| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 223539 | 43 (0.500) | 17 (0.200) | 7/276 | 11.4 | 29.0% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 4032152 | 42 (0.500) | noncoding (1274/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
AAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/223387‑223539‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgctTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACAT‑A‑GTGTCGCTGCCGCAGCTTCGGTGCATGGTTTAGCCCCGTTAC < CP009273/4032152‑4032009 AAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCC < 1:523603/149‑1 AACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGGATGAGCAGTGCGAAGGCTGCCGTAAGTAACGGTAAAGCGGGCGAAAGGCgc > 2:1020887/1‑147 GAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCCGGCTTACAGAACGCTCCCCTACCCAACAcagccaaagcc > 2:1380169/1‑138 GAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCAGGCTTACAGAACGCTCCCCTACCCAACAACGCAT‑Aagcg > 2:799794/1‑145 TGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATCCCTCCAGCCTGCCCCACCGCACACCTTCGCAGGCCTACAGAACGCCCCCCTCCCCCACAACGCAT‑Aaacgccgccg > 2:39647/1‑139 AAGTAACGATAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGC < 2:381646/79‑1 AAGTAACGATAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGC > 1:381646/1‑79 GATAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCAGGCTTACAGAACGCTCCCCTACCCAACAACGCAT‑AGGCGTCGCTGCCGCAGCTTCGGT > 1:1088063/1‑149 ATAAAGCGGGTGAAAAGCCTGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCAGGCTTACAGAACGCTCCCCTACCCAACAACGCATAA‑GCGTCGCTGCCGCAGCTTCGGTG > 2:1148222/1‑149 ATAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCAGGCTTACAGAACGCTCCCCTACCCAACAACGCATAA‑GCGTCGCTGCCGCAGCTTCGGTG > 2:1406182/1‑149 ATAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACGCATAA‑GCGTCGCTGCCGCAGCTTCGGTG > 1:289208/1‑149 ATAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGC < 1:319345/67‑1 ATAAAGCGGGTGAAAAGCCCGCTTTATCGTTACGTATGTCAGCATTCGCACTTCTGATACCTCCAGC > 2:319345/1‑67 TAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACAT‑A‑GTGTCGCTGCCGCAGCTTCGGTGCA > 1:1194660/1‑149 TAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCT < 1:1413533/54‑1 TAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCT > 2:1413533/1‑54 GCGGGTGAAAAGCCCGCTTTATCGTTACATATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTAACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACACCATAT‑A‑GTGTCGCTGCCGCAGCTTCGGTGCATGGT > 2:817313/1‑149 GGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCTTAC < 1:1357123/89‑1 GGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCTTAC > 2:1357123/1‑89 CCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACAT‑A‑GTGTCGCTGCCGCAGCTTCGGTGCATGGTTTAGCCCCGTTc > 1:117542/1‑148 CCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACAT‑A‑GTGTCGCTGCCGCAGCTTCGGTGCATGGTTTAGCCCCGTTAC > 2:1311120/1‑149 CCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACAT‑A‑GTGTCGCTGCCGCAGCTTCGGTGCATGGTTTAGCCCCGTTAC > 2:1140155/1‑149 CCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACAT‑A‑GTGTCGCTGCCGCAGCTTCGGTGCATGGTTTAGCCCCGTTAC > 1:977086/1‑149 CCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACAT‑A‑GTGTCGCTGCCGCAGCTTCGGTGCATGGTTTAGCCCCGTTAC > 2:95859/1‑149 AAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/223387‑223539‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgctTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACAT‑A‑GTGTCGCTGCCGCAGCTTCGGTGCATGGTTTAGCCCCGTTAC < CP009273/4032152‑4032009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |