New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	= 1837193	1 (0.010)	41 (0.540)	31/252	1.0	51.3%	coding (657/2754 nt)	barA	Signal transduction histidine‑protein kinaseBarA
	?	ACB143	2170759 =	77 (1.010)					intergenic (‑774/‑63)	arsR1/CJ019_02060	Arsenic resistance transcriptional regulatorArsR1/IS1182 family transposase ISPpu16

GATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/1837055‑1837193 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCA  >  ACB143/2170759‑2170894                                                                                                                                                                                                                                                                                     GATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTAGATTCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGG                                                                                                                                            >  5:410973/1‑137    GGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCC                                                                                                                                         <  6:325148/137‑1       TTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGGTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGA                                                                                                                                      <  1:258983/137‑1             GTTCGGGCGCAGGTCTTCGGGGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGT                                                                                                                                <  8:369358/137‑1                   GCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCC                                                                                                                                         >  1:28388/1‑122                   GCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCC                                                                                                                                         <  2:28388/122‑1                       ACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCC                                                                                                                      <  8:365934/137‑1                                      TGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCCCGGTTGTCTAACCT                                                                                                       >  6:329865/1‑137                                         TCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGGTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCT                                                                                                    <  4:244357/137‑1                                           GATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTGTAACCTTCTGG                                                                                                  >  7:191395/1‑137                                                TGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTC                                                                                             >  8:132383/1‑137                                                          ttaTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGG                                                                                   <  5:162927/134‑1                                                          tgCTTGGTGGGCTTTCTGCAGTGTTTCGTCGATGGGGTTGATGCGGTGGGCGTGTTCGTCCTGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGG                                                                                   <  6:69811/135‑1                                                          TTCTTCCTGGGCATTCTGCAGGGTTTCGCCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTGCAGAATGAGTGAAAACGCCCGCGCTTGTCTAACCTTCTGGACGTCCTGCCGGTGG                                                                                   >  4:32299/1‑137                                                             TTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGg                                                                                >  3:440373/1‑136                                                               CGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGTTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACA                                                                              >  7:208089/1‑137                                                                       TTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAACCATGAA                                                                      >  4:104598/1‑137                                                                        tctcgAGGGTTTCGGCCATGCGGGTTATGGCGTGGGCCAGTGCGGCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCGCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAG                                                                     <  6:481703/132‑1                                                                        TCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAG                                                                     <  7:132383/137‑1                                                                                  TTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCG                                                           >  2:150738/1‑137                                                                                    CGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATTGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAAACTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAA                                                         >  2:15814/1‑137                                                                                      GCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGG                                                       <  1:321327/137‑1                                                                                       CCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTC                                                                                             >  3:431616/1‑98                                                                                       CCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTC                                                                                             <  4:431616/98‑1                                                                                           GCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGG                                                  <  8:108922/137‑1                                                                                              GTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTC                                               >  1:409873/1‑137                                                                                                TGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATCAAGCGATTCATCGAAGGTGAGGCTCGA                                             <  7:8080/137‑1                                                                                                 GATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAA                                            <  4:54225/137‑1                                                                                                       GTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTATGGTCGTCGTGACCCTGGGGACAATAATGAAGCGATTAATCGAAGGTGAGGCTCGAAAGCAGG                                      >  3:265135/1‑137                                                                                                          GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGCGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTA                                   >  6:307212/1‑137                                                                                                          GGCCAGTTCGTCCAGCTCAGGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGTGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTA                                   <  8:161409/137‑1                                                                                                           GCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGAGAATCATGAAGCGATTAATCGAAGGTGAGGCTCGAACGCAGGTTAa                                  >  6:363879/1‑136                                                                                                                       AGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGAGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGATCGCACGCAGGTTACATTGCTGCCGGA                      >  1:70509/1‑137                                                                                                                            ATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCC                 >  2:362991/1‑137                                                                                                                            ATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTA                                   <  8:428243/119‑1                                                                                                                            ATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTA                                   >  7:428243/1‑119                                                                                                                                      ATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTACCCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTA       >  2:52729/1‑137                                                                                                                                      ATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTA       >  2:210012/1‑137                                                                                                                                      ATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGAGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTA       >  1:4609/1‑137                                                                                                                                      ATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGG                                                                                   >  7:401926/1‑61                                                                                                                                      ATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGG                                                                                   <  8:401926/61‑1                                                                                                                                      ATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTATGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGAGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTA       >  7:273940/1‑137                                                                                                                                        GGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACG     <  1:150738/137‑1                                                                                                                                          gCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTC   <  4:231164/136‑1                                                                                                                                          TCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTC   <  2:409873/137‑1                                                                                                                                           CCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCA  >  7:275062/1‑137                                                                                                                                           CCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCA  >  5:87073/1‑137                                                                                                                                                                                                                                                                                     GATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/1837055‑1837193 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCA  >  ACB143/2170759‑2170894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.