New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2083416 =	3 (0.070)	52 (1.270)	47/290	0.0	94.5%	intergenic (‑222/‑61)	yefM/hisL	antitoxin of the YoeB‑YefM toxin‑antitoxin system/his operon leader peptide
	?	CP009273	= 2096424	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

GAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGT  >  CP009273/2096285‑2096570                                                                                                                                            |                                                                                                                                                   gAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCt                                                                                                                                           <  2:572830/149‑1 (MQ=32)      tctcTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGACTCCAGATGACAAACATGATCTCATCTCAGGGAGTTGTTCGCACCTTCCTTAATCCCTAACAt                                                                                                                                      <  2:457545/149‑1 (MQ=255)            ttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGa                                                                                                                                <  2:200406/149‑1 (MQ=255)                     gACGGCGCTTACTGCTGAAGTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATaaa                                                                                                                       <  2:537827/149‑1 (MQ=255)                         gcgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATa                                                                                                                         >  1:517731/1‑143 (MQ=255)                            cTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTATATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATaaaa                                                                                                                      <  1:313651/143‑1 (MQ=255)                             ttACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACGTGTTCGCACATTCCTTAATCCCTAACATAAATGACACAATAAAAt                                                                                                                     >  1:289439/1‑143 (MQ=255)                                 tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTCACATAAATGACACAATAAAATCAGAAAGcac                                                                                                           >  2:4382/1‑149 (MQ=255)                                     gAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGGTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGc                                                                                                             >  1:503168/1‑143 (MQ=255)                                              ttCGGCGATGGTAAGTTGATTACTCAGGATTATCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCTGGGACTTGTTCGCATCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGCAAGCACAGGAAAt                                                                                                    <  1:443044/142‑1 (MQ=18)                                                 ggCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACg                                                                                           >  2:555277/1‑149 (MQ=255)                                                  gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGTAAATTTTCTTACgg                                                                                          >  2:180655/1‑149 (MQ=255)                                                  gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTc                                                                                                <  1:433293/143‑1 (MQ=255)                                                                     tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTaa                                                                             >  1:425561/1‑143 (MQ=255)                                                                      cATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTaaa                                                                            >  1:344612/1‑143 (MQ=255)                                                                       atgatgAACCCTGTTCTATGACTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAg                                                                           >  1:624070/1‑143 (MQ=255)                                                                          atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGAtt                                                                        >  1:172975/1‑143 (MQ=255)                                                                            gaACCCTGTTCTATGGCTCCAGATGACAACCATGATCTCATATCAGGGCCTTGTTAGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCTGAAGGCACAGGAAATTTTATTACGGAATAATCATGTAAAgcactc                                                                      >  1:154225/1‑138 (MQ=25)                                                                                ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATACCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTAGCtt                                                                  >  1:51141/1‑143 (MQ=255)                                                                                  tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAACGATTTCGcatta                                                                >  1:189393/1‑139 (MQ=255)                                                                                   gTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCAt                                                               <  1:40782/143‑1 (MQ=255)                                                                                      cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTCCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACa                                                      >  2:549772/1‑149 (MQ=255)                                                                                       tATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAg                                                     <  2:42153/149‑1 (MQ=255)                                                                                           gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAAc                                                       <  1:397129/143‑1 (MQ=255)                                                                                             tCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATATTCATGTTAAGTTTTCGCTTCATCTAGGAACAGGCATaa                                               >  2:131154/1‑149 (MQ=255)                                                                                                    gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTGCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTa                                        <  2:493056/149‑1 (MQ=255)                                                                                                       aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGAAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTaaaa                                     >  2:360728/1‑149 (MQ=255)                                                                                                        aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTAc                                          >  1:563881/1‑143 (MQ=255)                                                                                                        aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAg                                    >  2:324845/1‑149 (MQ=255)                                                                                                                 tcATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCAt                                 <  1:63206/143‑1 (MQ=255)                                                                                                                 tcATATCAGGGACTTGTTCGCACCTTCCTTAATCCATAACATAAATGACACAATAAAATCAGAAAGCACAGGAGATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCAt                                 <  1:63113/143‑1 (MQ=255)                                                                                                                   atatCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAAAAAGGTTTATGAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTa                         <  2:509614/149‑1 (MQ=255)                                                                                                                        aGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCtt                          >  1:128466/1‑143 (MQ=255)                                                                                                                               tGTTCGCACCTGCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACatat             <  2:191352/149‑1 (MQ=255)                                                                                                                                  tCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTa          <  2:290494/149‑1 (MQ=255)                                                                                                                                     cACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGGACTAAAAGCATAACGCTTACTTTCGCCATATTTCata       >  2:61255/1‑149 (MQ=255)                                                                                                                                        cttccttAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAatatat    <  2:56803/149‑1 (MQ=255)                                                                                                                                         ttccttAATCCCTAACATAAATGACACAAGAAAATCAGAAAGCACAGGAAATTCTCTTACGAAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAACCATAACGATTACTTTCGCGATATTTAATATATg   >  2:430389/1‑149 (MQ=255)                                                                                                                                          tccttAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGt  >  2:158762/1‑149 (MQ=255)                                                                                                                                          tccttAATCCCAAACATAAATGACACAATAAAATCAGAAAGCACAGGAAAGTTTCTTACGGAATAAGCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACAAATTTAat        >  1:154718/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                                   GAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGT  >  CP009273/2096285‑2096570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.