| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP009273 | 3,360,110 | Δ10,684 bp | IS5‑mediated | [yhcE]–sspA | [yhcE], yhcF, yhcG, yhcH, nanK, nanE, nanT, nanA, nanR, dcuD, sspB, sspA |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 3359011–3360109 | 3370793 | 10685–11783 | 14 [13] | [0] 41 | insH1–sspA | insH1, yhcE, yhcF, yhcG, yhcH, nanK, nanE, nanT, nanA, nanR, dcuD, sspB, sspA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3360109 | NA (NA) | 41 (1.000) | 33/290 | 0.3 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 3370794 = | 0 (0.000) | intergenic (‑15/+380) | sspA/rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 | |||||
TTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTT > CP009273/3370646‑3370936 | cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcca < 2:77631‑M2/1‑1 (MQ=255) aaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAAt < 2:293653‑M2/11‑1 (MQ=255) tggtctgacggcgcttactgctggattcactgtcggcgaagggaagtggatgactcatgatgaaccctgttctatggctccagatgacaaacatgatcttatatcagggacttgttcgcaccttccATAGTCAGAATTTTTAc < 1:582395‑M2/17‑1 (MQ=255) ggtctgacggcgcttactgcttaattcactgtcggcgaaggtaagttgatgcctcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATCGTCAGAATTTTTACt < 1:177760‑M2/18‑1 (MQ=255) gacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTAc > 1:587623‑M2/121‑143 (MQ=255) acggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatttcagggacttgttcgcaccttccATAGTCTGAATTTTTACTGCTACCAGccac < 2:389440‑M2/30‑1 (MQ=255) tactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGc < 2:499663‑M2/38‑1 (MQ=255) actgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAg > 1:343039‑M2/111‑143 (MQ=255) actgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAg > 1:343112‑M2/111‑143 (MQ=255) ctgaattcactgtcggcgaaggaaagttgatgacgcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTACTACCAGCCACCAGGTgg > 1:387013‑M2/107‑143 (MQ=255) ttgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttctATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTtgt < 2:574649‑M2/52‑1 (MQ=255) ctgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctcccctcgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCACGTGGCCAGTCAGAAGTtgt < 2:511848‑M2/52‑1 (MQ=255) ctgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTtgt < 2:496781‑M2/52‑1 (MQ=255) tcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTAcc < 2:603575‑M2/58‑1 (MQ=255) gcgaagttaagttgctgtctcatgatgaaccctgttctatgcctccagctgtcaaacattatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTtgt < 1:607198‑M2/52‑1 (MQ=255) aaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCaa < 2:115948‑M2/61‑1 (MQ=255) aggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacaggacctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTCCTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTa < 1:368370‑M2/56‑1 (MQ=255) gtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTAcc < 1:519633‑M2/58‑1 (MQ=255) gtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATaa > 2:564854‑M2/86‑149 (MQ=255) taagttgctgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTAccc < 1:370953‑M2/59‑1 (MQ=255) aagttgatgactcctgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTAGTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTATTACCCAATAAgg < 2:504226‑M2/66‑1 (MQ=255) gttgatgacgcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGaa < 2:169770‑M2/68‑1 (MQ=255) gatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGTCACCAGCCACCCGGTGGCCAGTCAGAAGTTGTGTTACCCAATACGGAACGa > 2:545584‑M2/79‑149 (MQ=255) atgacacatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGACCGAc > 2:403154‑M2/78‑149 (MQ=255) tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGa > 1:87219‑M2/73‑143 (MQ=255) tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccctccGTTGTCAGAATTTTTACTGCTTCCAGCCACCAGGTGGCCAGTCAGAAGTCGTGTTACCCAATAAGGAACGActcgct > 2:191349‑M2/73‑149 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatccggggcttgtgcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCttt > 2:375791‑M2/71‑149 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGt < 2:96552‑M2/81‑1 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACGGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGaaa < 2:445250‑M2/87‑1 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCACCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGGACGACTCTCTTTGTTCgaaat > 2:284918‑M2/62‑148 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATc > 2:69089‑M2/60‑149 (MQ=255) tctatggccccagatgacaaacatgatctcatatcagggacgtgttcgcaccttccATAGGCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATcaaa < 2:31686‑M2/93‑1 (MQ=255) ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACaaaaaa > 2:611633‑M2/50‑149 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCATCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATcaaaca < 1:104701‑M2/95‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATTAGTAACGACTCTCTTCGTTCGAAAATCAAACAAAAAATGAGCAATAcc > 2:617402‑M2/39‑149 (MQ=255) tctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACAttt < 2:400619‑M2/119‑1 (MQ=255) tctcatatcagggacttgttcgcaccttccATAGTCAGAACTTTTACTGCTACAAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATAAGTAATaccca > 1:164037‑M2/31‑142 (MQ=255) ggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGTCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATGCCCGACATTTGGGCAGAAAAt > 2:488193‑M2/20‑149 (MQ=255) gttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGGGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAGATGAGCAATGCCCGACATTTGGCCCGAAAATTGgttg > 2:585208‑M2/14‑149 (MQ=255) cgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACTCGACATTTGGGCAGAAAATTGGATGATa < 2:377359‑M2/139‑1 (MQ=255) cattccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGttt > 2:286664‑M2/7‑149 (MQ=255) | TTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTT > CP009273/3370646‑3370936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |