Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | ACB122 | 3,389,709 | T→G | 32.4% | L121R (CTG→CGG) | yfdE → | Acetyl‑CoA:oxalate CoA‑transferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB122 | 3,389,709 | 0 | T | G | 32.4% | 77.1 / 5.4 | 59 | L121R (CTG→CGG) | yfdE | Acetyl‑CoA:oxalate CoA‑transferase |
Reads supporting (aligned to +/- strand): ref base T (5/33); new base G (16/3); total (23/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.34e-07 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GAAGGACCCGCGCGGCAAGGCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCGGGATCATGCAGATGGTGGGCGTGCCGGGCGAGGCACCGCCGCT > ACB122/3389575‑3389838 | gAAGGACCCGCGCGGCAAGGCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCt > 8:201796/1‑135 (MQ=255) gccccGCGCGGCAAGGCGTTCATGCAGCGCATGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCCGCGCGCCACCCCCCCCTgggg > 8:182431/3‑133 (MQ=255) cgcgcgGCAAGGCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACt < 2:87952/135‑1 (MQ=255) cgcgGCAAGGCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCGGGGGTACGGc > 5:196891/1‑135 (MQ=255) gcgGCAAGGCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCCACCCGCGCCGGGGGTTCGGCt > 7:327274/1‑135 (MQ=255) ggCAAGGCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCT‑GGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGa < 2:267668/135‑1 (MQ=255) ggCAAGGCGTACATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCCCCCCGGGGGTACTGCT‑c > 3:353565/1‑134 (MQ=255) gCAAGGCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGa < 8:437130/135‑1 (MQ=255) gCAAGGCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGa < 8:356365/135‑1 (MQ=255) aGGCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCCGCCCGCCCCCCGCCCCCGGTGTACTGCT‑AGAgtt > 6:365833/1‑135 (MQ=255) gCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTcc < 5:191793/135‑1 (MQ=255) gCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTcc < 6:249567/135‑1 (MQ=255) gCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTcc < 3:428285/135‑1 (MQ=255) gCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTcc < 2:64824/135‑1 (MQ=255) gCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCGGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTcc < 6:201079/135‑1 (MQ=255) gCGTTCATGCAGCGCCTGACCGATTCGCGCGACGTGTTCAGCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTcc < 1:223938/135‑1 (MQ=255) gCGTTCAGGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTcc < 7:244421/135‑1 (MQ=255) tGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCCCAACCCGCGCCGGGGATACAGCT‑CGATTTCCCCCAACg > 1:66347/1‑135 (MQ=255) ccTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCCACCCGCGCCGGGTGTACTGCT‑CGATTTCCGCCTACGGCCAAAc > 1:306684/1‑135 (MQ=255) ccTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATAc < 8:118182/135‑1 (MQ=255) tGACCGATTCGGCCGACGGGTTCAGCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCGGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCg < 7:27392/135‑1 (MQ=255) gACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCCACCCGCGCCGGGTGTACTGCT‑CGCTTTCCGCCAACGGCCCTAcccg > 3:406258/1‑133 (MQ=255) cGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCCACCCCCGCCGGGGGGACTGCG‑CGCTTTTCGCCATCCGCCCTACCGGGcccggcc > 4:283016/1‑130 (MQ=255) ccGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCACCCCGCGCCGGGGGTACTGGG‑CGATTTCCGCCTACGGCCATACCGGGCCGGCCGccc > 6:226394/1‑135 (MQ=255) aCGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGGCACCCCCGCCGGGGGTACGGCT‑CGATTTCCGCCTACGGCCCTACCGGGCCGGCCGcccccc > 4:36356/1‑135 (MQ=255) gtTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGCTTTCCGCCTACGGCCATACCGGGCCGGACGCCCCCCgcgc > 2:271237/1‑135 (MQ=255) cGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCCCCACCCGCCCCCGGTGTAAGGCT‑CGCTTTACGCCTAACGCCATACCCCGCCCGACGCCCCCCGCCCCCGCtt > 6:316053/1‑135 (MQ=255) ccccGGCGCCCTGGACACGCTGGGCCTGGGCTACGCCGAGCTGGCGGCGCGCAACCCGGGGCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCGCACCGCGCCGGCTTCGGTCTGATCGc < 1:51465/135‑1 (MQ=255) cGGCGCCCTGGACAAGCTGGGCCTGGGCTACGACGAGCTGTCGGCCCGCAACCCGCGCCGGGTGGACTGAG‑CGATTTACGACAACGGCCATAACGCGCAGGCCGCCCCCCCCCCCGCCGTCGCTATGATAGCCGa > 4:379725/1‑135 (MQ=255) ggCGCCCTGGACACGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAg < 5:255995/135‑1 (MQ=255) ggCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCGTCGGTCTGATCGCCGAg < 8:134936/135‑1 (MQ=255) ggCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGGCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAg < 8:294823/135‑1 (MQ=255) cccTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCGGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCGTCGGTCTGATCGCCGAGGCCa > 4:382577/1‑135 (MQ=255) ccTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCaa < 1:394707/135‑1 (MQ=255) aCAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCCACCCGCGCCGGGGGTTCTGCG‑CGCTTTACCCCTACGGCCCTACCCGGCCGGCCGCCCCCCCCGCCGGCGTCGGTCTGGTCGCCCCGGCCCAGAGCg > 3:344531/1‑135 (MQ=255) aCAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCg < 4:394853/135‑1 (MQ=255) aCAAGCTGGGCCTGGGCTACGCCGAGCTGGCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAagag < 7:42876/133‑1 (MQ=255) aCAAGCTGGGCCTGGGCGACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCg < 4:163457/135‑1 (MQ=255) cAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCATCCCGCGCGTGGTGTTCTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCTAGAGCgg < 2:132417/135‑1 (MQ=255) cAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCgg < 8:44797/135‑1 (MQ=255) cAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCgg < 7:194466/135‑1 (MQ=255) cAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGCCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCgg < 1:170635/135‑1 (MQ=255) cAAGCTAGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTTTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCgg < 6:419217/135‑1 (MQ=255) ctgggcctgggcTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCGGGATc < 3:382577/135‑1 (MQ=255) ctgggcctgggcTACGCCGAGCTGGCGGCGCGCAACCCGCGCCGGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCGGGATc < 2:12906/135‑1 (MQ=255) gcctgggcTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCGGGATCAt < 7:230550/133‑1 (MQ=255) tgggcTACGCCGATCGGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCGGGAGCATGCAGa < 7:182431/135‑1 (MQ=255) tACGCCGAGCTGTCGGCGCGCCACCCGCGCCGGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCCCCGCGCCGGCTTCGGTCGGATCGCCGCGGCCAAGAGCGGGATCATGCCGAtggtg > 1:403255/1‑135 (MQ=255) tACGCCGAGCTGTCGGCGCGCCACCCCCGCCGGGGGTTCTGGG‑CGATTTGCGCCAACGGCCCTACCGGGCCGGCCGCCCCCCCCGCCCGCGTCGGTGTGATAGCCGCGGCCAAGCGCCGGGTCATGCAGAtggtg > 6:32467/1‑135 (MQ=255) ccGAGCTGTGGGCGCGCAAACCCAGGCTGGTTTACTGCTGCGA‑TTACGCCGAAGGGCAATCCCGGCCCGAAGCCCACCCCCCCCGCGTCAGTAGTAACGCCGAGGCCAAGAGCGGGCTCATGTAGCTGGTggggc > 6:442950/1‑133 (MQ=255) cGAGCTGGCGGCGCGCAACCCGCGCCGGGTGTACTGCT‑CGATTGCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTGCGGTCTGATCGCCGAGGCCAAGAGCGGGATCATGCAGATGGTGGGCGt < 1:80963/135‑1 (MQ=255) gCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGCCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCGGGATCATGCAGATGGTGGGCGTGcc < 4:411063/135‑1 (MQ=255) tGTCGGCGCGCCACCCGCGCCGGGTGTTCGGCG‑CGCTTTCCGCCTACGGCCCTACCGGGCCGGACGCCCCCCGCGCCCGCGTGGGTCCGCTAGCCGAGGGCCAGAGCGGGATCATGCAGATGGTGGGCGTGCCgg > 2:3597/1‑135 (MQ=255) tGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCGGGATCATGCAGATGGTGGGCGTGCCgg > 3:351685/1‑135 (MQ=255) tGTCGGCGCGCAACCCGCGCCTGGTGTACTGCG‑CGATTTCCGCCTACGGCCATACCCGGCCCGCCGCCCCCCCCGCCGGCGTCGGTCTGCTAGCCGCGGCCAAGCGCGGGATGATGCAGATTGTGGGCGTGCCgg > 8:432212/1‑135 (MQ=255) gcgcgcAACCCGCGCCGGGTGTACTGCG‑CGATTTCCGCCTACGGCCATACCCGGCCCGACGCCCCCCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCGGGATCATGCAGATGGTGGGCGTGCCGGGCGAg > 4:337018/1‑135 (MQ=255) cgcgcAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCGGGATCATGCAGATGGTGGGCGTGCCGGGCGAgg < 6:196891/135‑1 (MQ=255) aaCCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCGGGATCATGCAGATGGTGGGCGTGCCGGGCGAGGCAccg < 3:346252/135‑1 (MQ=255) ccGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCGGGATCATGCAGATGGTGGGCGTGCCGGGCGAGGCAccgccg < 1:251374/135‑1 (MQ=255) gcgcCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCGGGATCCTGCAGATGGTGGGCGTGCCGGGCGAGGCACCGCCgct < 2:170458/135‑1 (MQ=255) | GAAGGACCCGCGCGGCAAGGCGTTCATGCAGCGCCTGACCGATTCGGCCGACGTGTTCATCGAGAACTACCGCCCCGGCGCCCTGGACAAGCTGGGCCTGGGCTACGCCGAGCTGTCGGCGCGCAACCCGCGCCTGGTGTACTGCT‑CGATTTCCGCCTACGGCCATACCGGGCCGGACGCCCACCGCGCCGGCTTCGGTCTGATCGCCGAGGCCAAGAGCGGGATCATGCAGATGGTGGGCGTGCCGGGCGAGGCACCGCCGCT > ACB122/3389575‑3389838 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |