Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB143 | 2,066,445 | 0 | C | G | 40.5% | 52.4 / 10.5 | 42 | R7P (CGC→CCC) | fatA_1 | Ferric‑anguibactin receptor FatA |
Reads supporting (aligned to +/- strand): ref base C (14/11); new base G (0/17); total (14/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.21e-04 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GTGCCTGGTAGCCATCATTGGCGTAGGTGTCGGAGACCTGCAATGGGGCCAGCATCACGCTGTCTTCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACACCGGGTGGTGATACACCAGATGGTGATCCCCCTGTA > ACB143/2066320‑2066564 | gTGCGTGGTAGCCATCATTGGCGTAGGGGTCGTAGACCTGCATGGGGGCCAGCATCACGCGGTCTTCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCGCAGGGGCAGGCGGGGGTGAt < 8:137960/135‑1 (MQ=255) ggTAGCCATCATTGGCGTAGGTGTCGGAGACCTGCAATGGGGCCAGCATCACGCTGTCTTCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCggggg > 3:42808/1‑136 (MQ=255) gtCGGAGACCTGCAATGGGGCCAGCATCACGCTGTCTTCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGAt > 2:80125/1‑135 (MQ=255) ggcGGACACCTGCAAGGGGGCCAGCACCCCGCTGTCTGCGGCACCCACCCTGGGCCACTGCCGGCCCCGGCCCTGGCTGAGCCGGCTCAGGGGCCGGCGGGGGTGAGGCGGGGGCATGCGGTGGGGCTCCTGGATg < 4:123061/134‑1 (MQ=255) tCGGCGACCTGCAATGGGGCCAGCACCACGCTGTCTTCGGCACGCACAGAGGGCCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGGGATGCGGGGGCATGCGGGGGGGCTCCTGGATg < 7:54806/135‑1 (MQ=255) gcgccgaCCTGCATGGGGGCCAGCAGCCCGCTGTCTGCGGCACCCACAGTGGGCCCCTCCTGGGCCAGGCCCTGGCTGAGCTGGGGCTGGGGCAGGGGGGGGTTTGGCGGGGGCATGCGGTGGGGCTCCTGGATg < 8:42623/130‑1 (MQ=255) gaCCTGCAATGGGGCCAGCATCACGCTGTCTTCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGcgcg > 5:73855/1‑134 (MQ=255) gCAATGGGGCCAGCATCACGCTGTCTTCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCt > 5:152525/1‑135 (MQ=255) cAATGGGGCCAGCATCACGCTGTCTTCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCt > 5:100517/1‑134 (MQ=255) ccAGCATCCCGCTGTCTTCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGcc > 1:328353/1‑135 (MQ=255) aGCATCACGCTGTCTTCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCt > 1:203676/1‑135 (MQ=255) aGCATCACGCTGTCTTCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGAGGTGGGCCTCCTGGATGCGCGATACCTGTACTGGCCCt > 8:369423/1‑135 (MQ=255) gCATCACGCTGTCTTCGGCACCCCCAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGCCCCGGCTCTGGGGCCGGGGGGGGGGAGGCGGGGGCATGCGGGGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCtt < 8:213419/135‑1 (MQ=255) aTCACGCTGTCTTCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTc > 2:142782/1‑135 (MQ=255) aTCACGCTGTCTTCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTc > 6:234405/1‑135 (MQ=255) aCGCTGTCTTCGGCAAGCACAGAGGGGCACTGCCGGGCCCGGCCCAGGCTGAGCCGGCTCTGGGGCAGGCGGGGGTGAGGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTcgcg < 7:54365/135‑1 (MQ=255) tGTCTTCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCACAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCgggg > 6:5747/1‑133 (MQ=255) tGTCTTCGGCAACCACCGCGGGCCACTGCTGGGCCAGGCCCAGGCTGCCCCGGCTCCGGGGCAGGGGGGGGTGAGGCGGGGGCATGCGGGGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑Taa < 3:80196/136‑1 (MQ=255) tGTCTGCGGCAACAAATGCGGGGCACGGCAGGGCACGGCCAAGGGTGAGCTGGCTCTGGGTCTGGGGGGGGTGATGGGGGGGCTTGGGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑Taa < 3:125701/136‑1 (MQ=255) tGTCTGCGCCAAGCACTGCGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGGGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑Taa < 3:364313/136‑1 (MQ=255) tgcTTCGGCACCCACCTCGGGCCACTGCTGGGCATGCCCCAGGCTGTGCAGGCACAGGGGCCGGGGGGGGTGATGGGGGGGCTTGCGGGGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑Taa < 8:279705/133‑1 (MQ=255) ggctgcGGCACGCACGGGGGGGCACTGCTGGGCCTGGCCCTGGCTGCGCTGGGTCTGGGGCGGGGGGGGGTGTGGCGGGGGCTTGGGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑Taa < 5:31074/130‑1 (MQ=255) tCTTCGGCACGCACTGCGGGGCACTGCAGGCCCCGGCCCAGGCTGACAAGGCGCAGGGCCTGGCGGGGGTCATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑Taaa < 7:197427/135‑1 (MQ=255) gtgcGGCAAGCACCGCGGGCCCCGGCTGGGACCGGCCCCGGCTGCCCTGGCTCGGGGGCTGGCGGGGGGGAGGCGGGGGCAGGGGGGGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAAc < 2:285364/132‑1 (MQ=255) attCGGTAAGCACTGCGGGCCACTGCGGGGCCAGGCCCCGGCTGAGCAGGCTACGGGGCAGGGGGGGGGGAGGCGGGGGCTGGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑Taa < 8:218939/132‑1 (MQ=255) tCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAAccc > 1:58135/1‑135 (MQ=255) ggCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGGTTAAAcccc > 1:62411/1‑134 (MQ=255) cgcgggcCACTCCAGGCCCCGGCCCTGGCTCCCCAGGCTCAGGGCCAGGGGGGGGTTATGCGGGGCCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACAcc < 2:58135/132‑1 (MQ=255) atcggggCACTGCTGGGCCAGGCCCTGGCTGAGCAGGCTCTGGGGCAGGGGGGGGGGATGCGGGGGCTTGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACAcc < 8:46068/132‑1 (MQ=255) cACGGCCGGGCCTGGCCCAGGCGGAGCAGGCGCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGGGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACACCGggtggt < 7:57145/135‑1 (MQ=255) cACGGCCGGGCCCTGCCCAGGCTGAGCAGGCGCGGGGGCAGGCGGGGGGGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACACCGggtggt < 8:291704/135‑1 (MQ=255) acggctgggCCTGGCCCTGGGTGAGCTGGCTCTGGGGCTGGGGGGGGTGAGGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACACCGGgtggtg < 6:152525/129‑1 (MQ=255) gccctggcTTAGCAGGCTCAGGGGCAGGGGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACACCGGGTGGTGATACACCAGATGGt < 3:111980/136‑1 (MQ=255) gccctggcTGAGCAGGCTCCGGGGCCGGGGGGGGGGAGGGGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACACCGGGTGGTGATACACCAGATGGt < 4:354764/136‑1 (MQ=255) ccctggcGGAGCTGGCTCCGGGGCTGGGGGGGGGGAGGGGGGGGCAGGCGGGGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACACCGGGTGGTGATACACCAGATGGt < 5:314981/135‑1 (MQ=255) ccccggcTGAGCAGGCTCTGGGGCAGGGGGGGGTTATGCGGGGGCATGCGGGGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACACCGGGTGGTGATACACCAGATGGt < 1:105690/135‑1 (MQ=255) ccccggcTGAGCAGGCGCTGGGGCAGGCGGGGGTGTTGGGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACACCGGGTGGTGATACACCAGATGGt < 5:84387/135‑1 (MQ=255) cccaggcTGAGCAGGCTCTGGGGCTGGCGGGGGTGTTGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACACCGGGTGGTGATACACCAGATGGt < 2:246426/135‑1 (MQ=255) cccaggcTGAGCACGCTCCGGGGCAGGGGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACACCGGGTGGTGATACACCAGATGGt < 8:49524/135‑1 (MQ=255) ggcttcgCAGGCGCTGGGGCTGGGGGGGGGGAGGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACACCGGGTGGTGATACACCAGATGGTGATc < 2:219216/129‑1 (MQ=255) tgcgccggCTCCGGGGCCGGCGGGGGTGAGGCGGGGGCTGGCGGGGGGGCGCCTGGATGCGCGATACCTGTACTGGCCCCTTCGCGGG‑TAAACCCACTCCTACACCGGGTGGTGATACACCAGATGGTGATcccc < 2:281219/129‑1 (MQ=37) aGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TTAACCCACACATAACGCGGGTTGTGATTAAACACATGGTGGTgccccagga > 2:301597/1‑131 (MQ=255) | GTGCCTGGTAGCCATCATTGGCGTAGGTGTCGGAGACCTGCAATGGGGCCAGCATCACGCTGTCTTCGGCAAGCACAGAGGGGCACTGCAGGGCCAGGCCCAGGCTGAGCAGGCTCAGGGGCAGGCGGGGGTGATGCGGGGGCATGCGGTGGGGCTCCTGGATGCGCGATACCTGTACTGGCCCTTTCGCGGG‑TAAACCCACTCCTACACCGGGTGGTGATACACCAGATGGTGATCCCCCTGTA > ACB143/2066320‑2066564 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |