New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	1731043 =	73 (1.220)	12 (0.230)	10/228	2.9	17.2%	coding (110/426 nt)	spxA	Regulatory protein Spx
	?	ACB143	= 1770457	52 (1.000)					intergenic (+135/+157)	CJ019_01684/higA‑1	hypothetical protein/Antitoxin HigA‑1
Rejected: Frequency below/above cutoff threshold.

GATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/1731189‑1731043 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacggcatcaaagcctgGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGG  <  ACB143/1770457‑1770328                                                                                                                                                                                                                                                                                       GATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGAGTTACACTCTTTACGG                                                                                                                                                >  6:8465/1‑135    CTATACCGTGCCAGCCGTGGAGCTGAGTGTATCGATGTCGAATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTGTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATC                                                                                                                                            <  8:345974/136‑1       TACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATC                                                                                                                                            <  5:349600/133‑1       TACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCA                                                                                                                                              <  1:319523/131‑1       TACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCA                                                                                                                                              <  7:296642/131‑1       TACCGTGACAGACGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGTAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGC                                                                                                                                               <  8:29657/130‑1          CGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCC                                                                                                                                      >  1:316909/1‑136          CGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCC                                                                                                                                      <  1:78917/136‑1            TGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTG                                                                                                                                    <  7:82857/136‑1             GACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGG                                                                                                                                   >  6:215081/1‑136               CAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTTGGA                                                                                                                                 >  8:71898/1‑136               CAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGA                                                                                                                                 >  3:193785/1‑136                AGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGCGAC                                                                                                                                >  6:256269/1‑136                                   TCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAA                                                                                                             <  6:276160/136‑1                                     GATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAG                                                                                                           >  4:95413/1‑136                                               AATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAA                                                                                                 >  2:362724/1‑136                                                ATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAAT                                                                                                <  6:350076/136‑1                                                          TAATTTTTGGGAGATATTGGGGAGGTTTTTGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTA                                                                                      <  2:255857/136‑1                                                            ATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAA                                                                                     <  1:362724/135‑1                                                                          TTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGC                                                                                                                                               >  2:232411/1‑63                                                                          TTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGC                                                                                                                                               <  1:232411/63‑1                                                                                     TTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCG                                                           >  2:309434/1‑136                                                                                                                  CAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAG                               <  4:193785/135‑1                                                                                                                                    ACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATG            >  2:111992/1‑136                                                                                                                                    ACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATG            >  5:221919/1‑136                                                                                                                                     CGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGAT             <  1:17196/134‑1                                                                                                                                      GGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCA          >  6:91536/1‑136                                                                                                                                      GGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCA          >  4:63120/1‑136                                                                                                                                      GGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAAGTGAGCCTTTTTTGTTCTTTTCGACCCCAATATAATCAGGTGTTGACGGATGCA          >  7:24873/1‑136                                                                                                                                      GGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAA                                                                                                             <  4:56150/37‑1                                                                                                                                      GGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAA                                                                                                             >  3:56150/1‑37                                                                                                                                       GCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCAT         >  2:9785/1‑136                                                                                                                                           CAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTG     >  7:269336/1‑136                                                                                                                                            AAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGG    >  2:176675/1‑136                                                                                                                                            AAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTG     <  5:129723/135‑1                                                                                                                                            AAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTG     <  1:284877/135‑1                                                                                                                                              AGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGG   >  7:266241/1‑135                                                                                                                                              AGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGG   >  1:304781/1‑135                                                                                                                                              AGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGG   >  8:141691/1‑135                                                                                                                                              AGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGG   >  5:227701/1‑135                                                                                                                                              AGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGG   >  3:156735/1‑135                                                                                                                                              AGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGG   >  4:74901/1‑135                                                                                                                                              AGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGACTTAAAGCAAATATGGCGCATCGGAAATGCGCCTTTTTTCTACGTTTCGACCCCAATAGAATCAGGTCTTTACGGATGCATTTTGGG   >  8:250045/1‑135                                                                                                                                                CCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGG  >  4:182793/1‑134                                                                                                                                                CCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGG  >  1:190320/1‑134                                                                                                                                                                                                                                                                                       GATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/1731189‑1731043 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacggcatcaaagcctgGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGG  <  ACB143/1770457‑1770328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.