCCCAGCCGCAGGCCATCCAGTg < 3:248193/135‑1 (MQ=255) gCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTc > 2:246537/1‑36 (MQ=255) gCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTc < 1:246537/36‑1 (MQ=255) gCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTATCCGCATCGACCCAGCTGTACCCCACATATCGCACCCCACCCCCAAGCCGCACGCCATCCAGTGc > 7:64612/1‑135 (MQ=255) | ACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGTTGGCGTTCAAGCGCACATCCACACCCGTCAGGCCGAGCTTGCCCAGGTCATAGCCGATCGAGGCGTCGAACAGGGTGTAGGAAGGCACCTTCATGCTGTTTTCCGCATCGACCCAGCTGTACCCCACATATCGCACCCCACCGCCCAGCCGCAGGCCATCCAGTGC > ACB122/172728‑172992 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |