New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1391495	NA (NA)	32 (0.780)	24/290	0.9	94.1%	intergenic (+146/‑127)	insH1/ynaJ	IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein
	?	CP009273	= 2083419	2 (0.050)					intergenic (‑225/‑58)	yefM/hisL	antitoxin of the YoeB‑YefM toxin‑antitoxin system/his operon leader peptide

AAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1391348‑1391495 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGAGCGGGGAAAGGAGGGGGCTAAGAGGACTGTCCTCTTAGCTGATGGCACCAAAAATAGCGAAGCCTGGATTTTCGTCTCACTGACAATACC  <  CP009273/2083419‑2083273                                                                                                                                                                                                                                                                                                         AAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT                                                                                                                                                    <  2:520981/149‑1        GGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCAAAAACAAAAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTT                                                                                                                                                   <  1:428434/143‑1         GGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGCGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTA                                                                                                                                                  >  1:342617/1‑143               ACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGC                                                                                                                                      >  2:314500/1‑149                       aagGGCGAAGAAACGGGCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACCGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTT                                                                                                                                    <  1:223736/140‑1                           GCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATCTAT                                                                                                                          >  2:44938/1‑149                               ataatCGGTCTCAGTAGGCCGATTCAAGGATTTTACGGGAGAACCAACCGGCTCAAACATGAAGAAATGAACTGACTGCGTCAGCCGAGAAGACTTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATAT                                                                                                                            <  1:329327/138‑1                                        CTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGG                                                                                                                   <  1:373655/143‑1                                                GCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTT                                                                                                     >  2:175607/1‑149                                                GCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCACGGCTTACTAGTACACTGCCGATATAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTT                                                                                                     >  2:310339/1‑149                                                  tgcTTCAAGTCATTTACGGGAGAAAAAACTGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGTACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAA                                                                                                   <  2:247688/146‑1                                                  TGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAA                                                                                                   <  2:247691/149‑1                                                     TTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGACTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTT                                                                                                      <  1:257779/143‑1                                                      TCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAA                                                                                               >  2:117975/1‑149                                                        AAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCCAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAA                                                                                                   >  1:315688/1‑143                                                        AAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATG                                                                                             >  2:524011/1‑149                                                              ttcACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGAGCGGG                                                                                       <  2:249355/146‑1                                                              TTTACGAGAAAAAAAATCGCCTCAAACATGAAAAAATGAAAAGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGAGCGGG                                                                                       <  2:249497/149‑1                                                                        AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATCATTTATGACAATGACTTTGTTTAATGAAcggacgggtgat                                                                                   >  1:605824/1‑131                                                                         AAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCAGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGAGGGGGGAGAG                                                                                  >  1:283223/1‑143                                                                           AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTGGTTTAATGAATGAGTGGGGAAAGGAGGGGGC                                                                          >  2:469416/1‑149                                                                           AAAACGGCTCAAACATGAAGAAATGACATGACGGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTGCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGAGCGGGGAAAGGA                                                                                <  1:49166/143‑1                                                                                            AAGAAACGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGAGCGGGGAAAGGAGGGGGCTAAGAGGACTGTCCTCT                                                         <  2:312423/149‑1                                                                                               AAAAGAAAGGACTGTGTCAGCCGAGAACAATTTCCCCGCTTATTCGCTCCTTCCTTAGAAAGCAAGGGCTTTTTGATCTATTTTATCGCAATGGATTTGTTTAACGAATGCGCGGGGAAAGGAGGGGGCTAAGAGGACTGTCCTCTTAG                                                      <  2:78435/149‑1                                                                                                    AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGAGCGGGGAAAGGAGGGGGCTAAGAGGACTGTCCTCTTAGCTGAT                                                 <  2:413497/149‑1                                                                                                      ATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGAGCGGGGAAAGGAGGGGGCTAAGAGGACTGTCCTCTTAGCTGCTGG                                               >  2:332493/1‑149                                                                                                                          gacgTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGCGCGGGGAAAGGAGGGGGCTAAGAGGACTGTCCTCTTAGCTGATGGCACCAAAAATAGCGAAGCCT                           <  2:31987/145‑1                                                                                                                          GAATTTCCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGAGCGGGGAAAGGAGGGGGCTAAGAGGACTGTCCTCTTAGCTGATGGCACCAAAAATAGCG                                 >  1:402478/1‑143                                                                                                                                CCCCGCTTATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGAGCGGGGAAAGGAGGGGGCTAAGAGGACTGTCCTCTTAGCTGATGGCACCAAAAATAGCGAAGCCTGGATTT                     <  2:680153/149‑1                                                                                                                                        ATTCGCACCTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGAGCGGGGAAAGGAGGGGGCTAAGAGGACTGTCCTCTTAGCTGATGGCACCAAAAATAGCGAAGCCTGGATTTTC                   <  1:39961/143‑1                                                                                                                                                CTTCCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGAGCGGGGAAAGGAGGGGGCTAAGAGGACTGTCCTCTTAGCTGATGGCACCAAAAATAGCGAAGCCTGGATTTTCGTCTCACT           >  1:356997/1‑143                                                                                                                                                   CCTTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGAGCGGGGAAAGGAGGGGGCTAAGAGGACTGTCCTCTTAGCTGATGGCACCAAAAATAGCGAAGCCTGGATTTTCGTCTCACTGACAATACC  >  2:534734/1‑149                                                                                                                                                                                                                                                                                                         AAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1391348‑1391495 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGAAAGCAAGGGCTTTTTTATATATTTTATGGCAATGGATTTGTTTAATGAATGAGCGGGGAAAGGAGGGGGCTAAGAGGACTGTCCTCTTAGCTGATGGCACCAAAAATAGCGAAGCCTGGATTTTCGTCTCACTGACAATACC  <  CP009273/2083419‑2083273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.