New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1884990 =	38 (0.930)	4 (0.100)	4/284	5.4	9.3%	coding (535/696 nt)	tsaB	tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD
	?	CP009273	1885016 =	41 (1.030)					coding (509/696 nt)	tsaB	tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCA  >  CP009273/1884870‑1885155                                                                                                                                                   |                                                                                                                                            gTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCCGCATATCTTCAGCAGCAGGCAGTCACACTTCGCCATCGCGCAAACCCAGCCCGCTCTCTTTACCGCGATCCGGCCaa                                                                                                                                           >  2:276908/1‑149 (MQ=255) gTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGAACCGGccca                                                                                                                                           >  2:260451/1‑147 (MQ=255)      taaaCCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATAGCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTGCCCGGGCGCGGGCCAAGCttc                                                                                                                                      >  2:296827/1‑148 (MQ=255)          ccGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAg                                                                                                                                  <  2:298843/149‑1 (MQ=255)           cGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTCCCGGGATCCGGCCGAGCTTGCCGGc                                                                                                                                 >  2:180274/1‑149 (MQ=255)             gTTCGGCATGTTCCACCGCCCCCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGc                                                                                                                                     <  1:111027/143‑1 (MQ=255)               tCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCa                                                                                                                                   <  1:82491/143‑1 (MQ=255)                         ccaccgccaccgTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGCGATCCGGCCAAGCTTGCCCTCCCGTCCCTACCGTc                                                                                                                   >  2:208033/1‑149 (MQ=255)                                 accgTTTTACCCTCAGCAACCATCTGACACGCACACGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCAc                                                                                                                 <  1:347330/143‑1 (MQ=255)                                 accgTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTCCCGTCAc                                                                                                                 >  1:639360/1‑143 (MQ=255)                                 accgTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCAc                                                                                                                 >  1:130040/1‑143 (MQ=255)                                                               gCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGGAAGCTGTTGCATTCGTTc                                                                                   >  1:555688/1‑143 (MQ=255)                                                                 aaTCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGa                                                                           >  2:485480/1‑149 (MQ=255)                                                                 aaTCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGa                                                                           >  2:184589/1‑149 (MQ=255)                                                                      acagcaTATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCg                                                                      <  2:696096/148‑1 (MQ=255)                                                                             atCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCgg                                                                     >  1:86817/1‑143 (MQ=255)                                                                              tCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCCGTTGCATTCGTTCATCGACGATTCCgcg                                                                    >  1:131544/1‑141 (MQ=255)                                                                               ctccagcagcagGCAGTAACACTTCCCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGt                                                                   <  1:402682/140‑1 (MQ=255)                                                                                    gcagcagGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGc                                                        >  2:332673/1‑149 (MQ=255)                                                                                     cagcagGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGt                                                             >  1:598387/1‑143 (MQ=255)                                                                                      agcagGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGGCCCTACCGCCACCCATTCGCCGGAAACGTGTTGCATTCGTTCCGGGACGCTTTCggcgctgacgc                                                            >  1:85172/1‑134 (MQ=255)                                                                                        caggcagTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCg                                                    >  2:580108/1‑149 (MQ=255)                                                                                          ggcagTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGt                                                  >  2:234178/1‑149 (MQ=255)                                                                                             agTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCCACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCCTGGCCGATTTCGGGTTTGAGTCCGGCTTc                                                     >  1:152122/1‑143 (MQ=255)                                                                                                         ccATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGACCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCAcc                                         >  1:394625/1‑143 (MQ=255)                                                                                                           aTCGCGCAAAACCAGCCCGCTTTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGa                                 <  2:577668/149‑1 (MQ=255)                                                                                                             cgcgCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTAGCTAGCATGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGCGTGCGGCTTTGGTTTCTTCACCGTGccggtta                               >  2:314513/1‑144 (MQ=255)                                                                                                               cgcAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCGGATAcc                             >  2:133281/1‑149 (MQ=255)                                                                                                                gcAAACCCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCACTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTAAGGGACGATTTCGAGAGTGAGTACGCCTTCGGTTTCTTCCCCGTGccgg                                  >  1:218483/1‑141 (MQ=255)                                                                                                                     aCCAGCCCGCTCCCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTtc                       <  2:143411/149‑1 (MQ=255)                                                                                                                      ccAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCGGCTACCg                            >  1:208208/1‑143 (MQ=255)                                                                                                                       cAGCCCGCTCTCTGCACCGAGATACGGCCAAGCTTGCCAGCCCGTCACTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTtcat                     <  2:50251/149‑1 (MQ=255)                                                                                                                        aGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGCCGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAAAAACCGTTTtcatc                    >  2:33799/1‑149 (MQ=255)                                                                                                                               tcgctTTACCGGGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTtcatca                   <  1:319269/140‑1 (MQ=255)                                                                                                                               tccctTTACCGCGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTtcatca                   <  1:344971/140‑1 (MQ=255)                                                                                                                                 gctgtcccgtgctCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACg                 <  1:247892/131‑1 (MQ=255)                                                                                                                                        cGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCGTTCGTTCGTGGACGAATTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCGCGCTGgtat          >  1:300040/1‑143 (MQ=255)                                                                                                                                        cGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGcc    >  2:582202/1‑149 (MQ=255)                                                                                                                                        cGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGACGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCCTCGGTTTCTTCCCCGTGCCCGATCCCCCTTTCATCACGCTGatat          >  1:278666/1‑143 (MQ=255)                                                                                                                                          agaTCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCa  <  2:695954/149‑1 (MQ=255)                                                                                                                                               cGGCCAAGCTTGCCAGCCCGTCCCTACCGAAAACTATTTTTTGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGcca   >  1:619996/1‑142 (MQ=255)                                                                                                                                                   |                                                                                                                                            GTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGCAAAACCAGCCCGCTCTCTTTACCGAGATCCGGCCAAGCTTGCCAGCCCGTCCCTACCGTCACCCATTCGCCGGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCA  >  CP009273/1884870‑1885155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.