Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB122 | 4,135,607 | 0 | A | C | 50.0% | 8.7 / 10.9 | 39 | Q32P (CAG→CCG) | tgnC | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
Reads supporting (aligned to +/- strand): ref base A (9/10); new base C (17/2); total (26/13) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.28e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
CCCTCACCGAATCCGCCAAGGGGATTGTTGCATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCAGGCCTGGGCGCAACTGCCCGACGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGTGCCTTCGACAGCAAGGCGTGGCGCAGCATCACCGCTACCGCCCGCGGCAAGCTGCTGCGT > ACB122/4135482‑4135734 | cccTCACCGAATCCGCCAAGGGGATTGTTGCATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCCGGCCTGGgc > 6:88676/1‑135 (MQ=255) ccTCACCGAATCCGCCAGGGGGATTGTTGAATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCAATTGGCGCGAGGCCAAGAGCGGCAAGACATTCGACAGCCTCAACCCGGCCACCGCCCAGGCCTGGgcg < 6:45688/135‑1 (MQ=255) ccTCACCGAATCCGCCAAGGGGATTGTTGCATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCCGGCCGGGgcg > 1:140853/1‑135 (MQ=255) ccTCACCGAATCCGCCAAGGGGATTGTTGCATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCAGGCCTGGgcg < 3:87140/135‑1 (MQ=255) cTCACCGAATCCGCCAAGGGGATTGTTGCATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCCCCGCCCCCGCCGGGgcgc > 5:163358/1‑135 (MQ=255) ccGAATCCGCCAAGGGGATTGTTGCATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCACCCCGGCCACCGCCCAGGCCTGGgcgccgcg > 1:359242/1‑131 (MQ=255) ccGAATCCGCCAAGGGGATTGTTGCATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCAGGCCTGGGCGCACCt > 2:285206/1‑135 (MQ=255) ccGAATCCGCCAAGGGGATTGTTGCAGGACCCTCGTTGGTTTCCAGTTGTGCAGCGCGGGCCAAGGGGGCGAGGCCCAGCGCGGCAAGACCTTCGACAGCCACAACCCGCCCCCCCCCCAGGCCTGGGCGCAACt < 6:163358/135‑1 (MQ=255) cGAATCCGCCAAGGGGATTGTTGCATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCCGGCCAGGgcgccccag > 4:170358/1‑130 (MQ=255) gCCAAGGGGATTGTTGCATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCAGGCCTGGGCGCCACTGCCCGACg > 4:52331/1‑135 (MQ=255) gCCAAGGGGATTGTTGCATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCAGGCCTGGGCGCACCAGCCCGACg > 1:94701/1‑135 (MQ=255) gCCAAGGGGATTGTTGCATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGACCAGAGCGGCAAGACCTTCGCCAGCCTCAACCCGGCCACCGCCCCGGCCGGGGCGCAACGGCccgccg > 7:280777/1‑135 (MQ=255) gttgCATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCACCCCGGCCACCGCCCCGGCCTGGGCGCCACGGCCCGCCGCCGATGCAGCCg > 1:125626/1‑135 (MQ=255) gttcgttTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCTGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCCCGCCAGGGCGCCAATGCCCCCCGCCGATGCAGCCGCTGGGGCGCTGGcc > 2:379159/1‑135 (MQ=255) gttcgttTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCCGGCCGGGGCGCCACTGCCCCCCGCCCAGTCAGCCGATGTGGAGGTgggc > 2:154931/1‑133 (MQ=255) tcgttTCCAGATGTGCATCGACGGCCAATGGAGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCAGGCCTGGGCGCAACAGCCCGCCGCCTATTACGACGATGTTGAGCTTGCCGt > 7:188894/1‑135 (MQ=255) ccAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCCGGCCAGCGGGCCCCTGCCCCCCCCCCACCAACCCGCAGGGGAGCGGGGCGTTCAgtg > 7:73198/1‑133 (MQ=255) aTCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCAGGCCTGGGCGCAACTGCCCGCCGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGt > 6:274514/1‑135 (MQ=255) cGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCCGGCCTGGGCGCAACTGCCCGCCCCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGTGc > 3:62189/1‑135 (MQ=255) aCGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCCGGCCGGGGCGCCACTGCCCCCCGCCGCTGACGCCGCTGTGGCGCTGGCCGGTCCGGCCGCCCCGCGGGccg > 8:268140/1‑134 (MQ=255) cAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCCGGCCTGGGCGCCACTGCCCGACGCCGCTGAAGCCGATGTGGAGCTGGGCGTTCAGGCCGCCCCGCGTGCCGTCgcc > 2:121690/1‑133 (MQ=255) cgcgAGGCCCAGAGCGGAAAGCCCTTCGACAGCCGCACCCCGGACACCGCCCAGGCCTGGGCGCAACTGCCCTACGACGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGTGCCTTCGACAGCAAg < 4:230658/135‑1 (MQ=255) ggCCCAGAGCGGCAAGCCCTGCGACAGCCTCACCCCGGCCACCGCCCAGGCCTGGGCGCAACTGCCCGACGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGTGCCTTCGACAGCAAGGCGTg < 8:106818/134‑1 (MQ=255) ggCCCAGAGCGGCAAGACCTTCGACAGCCTCACCCCGGCCACCGCCCAGGCCTGGGCGCAACTGCCCGACGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGTGCCTTCGACAGCAAGGCGTg < 4:123212/134‑1 (MQ=255) gCGGCAAGACATTCGAAAGCCTCAACCGCGCCACCGCCCAGGCCTGGGCGCAACTGCCCGACGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGTGCCTTCGACAGCAAGGCGTGGCgcagca < 8:316951/135‑1 (MQ=255) aGACCTTCGACAGCCTCAACCCGGCCACCGCCCAGGCCTGGGCGCAAATGCCCGACGCCGATGAATCCGATGTGGCGCTGGCCGTTAAGGCCGCCCAGCGTGCCGTCGACAGCAAGGCGTGGCGCAGCATCACCg > 2:255786/1‑135 (MQ=255) ttCGACCGCCTCACCCCGCCCCCCCCCCAGGCGGGGGCGCAACTGCCCGACGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGTGCCTTCGACAGCAAGGCGTGGCGCAGCATCACCGCTAcc < 3:52331/135‑1 (MQ=255) gACAGCCTCAACCCGGCCACCGCCCAGGCCTGGGCGCAACTGCCCGACGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGTGCCTTCGACAGCAAGGCGTGGCGCAGCATCACCGCTAccgc < 6:64432/134‑1 (MQ=255) aCAGCCTCAACCCGGCCCCGGCCCTGGCGGGGGCGCAACTGCCCGACGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGTGCCTTCGACAGCAAGGCTTGTCGCAGCATCACCGCTAccgc < 5:176054/133‑1 (MQ=255) gCCTCACCCCGGCCACCGCCCAGGCCTGGGCGCAACTGCCCGACGCCGATGAAGCCGATGTGGAGCGGGCCGTGCAGGCCGCCCAGCGTGCCTTCGACAGCAAGGCGTGTCGCAGCATCACCGCTACCGCCcgcg < 8:183420/135‑1 (MQ=255) cccTCACCCCGGCCCCCGCCCCGGCCGGGGCGCAACTGCCCGACGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGTGCCTTCGACAGCAAGGCGTGGCGCAGCATCACCGCTACCGCCcgcg < 5:214162/134‑1 (MQ=255) cAACCCGGCCACCGCCCCGGCCTGGGCGCAACAGCCCGACCCCGCTGAAGCCGCTGTGGAGCAGGCCGTTTAGGCCGCCCCCCGTGCCGTCGCCAGCAACGCCTGGCGCCGCCAAACCGCTCACGCCcgccgcca > 2:86931/1‑133 (MQ=255) cAACCCGGCCACCGCCCCCGCCAGGGCGCACCTGCCCGCCGCCGCTGAAGCCGATGTGGAGCTGGCCGTTAAGGCCGCCCCGCGTGCCTTCGACAGCAAGGCGTGGCGCAGCATCACCGCGACCGCCCCCGGcca > 8:133209/1‑133 (MQ=255) cAACCCGGCCACCGCCCAGGCCTGGGCGCAACTGCCCGACGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGTGCCGTCGACAGCAAGGCGTGGCGCAGCATCACCGCTACCGCCCCCGGcca > 8:380878/1‑133 (MQ=255) ccGGCCACCGCCCCGGCCTGGGCGCAACTGCCCGCCGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCCGCGTGCCTTCGACCGCAAGGCGTGGCGCCGCATCACCGCTACCGCCCGCGGCAAgctg > 8:106983/1‑135 (MQ=255) ggCCTCCGCCCCGGGGGGGCCGCAACTGCCCGACGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGTGCCTTCGACAGCAAGGCGTGGCGCAGCATCACCTCTACCGCCCGCGGCAAgctgct < 3:86357/135‑1 (MQ=255) aCCGCCCCGGCCTGGGCGCCACTGCCCGCCGCCGCTGAAGCCGCTGTGGTGCTGGCCGTTCAGGCCGCCCAGCGTGCCGTCGCCAGCCAGGCGTGGCGCCGCATAACCGCTACCCCCCCCGGCAAGCGGCTGcgt > 6:125229/1‑135 (MQ=255) aCCGCCCCGGCCTGGGCGCCACTGCCCGCCGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGTGCCGTCGCCCGCAAGGCGTGTCGCCGCCTCACCGCGACCCCCCCCGGCCAGCTGCTGcgt > 8:59010/1‑135 (MQ=255) aCCGCCCAGGCCTGGGCGCAACTGCCCGCCGCCGCTGAAGCCGATGTGGCGCTGGCCGTTGAGGCCGCCCAGCGAGCCTTCGCCAGCAAGGCGTGGCGCCGCATAACCGCTACCGCCCGCGGCAAGCAGCGGcgt > 6:295061/1‑135 (MQ=255) | CCCTCACCGAATCCGCCAAGGGGATTGTTGCATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAACCCGGCCACCGCCCAGGCCTGGGCGCAACTGCCCGACGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGCGTGCCTTCGACAGCAAGGCGTGGCGCAGCATCACCGCTACCGCCCGCGGCAAGCTGCTGCGT > ACB122/4135482‑4135734 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |