Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | ACB122 | 3,412,899 | G→A | 5.8% | P85S (CCT→TCT) | lexA_2 ← | LexA repressor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB122 | 3,412,899 | 0 | G | A | 5.8% | 213.6 / 2.1 | 69 | P85S (CCT→TCT) | lexA_2 | LexA repressor |
Reads supporting (aligned to +/- strand): ref base G (26/39); new base A (2/2); total (28/41) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.06e-01 |
GTCACCAAGTACCTTTAGGGCATAACCGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAGGGAGTACCCCATACTCCAGCCATTCGCGGCGTACGTTC > ACB122/3412765‑3413029 | gTCACCAAGTACCTTTAGGGCATAACCGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAgg < 8:70330/135‑1 (MQ=255) cACCAAGTACCTTTAGGGCATAACCGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCa > 3:262674/1‑135 (MQ=255) cAAGTACCTTTAGGGCATAACCGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCt < 3:290928/135‑1 (MQ=255) aaGTACCTTTAGGGCATAACCGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCtt > 5:23092/1‑135 (MQ=255) aCCTTTAGGGCATAACCGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCg < 8:301367/135‑1 (MQ=255) cTTTAGGGCATAACCGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGaa < 6:212687/135‑1 (MQ=255) ttAGGGCATAACCGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAAc > 4:187378/1‑135 (MQ=255) aGGGCATAACCGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACg < 3:187378/134‑1 (MQ=255) gggCATAACCGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCt > 1:249165/1‑135 (MQ=255) tAACCGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGt > 3:13169/1‑135 (MQ=255) ccGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACg < 4:285134/125‑1 (MQ=255) ccGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACg < 6:346313/125‑1 (MQ=255) ccGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACg > 5:346313/1‑125 (MQ=255) ccGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACg > 3:285134/1‑125 (MQ=255) ccGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTAtt > 1:84458/1‑135 (MQ=255) cGCTGTCGCTGGTGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTc < 7:200990/135‑1 (MQ=255) cGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTAtt > 8:225672/1‑134 (MQ=255) cGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTc < 2:332578/135‑1 (MQ=255) tCGCTGATGGGGACTGGGCATTACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTACACTc > 1:189948/1‑135 (MQ=255) ggggACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGa > 2:252249/1‑135 (MQ=255) aCTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGa < 6:23092/135‑1 (MQ=255) aCTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGa < 6:370848/135‑1 (MQ=255) aCTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGa < 8:44612/135‑1 (MQ=255) gCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGc > 5:339467/1‑134 (MQ=255) cATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCg < 2:115451/135‑1 (MQ=255) aTGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGCACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGa > 6:318184/1‑135 (MQ=255) agccagcTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCa > 5:358259/1‑100 (MQ=255) agccagcTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCa < 6:358259/100‑1 (MQ=255) ccagcTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGAAg < 3:203647/135‑1 (MQ=255) agcTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTAATCCACTCACATTGGATTGATCGCCGACCTGGAGtt < 3:49084/135‑1 (MQ=255) gcTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTGTTCCACTCACATTGGATTGATCGCCGACCTGGAGTTg > 5:343923/1‑135 (MQ=255) gcTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTg > 2:88177/1‑135 (MQ=255) tATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGt < 7:218151/135‑1 (MQ=255) cTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAAcc < 2:241616/133‑1 (MQ=255) cTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAAcc < 2:75484/133‑1 (MQ=255) tAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCTCTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTg < 6:339467/135‑1 (MQ=255) aaaaTTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTc > 6:169061/1‑135 (MQ=255) aaaaTTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCGTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGCCCTGGAGTTGGTGAACCTTACTGTTAGGCTc > 7:41000/1‑135 (MQ=255) aaaaTTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGACACCt < 4:259144/59‑1 (MQ=255) aaaaTTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGACACCt < 4:254355/59‑1 (MQ=255) aaaaTTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGACACCt > 3:254355/1‑59 (MQ=255) aaaaTTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGACACCt > 3:259144/1‑59 (MQ=255) aaaTTTGAGATTGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTTGTGAACCTTACTGTTAGGCt < 4:62576/133‑1 (MQ=255) aaaTTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCt < 1:88177/133‑1 (MQ=255) agaTGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCt < 2:249165/134‑1 (MQ=255) gaTGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCttt < 2:84458/135‑1 (MQ=255) tgtcctCACACCATCCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAg < 3:195349/130‑1 (MQ=255) tGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAg < 5:148459/135‑1 (MQ=255) tGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAg < 3:191247/135‑1 (MQ=255) ggCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAgg < 1:224295/135‑1 (MQ=255) acacCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAGGGAGTAc < 1:174990/135‑1 (MQ=255) acacCATGCCCCCGCTAGAACCCAGGAGATTAGAGGCCCATTCCCGAAACGCTCCAGTATTCCCCTCACATTGGATTGATCGCAGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAGGGAGTAc > 5:167458/1‑135 (MQ=255) cacCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAGGGAGTAc < 4:13169/134‑1 (MQ=255) cacCATGCCCCCGCTTGAACCCAGACGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAGGGAGTAcc < 6:215790/135‑1 (MQ=255) cacCATGCCCCCGCTTCAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAGGGAGTAc < 3:189902/134‑1 (MQ=255) ccccGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCg > 2:168224/1‑76 (MQ=255) ccccGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCt < 7:120609/80‑1 (MQ=255) ccccGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCt > 8:120609/1‑80 (MQ=255) ccccGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAGGGAGTACCCCATACt > 8:328029/1‑134 (MQ=255) ccccGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAGGGAGTACCCCATACt > 5:265392/1‑134 (MQ=255) ccccGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGCTGAACCTTACTGTAAGGCTCCAGGGATTTAGTCAGTACCCCATACt > 7:225607/1‑134 (MQ=255) ccccGCTTGAACCAAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCg < 1:168224/76‑1 (MQ=255) aaCCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAGGGAGTACCCCATACTCCAGCCAt < 7:225672/133‑1 (MQ=255) cccAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAGGGAGTACCCCATACTCCAGCCATTcgc < 6:273159/135‑1 (MQ=255) agaTTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAGGGAGTACCCCATACTCCAGCCATTCGCGGCGTa > 6:5614/1‑135 (MQ=255) aTTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGtt > 8:79513/1‑67 (MQ=255) aTTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGtt < 7:79513/67‑1 (MQ=255) ttAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACTTTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAGGGAGTACCCCATACTCCAGCCATTCGCGGCGTACGt < 1:135782/135‑1 (MQ=255) ctAGCGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATGGCTCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCGTGGGCTTTAGGGAGTACCCCATACTCCAGCCATTCGCGGCGTACGt < 7:100364/134‑1 (MQ=255) gagGCACCTTCCCGAAACGCTACAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAGGGAGTACCCCATACTCCAGCCATTCGCGGCGTACGTTc < 4:65451/134‑1 (MQ=255) | GTCACCAAGTACCTTTAGGGCATAACCGCTGTCGCTGATGGGGACTGGGCATGACAGCCAGCTATCTGCCTGGTAGGGCTCAAAATTTGAGATGGCTTCACACCATGCCCCCGCTTGAACCCAGGAGATTAGAGGCACCTTCCCGAAACGCTCCAGTATTCCACTCACATTGGATTGATCGCCGACCTGGAGTTGGTGAACCTTACTGTTAGGCTCCTGGGCTTTAGGGAGTACCCCATACTCCAGCCATTCGCGGCGTACGTTC > ACB122/3412765‑3413029 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |