Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | ACB122 | 2,827,559 | C→A | 6.3% | V302F (GTT→TTT) | aldA_2 ← | Putative aldehyde dehydrogenase AldA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB122 | 2,827,559 | 0 | C | A | 6.3% | 198.2 / 3.8 | 64 | V302F (GTT→TTT) | aldA_2 | Putative aldehyde dehydrogenase AldA |
Reads supporting (aligned to +/- strand): ref base C (28/32); new base A (2/2); total (30/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.77e-01 |
AGGATCCGTTCCATCTGGGTCTTGCTGACCTGTGCGCCCATCATGGTGTCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTGCCGCCCAGTTCAAGGG > ACB122/2827426‑2827690 | aGGATCCGTTCCATCTGGGTCTTGCTGACCTGTGCGCCCATCATGGTGTCCGGGTTCAATGGGTCACACACACGCACAGCTTCGACCTTATGCTTGAGCTCAGCCAGGCATCCCTCGTAGATGGATTCGTgaac > 2:161084/1‑134 (MQ=255) aTCCGTTCCATCTGGGTCTTGCTGACCTGTGCGCCCATCATGGTGTCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTgaacga > 2:114800/1‑133 (MQ=255) cATCTGGGTCTTGCTGACCTGTGCGCCCATCATGGTGTCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAg < 7:186277/134‑1 (MQ=255) gggTCTTGCTGACCTGTGCGCCCATCATGGTGTCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCgg > 8:70167/1‑135 (MQ=255) ttGCTGACCTGTGCGCCCATCATGGTGTCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCg > 3:240874/1‑135 (MQ=255) tGACCTGTGCGCCCATCATGGTGTCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGa > 4:367122/1‑135 (MQ=255) tgtgCGCCCATCATGGTGTCCGTGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTgg < 3:158470/135‑1 (MQ=255) gcgcCCCTCATGGTGTCCGGGGTCAATGGGTCACCCACACGCCCAGCTTCGAACTTATGCTTGAGCGCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGc < 6:20096/133‑1 (MQ=255) gcCCATCATGGTGTCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTg > 5:381879/1‑135 (MQ=255) gcCCATCATGGTGTCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTg > 6:149270/1‑135 (MQ=255) gcCCATCATGGTGTCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTg > 3:63382/1‑135 (MQ=255) gcCCATCATGGTGTCCGGGTTC‑ATGGGTCTCCCCCACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTgg > 7:15715/1‑135 (MQ=255) catcatGGTGTCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGtt < 4:235373/135‑1 (MQ=255) gactggtCCGGGTTCAATGGGTCACGCTCACGCTCAGCTTCGAACTTAAGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCcac < 4:172960/130‑1 (MQ=255) tGGTGTCCGGGTTCAATGTGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCcac < 1:46155/134‑1 (MQ=255) tGGTGTCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCcac < 4:88003/134‑1 (MQ=255) tGGTGTCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCcac < 2:102646/134‑1 (MQ=255) tGGTGTCCGGGATCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCcac < 7:324003/134‑1 (MQ=255) tGGGGTCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCcac < 1:135897/134‑1 (MQ=255) gtCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGAt < 7:70167/135‑1 (MQ=255) gtCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGAt < 2:158498/135‑1 (MQ=255) gtCCGGGTTCAATGGGGCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGAt < 6:362151/135‑1 (MQ=255) ggTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGa > 2:47362/1‑135 (MQ=255) gTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGa > 1:316345/1‑134 (MQ=255) aaTGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACt < 8:322364/135‑1 (MQ=255) aTGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACt < 7:50693/134‑1 (MQ=255) ggTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTCGCCTTGGTTCCACAGGATGGCGAGGAcctgtc > 3:172960/1‑130 (MQ=255) cACCCACACGCACATCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCtt < 3:181559/135‑1 (MQ=255) cACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCtt > 1:170097/1‑135 (MQ=255) cACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCtt < 1:277410/135‑1 (MQ=255) aCCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCtt > 1:294507/1‑134 (MQ=255) aCCCACACGCACAGCTTCGAACTTATGCTTGAGCGCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTc < 5:66259/135‑1 (MQ=255) cTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTc > 4:198093/1‑133 (MQ=255) ttCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCa > 7:43468/1‑135 (MQ=255) tCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTACATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAg > 1:149668/1‑135 (MQ=255) cGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGt > 8:98014/1‑135 (MQ=255) aaCTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTc < 5:221792/135‑1 (MQ=255) cTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCggg > 1:286876/1‑135 (MQ=255) cTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCggg > 1:149602/1‑135 (MQ=255) cTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCgg > 3:164568/1‑134 (MQ=255) cTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCgg > 4:367322/1‑134 (MQ=255) cTTGAGCTCAGCCAGGAATCGATCGTAGATGGATTCGTGAACGAACAGCCGAGAGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCgg > 1:7033/1‑134 (MQ=255) gAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGa < 1:47362/134‑1 (MQ=255) cTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAAc > 1:138804/1‑135 (MQ=255) ggAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTgg < 6:125714/135‑1 (MQ=255) cGCTCGGAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATGCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGAc < 4:58626/135‑1 (MQ=255) cGCTCGCAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGAc < 4:58623/135‑1 (MQ=255) tCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTg < 2:80362/135‑1 (MQ=255) tCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTg > 6:249298/1‑135 (MQ=255) tCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGT‑CCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTgc > 5:334316/1‑135 (MQ=255) gTAGATGGATTCGTGAACGCACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGACTTCCACGGCATAGTCCCAGATCGCATCTGGGAAAACGATCTTGGCCGACTAgcc > 7:366074/1‑135 (MQ=255) gTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACtt < 3:298215/47‑1 (MQ=255) gTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACtt > 4:298215/1‑47 (MQ=255) gTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTgcc < 7:98014/135‑1 (MQ=255) gTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTgcc < 7:367552/135‑1 (MQ=255) tAGATGGATTCGTGAACGAACAGCCGAGCGGCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTgcc < 4:240874/134‑1 (MQ=255) tAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTgcc < 3:372937/134‑1 (MQ=255) tAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTgcc < 2:170097/134‑1 (MQ=255) tAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTgcc < 2:316345/134‑1 (MQ=255) tAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTgcc < 3:171099/134‑1 (MQ=255) tGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTGCCGCCCa > 4:207796/1‑135 (MQ=255) cGTGAACGAACAGCCGAGCGCCGGATTCGCAGATTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTGCCGCCCAGTTCaa > 2:253328/1‑135 (MQ=255) cGTGAAAGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTc < 2:30781/73‑1 (MQ=255) cGTGAAAGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTc > 1:37452/1‑73 (MQ=255) cGTGAAAGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTc > 1:30781/1‑73 (MQ=255) cGTGAAAGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTc < 2:37452/73‑1 (MQ=255) gaacgaacAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTGCCGCCCAGTTCAAggg > 6:142093/1‑135 (MQ=255) | AGGATCCGTTCCATCTGGGTCTTGCTGACCTGTGCGCCCATCATGGTGTCCGGGTTCAATGGGTCACCCACACGCACAGCTTCGAACTTATGCTTGAGCTCAGCCAGGAATCGCTCGTAGATGGATTCGTGAACGAACAGCCGAGCGCCGGATTCGCAGACTTGGCCTTGGTTCCACAGGATGGCGAGGACTGCGCCTTCCACGGCCTTGTCCCAGTTCGCATCGGGGAAAACGATGTTGGCCGACTTGCCGCCCAGTTCAAGGG > ACB122/2827426‑2827690 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |