New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1422521	NA (NA)	14 (0.360)	3/278	5.9	100%	noncoding (531/1196 nt)	IS5	repeat region
	?	CP009273	= 2060347	0 (0.000)					noncoding (488/1195 nt)	IS5	repeat region
Rejected: Coverage evenness skew score above cutoff.

CCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGAAAT  >  CP009273/1422392‑1422664                                                                                                                                  |                                                                                                                                                ccGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTg                                                                                                                                    >  1:477504/1‑143 (MQ=32)    cgGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCa                                                                                                                           >  2:673786/1‑149 (MQ=32)       tggtgACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCGAGGTGCCTCAatg                                                                                                                        >  2:204349/1‑149 (MQ=17)        ggggACCAGGCGGTGGGTCACGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGGGCCACTGATTGCCTTTCTTGGGCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAatga                                                                                                                       <  2:129416/146‑1 (MQ=11)            aCCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAtggt                                                                                                                   <  2:419706/149‑1 (MQ=32)            aCCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACGGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATCAtggt                                                                                                                   >  2:265442/1‑149 (MQ=17)                     tgGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTCCATGCCAAAGTGCCACTGATTGCCTGGCGGGGGCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGc                                                                                                                >  1:136051/1‑143 (MQ=11)                       ggTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCCCTTAGTCCCTGGTAGAGCTGGGTGCCTCAATGGTGGTTGCac                                                                                                              >  1:280784/1‑142 (MQ=11)                           aGGCCACTCTTAGCATCGACACCAATGTGGGCCTTCATGCCAAGGTGCCACTGATTGCCTATCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCGGGGCGCGTCGATGATGGTGGCTTCCACGCAAGt                                                                                                    >  2:25738/1‑149 (MQ=11)                                tctctTGGTATCGTCGCTTATGTGGGTTTTCTTGCCAACGTGCCGCTGATTGCCGTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCtt                                                                                               <  2:248724/148‑1 (MQ=11)                                  tctTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCCCTGCTTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTg                                                                                                   >  1:106724/1‑143 (MQ=255)                                  tctTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACCGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGGGCTGGGGGCCTCAATGATGGTGGCATCCCCCAAAGTGCCTTgg                                                                                             >  2:343362/1‑149 (MQ=255)                                   cttggcggggACAGCGATGTGGGGCTTCGTGCCGATGGGGCAGTGAGTGCCTGTCTTGGTCTGATGCGTCGCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTggg                                                                                            <  2:97239/140‑1 (MQ=14)                                    ttGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGt                                                                                           <  2:591600/149‑1 (MQ=255)                                     tGGCGTCGACACCGATGTGGGCCTTCATGCCAAGGTGCCACTGATTGCCTTACGTGCTCGGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGtc                                                                                          <  2:372102/149‑1 (MQ=14)                                     tGGCATCGAACTTAATTTGGTCCTTTGTGCCATATTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGtc                                                                                          <  2:191571/149‑1 (MQ=14)                                               acCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCAGTGGGtcatca                                                                                      >  1:256725/1‑143 (MQ=255)                                                ccAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGGGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTcatcat                                                                                     <  1:617865/143‑1 (MQ=255)                                                       gggCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCt                                                                              <  1:587420/143‑1 (MQ=255)                                                       gggCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCg                                                                        <  2:40787/149‑1 (MQ=255)                                                          ccTTCATGCCAAAGGTCCACTTATTGCCTTTTTTGGTCTGATGCATATCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGCGCTGGGTGCCTCAATGATGGTGGCATCCACCTAAGTGCTTTGGGTCATCATGACGCCTGCt                                                                           <  1:319388/143‑1 (MQ=14)                                                             tCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGgccagc                                                                  <  2:289222/149‑1 (MQ=255)                                                               aTGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGgc                                                                      >  1:430209/1‑143 (MQ=40)                                                                tGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGccagccag                                                               >  2:204010/1‑149 (MQ=40)                                                                 gCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGTGAGTGTCATCCACCAAAGTGCCTTGGGTCCTCATGACGCCTGCTTCGgccc                                                                    >  1:226613/1‑142 (MQ=14)                                                                   cAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGgccagc                                                                  >  1:466397/1‑143 (MQ=40)                                                                   cAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGa                                                            >  2:351816/1‑149 (MQ=255)                                                                         gCCTCTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATCGTGGCATCCCCCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATg                                                      <  2:632523/149‑1 (MQ=255)                                                                         gCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTCCGGCCAGGCAGCGa                                                            >  1:131209/1‑143 (MQ=255)                                                                              tGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCtt                                                 <  2:566673/149‑1 (MQ=40)                                                                               gATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATg                                                      <  1:411340/143‑1 (MQ=255)                                                                                  tGCCTTTCTTGGTCTTATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGCGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAAc                                             <  2:476016/149‑1 (MQ=255)                                                                                      tttCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGa                                               >  1:625669/1‑143 (MQ=255)                                                                                      tttCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGACTGCTTCGGCCAGCCAGCGATTGATGGTCTTGa                                               >  1:323797/1‑143 (MQ=255)                                                                                      tttCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATCGTGGCCTCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGa                                               >  1:156873/1‑143 (MQ=255)                                                                                      tttCTTGGTCTGATGCATCCCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGa                                               <  1:477084/143‑1 (MQ=255)                                                                                            ggTCTGATGCATCTCCGGATCGCGTTGCTACTCGGTGAGCGTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACggg                                   >  2:518830/1‑149 (MQ=14)                                                                                                 gATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTTGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACgg                                    >  1:371243/1‑143 (MQ=255)                                                                                                  aTGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGtt                             >  2:374489/1‑149 (MQ=255)                                                                                                  aTGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGtt                             <  2:568184/149‑1 (MQ=255)                                                                                                          ccGGATCGCGTTGGTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTgg                           <  1:60650/143‑2 (MQ=255)                                                                                                          ccGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGAtgctgc                     <  2:681886/149‑1 (MQ=255)                                                                                                            ggATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCGAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTc                   <  2:314218/149‑1 (MQ=255)                                                                                                                cgcgTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGc               <  2:150161/149‑1 (MQ=255)                                                                                                                      gctgctCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGc               <  1:508237/143‑1 (MQ=255)                                                                                                                      gctgctCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTATTGAACAATTTAGTGGCCAGTTGATGCTGCTCGAGCAGGTgg         >  2:306828/1‑149 (MQ=255)                                                                                                                       ctgctCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGGGCAGGTGGc        >  2:221425/1‑149 (MQ=255)                                                                                                                         gctCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAgg            <  1:529089/143‑1 (MQ=255)                                                                                                                             tttGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGAAAt  <  2:463895/149‑1 (MQ=255)                                                                                                                                  |                                                                                                                                                CCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGAAAT  >  CP009273/1422392‑1422664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.