| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1515197 | 33 (0.470) | 2 (0.030) | 3/254 | NT | 5.9% | intergenic (+13/+23) | mcbR/yncD | colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled/putative iron outer membrane transporter |
| ? | CP009273 | = 1515203 | 33 (0.500) | intergenic (+19/+17) | mcbR/yncD | colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled/putative iron outer membrane transporter | |||||
GAGCATATAGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACAGAACCAACGTATTCTTTATCGAATAAATTATC > CP009273/1515056‑1515345 | gAGCATATAGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAAACGCTAGAGTAAATGCCCGGCAAATAc < 1:1142647‑M2/149‑2 (MQ=255) atatAGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAAt > 2:1055502/1‑143 (MQ=255) tataGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATAccgggc < 1:1067381‑M2/149‑7 (MQ=255) tataGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATAccgggc < 1:209594‑M2/149‑7 (MQ=255) taGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATAccgggcat < 1:867056‑M2/149‑9 (MQ=255) aaaCTATCATCTGTTCATCGTGGTGTGAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGTATTTGccgggcatttac > 1:352564‑M2/1‑137 (MQ=255) aCTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGt > 1:867783/1‑149 (MQ=255) cttctcTTACTCGCGGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTa < 1:413401/147‑1 (MQ=255) catcTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTa < 1:706280/149‑1 (MQ=255) cTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAAtct > 1:977897/1‑149 (MQ=255) tGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAAtc > 2:865246/1‑143 (MQ=255) cGTTAAAAGCAAAAGACAAATAGGGAGGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATATCGGGCATCAATGTAATTACTCAAAtctc < 2:659325/143‑1 (MQ=255) gTTAAAGGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTcc < 2:912184/143‑1 (MQ=255) aaGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGGAATACAATCGTTAAAGTAAATTCCCGGCAAATACCGGGCATCAAGGTAAGTACACAAATCTccccaca > 2:114203/1‑138 (MQ=255) gCAAAAGACAAGGATGGATGCAGACATTGTCTTGCTGCAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAat < 2:678350/143‑1 (MQ=255) agagGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGTATTTGccgggcatttactttaacgattgtattgctggtataaaatagcaatattttgtt > 1:11169‑M2/1‑95 (MQ=255) gggATGCAGACATTGGCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAAt < 1:771640/149‑1 (MQ=255) cAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATAAACACGAAAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTc > 1:572248/1‑149 (MQ=255) aGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAAtt < 2:374383/143‑1 (MQ=255) cATTGTCTTGCTGAACTTATGCAACAAAATATTGCCATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCggg < 1:10734/149‑1 (MQ=255) cATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCggg < 1:513140/149‑1 (MQ=255) ctcgttcgactgaaagtagCCAACCCACTATTTCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCCGtatttgcctggcatttactttaacgattgtattgctggtataaaatagcaatattttgttgcataatttcagca < 1:424829‑M1/140‑75 (MQ=255) tCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAg > 1:1072667/1‑149 (MQ=255) tGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCAGGCAAATAcggggcatttactttaacgattgtattgctggtataaaatagaaatagtgggttggctactttcagtcgaacgag < 1:424829‑M2/149‑76 (MQ=255) tGAAATTATGCAACAAAATATTGCTATTTTATACAAGCAATACAATCGTTAAAGTAAATGCCCGCCAAATACCGGGCATCAAGGTAATTAATAAAATCTCCACGCAATATTCATGCCGACACCATAATTTATTCCGGGCGAAg > 2:287109/1‑143 (MQ=255) gAAATTATGCAACAAAATATTGCTATTTTATCCCAGCAATACAATCGTTAAAGTAAATGGCCGGTAAATACCGGGCGTTAAGGCTATTACTGAGATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAgg < 2:892391/143‑1 (MQ=255) aaaTAATTCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGt < 2:889381/143‑1 (MQ=255) aTGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGACAAAGTCAATGACAGGGAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGACGGCTCGTa > 2:41760/1‑143 (MQ=255) aacaaAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGcaaataccgggcatttactttaacgattgtattgctggtataaaatagcaatattttgttgcataatttcagcaagacaatgtctgcatccctct > 1:11169‑M1/1‑54 (MQ=255) aaTATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGa > 1:1149697/1‑149 (MQ=255) atTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGtt < 2:581616/143‑1 (MQ=255) atTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGtt < 2:329696/143‑1 (MQ=255) atTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATGTGCTCCGGGCGAAGGTTCGTAATATCGCCCGtt > 2:1104253/1‑143 (MQ=255) tATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGCCGAAGGTTCGTTATATCGCCCGTTTGACt > 2:455054/1‑143 (MQ=255) ttttATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGGAGGTTCGTAATAACGCCCGTTTGACTCATTGACa > 1:720698/1‑149 (MQ=255) ttttATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCa > 2:531368/1‑143 (MQ=255) aCCAGCATTAAAATCGTTACAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAGTATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACa < 2:762155/143‑1 (MQ=255) ccAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTAGTCCGGGCGAAAGTTCGTAATATCGCCCGTTTGACTCCTTGACaa > 2:572774/1‑143 (MQ=255) caTACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACa < 2:205481/142‑1 (MQ=255) tACAATCGTTAAAGTAAAGGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACAGAACCAAc < 1:709136/149‑1 (MQ=255) ttAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACAGAACCAACGt > 2:603186/1‑143 (MQ=255) ttAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACAGAACCAACGGATTCtt > 1:1007260/1‑149 (MQ=255) gTAAATGCCCGGcaaataccgggcatttactttaacgattgtattgctggtataaaatagcaatattttgttgcataatttcagcaagacaatgtctgcatccctctttgtcttttgcttttcacaccacgatgaacagatgatagttt > 1:352564‑M1/1‑12 (MQ=255) aTGCCCGGtatttgccgggcatttactttaacgattgtattgctggtataaaatagcaatattttgttgcataatttcagcaagacaatgtctgcatccctctttgtcttttgcttttaacgcagcgagtaacagatgatagttttcta < 1:867056‑M1/149‑142 (MQ=255) gCCCGGtatttgccgggcatttactttaacgattgtattgctggtataaaatagcaatattttgttgcataatttcagcaagacaatgtctgcatccctctttgtcttttgcttttaacgcagcgagtaacagatgatagttttctata < 1:209594‑M1/149‑144 (MQ=255) gCCCGGtatttgccgggcatttactttaacgattgtattgctggtataaaatagcaatattttgttgcataatttcagcaagacaatgtctgcatccctctttgtcttttgcttttaacgcagcgagtaacagatgatagttttctata < 1:1067381‑M1/149‑144 (MQ=255) gCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACGATGACAGAACCAACGTATTCTTTATCGAATaaa > 1:436907/1‑149 (MQ=255) gtatttgccgggcatttactctagcgtttgtattgctggtataaaatagcaatattttgttgcataatttcagcaagacaatgtctgcatccctctttgtcttttgcttttaacgcagcgagtaacagatgatagttttctatatgctc < 1:1142647‑M1/149‑149 (MQ=255) | GAGCATATAGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACAGAACCAACGTATTCTTTATCGAATAAATTATC > CP009273/1515056‑1515345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |