New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 4532499 =149 (0.920)17 (0.110) 17/278 14.4 10.7% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?CP009273 4532813 = 143 (0.940)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 159 total aligned reads displayed.

GACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTT  >  CP009273/4532666‑4532961
                                                                                                                                                     |                                                                                                                                                    
gACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAAATCAATAAGTTTGTAAGAGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAAt                                                                                                                                                     >  2:2607891/1‑149 (MQ=255)
  cGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGt                                                                                                                                                   <  1:286252/149‑1 (MQ=255)
  cGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGt                                                                                                                                                   <  1:1520921/149‑1 (MQ=255)
   gCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCATACAAATAAACGGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGtt                                                                                                                                                  <  1:2560991/149‑1 (MQ=255)
    cATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGttt                                                                                                                                                 <  1:904713/149‑1 (MQ=255)
    cATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGttt                                                                                                                                                 <  2:1489976/149‑1 (MQ=255)
     aTCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTc                                                                                                                                                <  2:1493074/149‑1 (MQ=255)
      tCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTGTGA‑GTCAAAATGGCCCCAAATGTTTCa                                                                                                                                               >  2:440324/1‑149 (MQ=255)
       ttccctcctTCTTCACCCCCAAACACACCTCATGCA‑ATAAAAACAACTAAACATAAAGATAACAATAGAACATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAACTGTTTCAt                                                                                                                                              <  1:471953/146‑1 (MQ=255)
        ttCCTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCACCAAATGTTTCATc                                                                                                                                             >  1:2003599/1‑149 (MQ=255)
        ttCCTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATACTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATc                                                                                                                                             >  1:2155219/1‑149 (MQ=255)
        ttCCTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGAGATGCTTTCCTCTATGA‑GTCAAAATGGCCGAAAATGTTTctta                                                                                                                                             >  1:41436/1‑146 (MQ=255)
           cTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAACTGTTTCATCttt                                                                                                                                          >  2:299000/1‑149 (MQ=255)
           cTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCttt                                                                                                                                          >  2:2611338/1‑149 (MQ=255)
           cTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCttt                                                                                                                                          >  2:2089801/1‑149 (MQ=255)
           cTCATTCTTCTCTCCAAAAACCACC‑AACACAGGAATGAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCttt                                                                                                                                          >  2:1303624/1‑149 (MQ=255)
            tCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAATTGtcttgtattta                                                                                                                                         >  2:30004/1‑139 (MQ=255)
               ttcttcTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTGGTA‑GGCAAAATGGCCCCAATTGtcttgtatttattt                                                                                                                                      <  1:1234287/149‑14 (MQ=255)
               ttcatcTCGGCAAATACCACCTCATTCG‑ATATTAACATCGATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTggg                                                                                                                                      >  1:246505/1‑149 (MQ=255)
                tcttctCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTgggg                                                                                                                                     <  2:2051660/149‑1 (MQ=255)
                     tctcCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaaa                                                                                                                                <  2:292757/149‑1 (MQ=255)
                     gtccccagaaCCACCCACTGCA‑AAATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAAAAAATAACCTGACATAGTCTGTCGGTGTGGCCTTCCTCTATGT‑GTCAAAATGGCCCCAAGTGTTTCATCTTTTGGGGGaaaa                                                                                                                                <  1:1226642/141‑1 (MQ=255)
                      ctcCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCAGCTTTTGGGGGaaaca                                                                                                                               >  2:1211094/1‑147 (MQ=255)
                       tcCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTGTGGGGGCAAACt                                                                                                                              >  2:2354407/1‑149 (MQ=255)
                         cAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt                                                                                                                            <  2:2249517/149‑1 (MQ=255)
                         cAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt                                                                                                                            >  1:384298/1‑149 (MQ=255)
                          aaaaaCCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACggtg                                                                                                                           >  1:1430041/1‑149 (MQ=255)
                          aaaaaCCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATAGTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACggtg                                                                                                                           >  1:1432773/1‑149 (MQ=255)
                             acccaccTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAATTTGTCCGCTATGCTTTCCTCGATGA‑GTCAAAAGGGCCCCAAATGGTTAATTTCTTGGGGGAAAACttggcat                                                                                                                        >  1:621937/3‑143 (MQ=255)
                                 accTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACAGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCACAATGGCCCCAAATGTTTCATGTTTCGGGGGAAAACTGTGCAGTGtt                                                                                                                    >  2:1009065/1‑149 (MQ=255)
                                    tCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATG‑ATTAAAGTAGCAGGGCGAAATGGCCCCAAATGTTTCATCCTTTGGGGGAACACTGTGCAGTGTTGGc                                                                                                                 >  2:621665/1‑149 (MQ=255)
                                      aTGCA‑ATATAAACATCTAACAATAAAGATAACAGTAGAATATTACGCCATCATATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTTGGGGAAAACTGTGCAGTGTTGGCaa                                                                                                               >  2:1958266/1‑148 (MQ=255)
                                       tGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGATTGTCCGCGATGCTTTCCTGTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTATGGGGGAAAAATGTGCAGTGTTGGGAGt                                                                                                              >  2:1802083/1‑149 (MQ=255)
                                        gCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc                                                                                                             >  1:1002072/1‑149 (MQ=255)
                                         gctatatAAACATCTATAAATAAAGATAACAATGGAATATTAAGCAAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCCATGA‑GTCAAAATGGTCCCAAATGTTTCCTCTTTTGGGGGAATACTGTGCAGTGTTGGCAGTc                                                                                                             <  1:1394958/146‑1 (MQ=255)
                                         cA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa                                                                                                            <  2:668531/149‑1 (MQ=255)
                                             tataAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAGGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc                                                                                                         <  1:1916009/149‑1 (MQ=255)
                                                    aTCTATAAAGAAAGATAACAACAGAATATTAAGCCAACAAATAAACTGAAAACGTTTGTCCGCGATGCTTTCCGCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa                                                                                                  <  2:2023944/149‑1 (MQ=255)
                                                       tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTCAAAAAGTTAGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTGTCATCATTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCATTTacaa                                                                                               >  1:794228/1‑149 (MQ=255)
                                                        ataaataaAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa                                                                                              >  2:1113195/1‑149 (MQ=255)
                                                         taaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGGAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa                                                                                             >  2:883460/1‑149 (MQ=255)
                                                          aaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaac                                                                                            >  2:917468/1‑149 (MQ=255)
                                                            ataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa                                                                                          >  1:624604/1‑149 (MQ=255)
                                                              aaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCATATGTTTCATCTTTTGGGGGAAAACTATGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg                                                                                        <  2:1727633/149‑1 (MQ=255)
                                                              aaaGAGAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACCCGTGTACAAAACAAAg                                                                                        <  1:1640835/149‑1 (MQ=255)
                                                                aGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCTGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg                                                                                      <  1:1623731/149‑1 (MQ=255)
                                                                 gATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt                                                                                     >  2:2129372/1‑149 (MQ=255)
                                                                 gATAACAATAGAATATTAAGCAAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt                                                                                     >  1:347203/1‑149 (MQ=255)
                                                                    aaCAATCGAATATTAAGCCACCAAGTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTGTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACa                                                                                  <  1:2663667/149‑1 (MQ=255)
                                                                       aaTAGAATATTAAGCCAACAAATAAACTGACAAAGTCGAACAGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGaa                                                                               >  2:1300291/1‑149 (MQ=255)
                                                                         tAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACg                                                                             >  1:665595/1‑149 (MQ=255)
                                                                         tAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACg                                                                             >  2:1899280/1‑149 (MQ=255)
                                                                            aaTATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACt                                                                          >  2:431032/1‑149 (MQ=255)
                                                                             atatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTg                                                                         <  1:1669303/149‑1 (MQ=255)
                                                                              tatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGc                                                                        <  1:1363008/149‑1 (MQ=255)
                                                                                ttAAGGCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGccc                                                                      <  1:1044401/149‑1 (MQ=255)
                                                                                   aGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATg                                                                   >  1:2001752/1‑149 (MQ=255)
                                                                                    gCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGt                                                                  <  1:2413371/149‑1 (MQ=255)
                                                                                     ccAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTc                                                                 >  1:472469/1‑149 (MQ=255)
                                                                                        acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAt                                                              <  1:1918394/149‑1 (MQ=255)
                                                                                              caaCTGAAAAAGTTTGGCCGCGATGCTTTCCTAAGGCA‑GGCGCACTTGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAACCTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGaa                                                        <  1:2549987/148‑1 (MQ=255)
                                                                                              aaaCGGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGaa                                                        <  2:1764729/149‑1 (MQ=255)
                                                                                               aaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGaaa                                                       >  1:2610321/1‑149 (MQ=255)
                                                                                               aaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGaaa                                                       >  2:101948/1‑149 (MQ=255)
                                                                                                 cTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCAGCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATa                                                     <  2:705176/149‑1 (MQ=255)
                                                                                                  tGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAg                                                    >  2:791122/1‑149 (MQ=255)
                                                                                                  tGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAAAAg                                                    >  1:87606/1‑149 (MQ=255)
                                                                                                      aaaGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttt                                                >  1:927365/1‑149 (MQ=255)
                                                                                                      aaaGTTTGTCCGCGATGCTTCCCGCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTATGGGGGAAAACTATGCAGTGTGGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttt                                                <  2:2096709/149‑1 (MQ=255)
                                                                                                       aaGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGAAAACCTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGGCTGCCCATGTCGATTTCGAAATAGttttt                                               >  2:2039811/1‑149 (MQ=255)
                                                                                                            tGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa                                          <  1:2162219/149‑1 (MQ=255)
                                                                                                            tGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa                                          <  2:1365785/149‑1 (MQ=255)
                                                                                                                cgcgATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaa                                      >  1:1335693/1‑149 (MQ=255)
                                                                                                                cgcgATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAAGGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaa                                      <  2:1339857/149‑1 (MQ=255)
                                                                                                                cgcgATGCTTTCCTCTACGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaa                                      <  2:1339851/149‑1 (MQ=255)
                                                                                                                  cgATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaaag                                    >  2:2386389/1‑149 (MQ=255)
                                                                                                                      gCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAACACAAAGTGTACAGAACGTCTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAagcagc                                <  2:1292965/149‑1 (MQ=255)
                                                                                                                      gCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAagcagc                                <  1:655232/149‑1 (MQ=255)
                                                                                                                             tctATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGaaaa                         >  1:534732/1‑149 (MQ=255)
                                                                                                                               tATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACCGTGCAGTATTGGCAGTCAAACTCCTTTCCACAACACCGTGCACAGAGGGACTGCCTTTGTCCAGTTATGAATAGGGTGATGAAAGGAAAGCAGCATGAGAAtt                       >  1:234033/1‑149 (MQ=255)
                                                                                                                                      tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTGCAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGCAAATTaaaaag                 >  1:865897/1‑147 (MQ=255)
                                                                                                                                      tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAct                 >  2:2106869/1‑149 (MQ=255)
                                                                                                                                      tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAct                 >  1:1779527/1‑149 (MQ=255)
                                                                                                                                      tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGGCGATTTAGAAATCGTTTTTTGAAAGGAAAGCAGCATGAAAATGAAACct                 >  2:732913/1‑149 (MQ=255)
                                                                                                                                      tCAAAATGGCCCCAAATGTTGCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAct                 <  1:1007680/149‑1 (MQ=255)
                                                                                                                                        aaaaTTGCCCCAAATTTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAActct               <  2:480937/149‑1 (MQ=255)
                                                                                                                                        aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAActct               <  1:1113195/149‑1 (MQ=255)
                                                                                                                                        aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAActct               <  2:1975608/149‑1 (MQ=255)
                                                                                                                                        aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAActct               <  2:869727/149‑1 (MQ=255)
                                                                                                                                         aaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTg              >  2:2237190/1‑149 (MQ=255)
                                                                                                                                          aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTgg             <  1:2627412/149‑1 (MQ=255)
                                                                                                                                              gCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAAt         >  2:755077/1‑149 (MQ=255)
                                                                                                                                              gCCCCAAAGCTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAAt         <  2:65253/149‑1 (MQ=255)
                                                                                                                                               ccccAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATc        >  2:1790203/1‑149 (MQ=255)
                                                                                                                                                 ccAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCgt      >  2:1375500/1‑149 (MQ=255)
                                                                                                                                                   aaaTGTTTCATCTTTTTGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGACAATTAAAACTCTGGCAATCgtgg    >  2:1683770/1‑147 (MQ=255)
                                                                                                                                                   aaaTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCgttg    >  2:1201030/1‑149 (MQ=255)
                                                                                                                                                   aaaTGTTTCATCTTGTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGACAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCgttg    <  1:2569058/149‑1 (MQ=255)
                                                                                                                                                    aaTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTATCGACAGGCAGCTGATGTTTTTTAAGAGTTTGTTTTTTTTAAGGAAAGCAGCATGAACATTACGGCTCTGGCAATCgttgt   <  1:1884826/149‑1 (MQ=255)
                                                                                                                                                     aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCgttgtt  <  2:2182807/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCA‑ATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGA‑GTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTT  >  CP009273/4532666‑4532961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.