New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4551364 =	80 (1.140)	4 (0.060)	3/256	NT	5.6%	coding (1129/1179 nt)	yjiJ	DUF1228 family putative inner membrane MFS superfamily transporter
	?	CP009273	4551429 =	60 (0.900)					coding (1064/1179 nt)	yjiJ	DUF1228 family putative inner membrane MFS superfamily transporter

GAGCGTACCGGGAAATCTCAATCTTTTAGGCTTTGTGACGCTCATTTACGGCATTGGGCAAATCCTCGGCCCGGCGCTGACCAGTATGCTCAGCAATGGAACATCGGCGCTTGCCAGCGCCACTCTCTGCGGCGCG‑‑‑‑GCGGCGTTGTT‑TATTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4551518‑4551364 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgctgAGCATACTGGTCAGCGCCGGGCCGAGGATTTGCCCAATGCCGTAAATGAGCGTCACAAAGCCTAAAAGATTGAGATTTCCCGGTACGCTCAGTTGGCGGGCGATAGTCATCACCAGAGATGTCGTGCCCATAAAGGTACCGCCAAAAC  >  CP009273/4551429‑4551576                                                                                                                                                                                                                                                                                                                      GAGCGTACCGGGAAATCTCAATCTTTTAGGCTTTGTGACGCTCATTTACGGCATTGGGCAAATCCTCGGCCCGGCGCTGACCAGTATGCTCAGCAATGGAACATCGGCGCTTGCCAGCGCCACTCTCTGCGGCGCG‑‑‑‑GCGGCGTTGTT‑TA                                                                                                                                                            <  1:292339/149‑1  gGCGTACCGGGAAATCTCAATCTTTCAGGCTTTGTGACGCTCATTTACGGCATTGGGCAAATCCTCGGCCCGGCGCTGACCTGTATGCTCAGCAATGGAACATCGGCGCTTGCCAGCGCCACTCTCTGCGGCGCG‑‑‑‑GCGGCGTTGTT‑TAT                                                                                                                                                           <  1:799144/148‑1                                                                                             GCAATGGAACATCGGCGCTTGCCAGCGCCACTCTCTGCGGCGCG‑‑‑‑GCGGCGTTGTT‑TATTGCTGAGCATACTGGTCAGCGCCGGGCCGAGGATTTGCCCAATGCCGTAAATGAGCGTCACAAAGCCTAAAAGATTGAGATTTCCCGGTAC                                                                >  1:1061513/1‑149                                                                                             GCAATGGAACATCGGCGCTTGCCAGCGCCAATCTCTGCGGCGCG‑‑‑‑GCGGCGTTGTT‑TATTGCTGAGCATACTGGTCAGCGCCGGGCCGAGGATTTGCCCAATGCCGTAAATGAGCGTCACAAAGCCTAAAAGATTGAGATTTCCCGGTAC                                                                >  1:675525/1‑149                                                                                                ATGGAACATCGGCGCTTGCCAGCGCCACTCTCTGCGGCGCG‑‑‑‑GCGGCGTTGTT‑TATTGCTGAGCATACTGGTCAGCGCCGGGCCGAGGATATGCCCAATGCCGTAAATGAGCGTCACAAAGCCTAAAAGATTGAGATTTCCCGGTACGCT                                                             >  1:676601/1‑149                                                                                                                  CCAGCGCCACTCTCTGCGGCGCGGCAAGCGCCGATGTTCCATTGCTGAGCATACTGGTCAGCGCCGGGCCGAGGATTTGCCCAATGCCGTAAATGAGCGTCACAAAGCCTAAAAGATTGAGATTTCCCGGTACGCTCAGGTGGCGGGCG                                                >  1:1094710/1‑149                                                                                                                                                 cgacgttctgTTGCTTCGCATACTGGGCAGCGCCGGGCCGAGTATTTGCCCAATGCCTTAAATGAGCGTCACAAAGCCTAAAAGATTGAGATTTCCCGGTACGCTCAGTTGGCGGGCGATAGTCATCACCAGAGATGTCGTGC                       <  2:825598/133‑1                                                                                                                                                       T‑TATTGCGGCGCATACTGGTCAGCGCCGGGCCGAGGATTTGCCCAATGCCGTAAATGAGCGTCACAAAGCCTAAAAGATTGAGATTTCCCGGTACGCTCAGTTGGCGGGCGATAGTCATCACCAGAGATGTCGTGCCCATAAA                <  2:580008/143‑1                                                                                                                                                             GCTGAGCATACTGGTCAGCGCCGGGCCGAGGATTTGCCCAATGCCGTAAATGAGCGTCACAAAGCCTAAAAGATTGAGATTTCCCGGTACGCTCAGTTGGCGGGCGATAGTCATCACCAGAGATGTCGTGCCCATAAAGGTACCGCCAA     <  1:410453/149‑1                                                                                                                                                             GCTGAGCATACTGGTCAGCGCCGGGCCGAGGATTTGCCCAATGCCGTAAATGAGCGTCACAAAGCCTAAAAGATTGAGATTTCCCGGTACGCTCAGTTGGCGGGCGATAGTCATCACCAGAGATGTCGTGCCCATAAAGGTAC           <  2:753756/143‑1                                                                                                                                                              CTGAGCATACTGGTCAGCGCCGGGCCGAGGATTTGCCCAATGCCGTAAATGAGCGTCACAAAGCCTAAAAGATTGAGATTTCCCGGTACGCTCAGTTGGCGGGCGATAGTCATCACCAGAGATGTCGTGCCCATAAAGGTACCTCCAAA    >  1:495595/1‑149                                                                                                                                                                GAGCATACTGGTCAGCGCCGGGCCGAGGATTTGCCCAATGCCGTAAATGAGCGTCACAAAGCCTAAAAGATTGAGATTTCCCGGTACGCTCAGTTGGCGGGCGATAGTCATCACCAGAGATGTCGTGCCCATAAAGGTACCGCCAAAAC  >  1:743542/1‑149                                                                                                                                                                                                                                                                                                                      GAGCGTACCGGGAAATCTCAATCTTTTAGGCTTTGTGACGCTCATTTACGGCATTGGGCAAATCCTCGGCCCGGCGCTGACCAGTATGCTCAGCAATGGAACATCGGCGCTTGCCAGCGCCACTCTCTGCGGCGCG‑‑‑‑GCGGCGTTGTT‑TATTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4551518‑4551364 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgctgAGCATACTGGTCAGCGCCGGGCCGAGGATTTGCCCAATGCCGTAAATGAGCGTCACAAAGCCTAAAAGATTGAGATTTCCCGGTACGCTCAGTTGGCGGGCGATAGTCATCACCAGAGATGTCGTGCCCATAAAGGTACCGCCAAAAC  >  CP009273/4551429‑4551576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.