Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB143 | 3,273,878 | 0 | C | A | 30.9% | 60.4 / 11.1 | 42 | D40E (GAC→GAA) | fabG_5 | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase FabG |
Reads supporting (aligned to +/- strand): ref base C (16/13); new base A (0/13); total (16/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.65e-04 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
ACCAATGGAGGCAGGCATGTCAGAACAACAAAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCGTGATATAG > ACB143/3273743‑3273999 | aCCAATGGAGGCAGGCATGTCAGAACAACAAAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCTTAACCCGTCGCCAGGCCGACa > 5:184385/1‑137 (MQ=255) caTGTCAGAACAACAAAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCgctgc > 6:273034/1‑137 (MQ=255) caTGTCAGAACAACAAAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCgctgc < 2:61967/137‑1 (MQ=255) aacaaAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATa > 8:8288/1‑137 (MQ=255) aacaaAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATa > 6:136685/1‑137 (MQ=255) aacaaAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATa > 3:44091/1‑137 (MQ=255) gCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGGCGCCCGCCCGAAAAACTCCCCCCGCGGCTGGAGTAAATACACGCCGCTggcg < 2:210928/137‑1 (MQ=255) tGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTggcggc > 7:352214/1‑137 (MQ=255) tGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTggcggc > 6:237459/1‑137 (MQ=255) tGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTggcggc > 5:100655/1‑137 (MQ=255) gcGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGGCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGcc < 1:226645/136‑1 (MQ=255) gggcgggtGACGCCACTGTCGGCTATATCGGCAAGGTTTTTGCCGCG‑GAGGGCTATATTCCGTGCGTAACCCGTAGCAACGCCGAAAAACTGCAGCCGCTGCGGGAGGAAATACACGCCGCTGGCGGCCAGGCCTAc < 8:343283/137‑1 (MQ=255) gggggcgACGCCAGTGGCGGCTATAGCGCCAAGGGTTTTG‑CGGGTGAGGGCTATATGGCCTGCTTACCCCGGCGCCAGGCCGAAAAACTGCAGCCGCTGCTGGAGTAAAACCACGCCGCTGGCGGCCAGGCCTACgg < 4:121205/135‑1 (MQ=255) aCTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAATCTGCAGCCGCTGGTGGAGGAAATACACGCCGCTGGCGTCCAGGCCTACGGTTTTGGCTCTgc > 7:189143/1‑136 (MQ=255) aCTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCCTCCGCTGCTGGAGGAAATACACTCCGCTGGCGGCAAGGCCTACGGTTTTGGCTATGa > 8:5438/1‑137 (MQ=255) gggggggcgAGACCGCCAAGGGTTTTG‑CGCGTGAGGGATATATTGCCTGGTAAACCCGTCGCCCGCCCGAAAAACTGCCGCCGCTGCTGTAGTAAAAACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGAt < 6:187588/132‑1 (MQ=255) ggcggcGAGATCGCCAAGGGTTTTG‑CGCGTGCGGGCAATATGGCCTGCGTAACCCGGCGCCAGGCCGACAACCTCCAGCCGCTGCTGGAGGAAAACCACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATgc < 4:95524/137‑1 (MQ=255) ggcgATAGCGCATAGCTTTTGG‑CGGGTTTGGGCTATATTGCGTGGTTAACCCGGCGCCTGGCCGACAAACTGCCGCCGCTGCGGGCGAAAATCCACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATgcgcg < 6:71809/137‑1 (MQ=255) ggcgAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATgcgcg < 5:273034/137‑1 (MQ=255) gagaTCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCaa > 4:58979/1‑137 (MQ=255) agaTCGCCAAGCGTTTTG‑CGGGTGAGGGCTATATTGCGTGCGTACCCCGGCGCCAGGCCTACAAACTCCAGCCGCTGCTGGAGTAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAg < 5:252848/137‑1 (MQ=255) taTCGCAAAGCTTTTTG‑CGGGTGAGGCCTATATTGCGTGGGTAACCCGGCGCCAGGCCGACAAACTGCAGCCGCTGCTGGTGTAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAgg < 8:336018/136‑1 (MQ=255) tgg‑cgcTTGTGGGATATATTGCCTGCTAAACCGGTCGCACGGCAGAAAAACGCCCGCGGGGGCGGCACTAAAAACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGcc < 5:9785/135‑1 (MQ=255) tgg‑cgcGTGAGGGATATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCCGCCGCGGCTGGAGTAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGcc < 8:196285/135‑1 (MQ=255) tG‑CGCGTGAGGGATATATTGCCTGCGTAACCCGTCGCCAGGCCCAAAAACTGCAGCCGCTGCTGGAGTAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCg < 1:31118/137‑1 (MQ=255) ggggAGGTCTATATTGCCTGCTTAACCCGCCGCCAGGCAGAAAAACTCCAGCCGCTGCGGCAGTAAATACACGCCGCTGGCGGCCAGGCCTACGGGTTTGTCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACt < 2:23981/134‑1 (MQ=255) ggTGCGGGCTATATTCCCGGCGTAACCCGGCGCCAGCCCTAAAAACTGCACCCGCGGCTGGAGTAAAAACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACt < 6:92500/136‑1 (MQ=255) ggTGAGGGATATATTGCCGGGGAACCCCGTCGCCAGGCCTAAAAACTGCAGCCGCTGCTGGACTAAAACCACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACt < 3:345138/136‑1 (MQ=255) atatTGCGTGCGAAACCGGGCCCCCGGCCGAAAAACTGCCGCCGCTGTTGTAGTAAAACCACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACt < 5:55687/137‑1 (MQ=255) ttGCCTGCGTAACCCGGCGCCAGGCCTACAAACTGCAGCCGCTGCTGGAGTAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATc < 6:132245/137‑1 (MQ=255) ttGCCTGCGTAACCCGGCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATc < 2:16235/137‑1 (MQ=255) ttGCCTGCGAAACCCGTCGCCCGGCAGAAAAACGCCCGCCGCGGCTGGAGTAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGACGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATc < 1:191646/137‑1 (MQ=255) gCCTGCTTAACCCGTGGCCAGGCCGACAAACTGCAGCCGCTGCTTGTGTAAATCCACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGa < 6:184385/137‑1 (MQ=255) gCCTGCGTAACCCGTCGCCAGGCCTAAAAACTGCAGCCGCTGCTGTAGTAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGa < 7:8288/137‑1 (MQ=255) gCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGa < 5:136685/137‑1 (MQ=255) gCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGGGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCGt > 3:337400/1‑137 (MQ=255) gCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCGt > 7:5161/1‑137 (MQ=255) gTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCGTGa > 3:90638/1‑137 (MQ=255) tAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCGTGat > 1:57742/1‑137 (MQ=255) tAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCGTGat > 8:299473/1‑137 (MQ=255) ccGTCGCAAGGCCGAAAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCGTGATATAg < 6:65053/137‑1 (MQ=255) ccGGCGCCCGGCCGACAAAGTGACGCCGCTGCGGGCGCAAAAACACGCCGCGGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCGTGATATAg < 8:147324/137‑1 (MQ=255) | ACCAATGGAGGCAGGCATGTCAGAACAACAAAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAAGCGTTTTG‑CGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCGTGATATAG > ACB143/3273743‑3273999 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |