New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4098499 =	NA (NA)	3 (0.080)	3/276	5.8	NA	noncoding (1/98 nt)	RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	4098524 =	NA (NA)					noncoding (26/98 nt)	RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

CACGACATCATCGACGCTATCGAAAACATGAAGCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCC  >  CP009273/4098362‑4098644                                                                                                                                          |                                                                                                                                                  cacGACATCATCGACGCTATCGAAAACATGAAGCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGCCAGAAGCAAAAATGCCTGa                                                                                                                                              >  1:309836/1‑143 (MQ=255) cacGACATCATCGACGCTATCGAAAACATGAAGCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGcgct                                                                                                                                        >  2:373738/1‑149 (MQ=255)    gACATCATCGACGCTATCGAAAACAGGAAGCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAACAAGGCAGATTCCTTTACCCTGAAACCGATGAAAGAAGCAAACATGACTGATGcgcttcg                                                                                                                                     >  2:353198/1‑149 (MQ=255)          atcGACGCTATCGAAAACATGAAGCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAAATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAAAGCCTGATGCGCTTCGCTTATc                                                                                                                               >  2:47250/1‑149 (MQ=255)            cGACGCTATCGAAAACATGAAGCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTGATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGcgcttcgct                                                                                                                                   >  1:355340/1‑143 (MQ=255)                    tCGAAAACATGAAGCGTCCGTAAAAAGATGACTGGAAGGACTGCGCGATAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGc                                                                                                                           >  1:441484/1‑143 (MQ=255)                       aaaaCATGAAGCCTCCGTTCAAAGGTGACTGGCTGGAGTGCGCGAAAACACTGCACTAATAATAACCGAAAAAGGCAGATTCCTTTACCCTGAAACAAAAAAAAAAAAAAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTa                                                                                                                        <  1:79612/143‑1 (MQ=255)                               aaGCGTCCGTTCAACGGTCGCTGGCTTGACTGCGTGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAAtt                                                                                                                <  1:359422/143‑1 (MQ=39)                                 gCGTCCGTTCAATGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCTCTTCGCTTATCAGGCCTACATGAATTCt                                                                                                              <  1:18402/143‑1 (MQ=255)                                 gCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGACTAGTGCTCTACGCTTATCAGGCCTACATGAATTCTGCAAtt                                                                                                        >  2:478461/1‑149 (MQ=255)                                 gCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGAAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAAAAGAAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCt                                                                                                              <  1:18233/143‑1 (MQ=255)                                     cccttCACAGGTGACTGGCTGGACCGCGCGAAAAAACTGTCTTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATAACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCaa                                                                                                          <  1:408454/140‑1 (MQ=39)                                        ttCAAAGGTGACTGGCTGGACTGCGAGAAATCAATATGTTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTCaa                                                                                                 >  2:695254/1‑149 (MQ=38)                                           aaaGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTAtt                                                                                                    >  1:333992/1‑143 (MQ=255)                                               gTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCaa                                                                                          >  2:468442/1‑149 (MQ=255)                                               gTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCaa                                                                                          >  2:4616/1‑149 (MQ=255)                                                 gACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAAc                                                                                        <  2:130138/149‑1 (MQ=255)                                                      gctggACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTg                                                                                   >  2:679468/1‑149 (MQ=255)                                                        tggACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAAGGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGtg                                                                                 <  2:274437/149‑2 (MQ=255)                                                         ggACTGCGCGAAAAAACTGTATCAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAg                                                                                <  2:130273/149‑1 (MQ=255)                                                           aCTGCGCGAAAAAACTGTAGTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGc                                                                              <  2:325714/149‑1 (MQ=255)                                                               cgcgAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAg                                                                                >  1:641777/1‑143 (MQ=255)                                                                          tGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAACTTATTGAATTTGCAAACTTTAGTAGGCCGGATAAgg                                                                     >  1:15951/1‑143 (MQ=255)                                                                              ttAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAGCGGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGtt                                                                 >  1:484043/1‑143 (MQ=255)                                                                                aaTGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGACTACATGAATTCTGCACTTTATTGAATTTGCAAACTTTAATAGGCCAGGTAAAGCGGTcg                                                               >  1:606274/1‑143 (MQ=37)                                                                                 aTGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCATGACTACATGCATTCTGTAACGCATTGCATTTGCAAACTTTTGTAGACCGGATAAGGCGTTCGCGCCGCa                                                        >  2:134699/1‑149 (MQ=37)                                                                                                 gCAGATTCCTCTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATgg                                              <  1:440307/143‑1 (MQ=255)                                                                                                     atcccTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGAGGCGCTTCGCTTAGCAGGCTTACATGAACTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACaa                                          <  1:5304/140‑1 (MQ=25)                                                                                                     aTTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACaa                                          >  1:111510/1‑143 (MQ=255)                                                                                                       tCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACt                                  <  2:259805/149‑1 (MQ=255)                                                                                                         cTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCGTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAgcg                                      >  1:414247/1‑143 (MQ=255)                                                                                                          tttCCCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAgcgc                                     <  1:562999/143‑1 (MQ=255)                                                                                                            tACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGTGCGCTTTGTc                             <  2:532087/149‑1 (MQ=255)                                                                                                             aCCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCa                            <  2:123005/149‑1 (MQ=255)                                                                                                                 tGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGt                              >  1:516147/1‑143 (MQ=255)                                                                                                                     aCCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGACATGGACAAAGCGCACTTTGTCAGCACTATg                    >  2:530005/1‑149 (MQ=255)                                                                                                                          tGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAatat                     >  1:175800/1‑143 (MQ=255)                                                                                                                          tGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCg               >  2:122672/1‑149 (MQ=255)                                                                                                                                aaGCAAAAATGCCTGATGCGCTTCGCTTCTCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAGACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATttc         >  2:424908/1‑149 (MQ=255)                                                                                                                                    aaaaaTGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTcc     <  2:373953/149‑1 (MQ=255)                                                                                                                                     aaaaTGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGAttt          >  1:391590/1‑143 (MQ=255)                                                                                                                                       aaTGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGcc  >  2:670122/1‑149 (MQ=255)                                                                                                                                         tGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATttcttc      <  1:89099/143‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                  CACGACATCATCGACGCTATCGAAAACATGAAGCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCC  >  CP009273/4098362‑4098644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.