| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 2,420,353 | A→T | intergenic (‑86/+135) | hisJ ← / ← argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,420,353 | 0 | A | T | 96.7% | 278.7 / NA | 91 | intergenic (‑86/+135) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (2/1); new base T (50/38); total (52/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
CGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCAC > CP009273/2420211‑2420495 | cgcCGTTGCGTTGGAGAAGGCAGGAACCAGAGAGAGCGATTGGTTTGAGCGGGCCTTAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATcc < 1:257039/149‑1 (MQ=255)cgcAGTTGCGCGGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCCCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATcc < 1:601354/149‑1 (MQ=255) gcAGTTGCGCTGGAGAAGGCCAGAGCCAGAGAGAGCGATAGCACCAGTTTTTCCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAatat < 2:187572/144‑1 (MQ=255) cgcTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAGATTGACCATCAAGGCAATATATCCCGc > 2:569584/1‑144 (MQ=255) gcTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCACCTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGcc > 2:487469/1‑144 (MQ=255) tGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTATATAGGGAACATTTACAGGTGTGTTACACTTATCGTGCCATCAAATTGACCATCAAGGCAGTATATCCCGCCCCGttcg > 1:531319/1‑147 (MQ=255) ggAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGGTTGTTACACTTATCGTGCCATAAAATTGACGATCAAGGCAATATATCCCTCCCCGGTAGa > 1:175253/1‑149 (MQ=255) gagaAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTTTTTTTATAGGGAATATTTACAGGTTTGTTCTACTAATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGAc < 1:596192/149‑1 (MQ=255) gagaAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGt < 2:250804/144‑1 (MQ=255) gagaAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATACTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGAc < 1:157349/149‑1 (MQ=255) gagaAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGACTTATTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCCTCAAGGCAATATATCCCGCCCCGCTGGAc > 1:61364/1‑149 (MQ=255) ggCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGAc > 2:353703/1‑144 (MQ=255) gCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGAAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATAACCCGCCCCGTTAGACGtatta > 1:281239/1‑149 (MQ=255) ccAGAACCAGAGAGAGCGATAGCACCAGTTGTTTCATAATGTGCTCAACTGACAGTATTTATATCGGGAATATGTTCAGGTTTGTTACACTTATCGTGCCATAAAGTTGACCAGCAAGGCAATATATCCCGCCCCGTGAGACGt > 2:932141/1‑144 (MQ=255) cAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTCCAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTattatt > 1:243015/1‑149 (MQ=255) aCCAGAGAGACCGATAGCACAAGTTTTTTCATACTGTCCTCCACTGACAGTCTTTTTATAGGGAATATTTACAGGTCTGTTACACTTATCGTGCCATAACATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTc < 1:284163/149‑1 (MQ=255) cAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTAttt < 2:823421/144‑1 (MQ=255) gagagagCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTa > 1:820248/1‑149 (MQ=255) gagtgCGATAGCACCGGTTTTTTCTTTATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCa < 2:379992/144‑1 (MQ=255) agagCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTACCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTaaaa < 1:728998/149‑1 (MQ=255) agCTATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAAt < 1:1010249/149‑1 (MQ=255) agCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAAt < 1:965311/149‑1 (MQ=255) gCGATGGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTTTAGGGAATATTTACCGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTaa < 2:54997/144‑1 (MQ=255) gCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATg < 1:747182/149‑1 (MQ=255) gCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAAACGTATTTTTTTTCATTaa > 2:128477/1‑144 (MQ=255) agATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGc < 1:639481/148‑1 (MQ=255) gATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATAATAACAGGAATGTTTCACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTaaaa > 2:987650/1‑144 (MQ=255) cACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGt > 1:359955/1‑149 (MQ=255) aCCAGTTTTTTCATAATGTCCTCAACTGACCGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCtt < 2:739857/144‑1 (MQ=255) aCCAGTTTTTTCATAATGTCCTCAACTGACAGGCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTGTTAAGTa > 1:663070/1‑149 (MQ=255) cAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATg > 1:895834/1‑149 (MQ=255) aGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGATTAAGTATGc > 1:340480/1‑149 (MQ=255) gTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATCTATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTACGt > 2:866859/1‑144 (MQ=255) ttttttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTACGTATGCAt > 1:833960/1‑149 (MQ=255) ttttttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCAt > 1:274090/1‑149 (MQ=255) tttttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCAtt > 1:759082/1‑149 (MQ=255) ttttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCAttt > 1:1075826/1‑149 (MQ=255) tCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAACTGCTTAAGTATGCATTTCaa > 1:909872/1‑149 (MQ=255) tCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCaa > 1:909864/1‑149 (MQ=255) tCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCaa > 1:854058/1‑149 (MQ=255) aTAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGAATGCATTTCAATg > 1:237781/1‑149 (MQ=255) ttaTGTCCTCAACTGACAGTCTTTTTATAGGGAATTTTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGc < 1:963070/147‑1 (MQ=255) aaTGTCCTCAACTGCAAGTCTTTTTATAGGAAACAATTACATGTTTGTTACACTTATCGTGCCATAAAATTGACCGTCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGca > 1:827179/1‑149 (MQ=255) aTGTCTCCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCaa < 2:979457/144‑1 (MQ=255) aTGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGCTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTCTTTTTAATTAACGAGGCTTacgcgtgaatttaaa > 2:828743/1‑130 (MQ=255) gcgcTCAACGGACAGTCTTTTGATAGGGAATATTTACGGGTTTGTTACACCTATCGTGCCATAAACTTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATg < 2:187679/141‑1 (MQ=255) tCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGcaccac > 1:843151/1‑149 (MQ=255) gcTCAGCTGACCGTTTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCTCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCCATGca < 2:349553/143‑1 (MQ=255) cAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGcacca > 2:685151/1‑144 (MQ=255) cAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATa < 1:1034665/149‑1 (MQ=255) aaCTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAACTTGACCAAATTGATTTAAGCGAACGCCTCTTTTGACGTCTTGATTTTCATTAAAAATGCTTATGTATCCATTTCAATGcaccac < 2:986759/144‑1 (MQ=255) aaCTGACAGTCTTTTTATAGGGAATATTTACAGGTATGTTACACTTATCGTGCCATAAAATTGAGCAACAATGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAg > 1:493318/1‑149 (MQ=255) tGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATGTATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGAt > 2:691716/1‑144 (MQ=255) tGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCAAGATAGTGc > 1:200969/1‑149 (MQ=255) ttcAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATa < 2:404315/142‑1 (MQ=255) gACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTAGCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATa < 2:736749/144‑1 (MQ=255) gTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGGTAGTGcaacaa > 1:536065/1‑149 (MQ=255) gTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATCCTTAAGTATGCATTTCCATGCACCACGATAGTGc > 2:516227/1‑144 (MQ=255) tCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACaaa > 1:896295/1‑149 (MQ=255) tttttttttttttttttACAGGTTTGTTACACTTATCGTGCCATAAAATTGTCCATCATGGCAATATATCCCGCCCCGTTAGTCGTATTTTTTTTCATTAAAAAGTCTTAAGTATGCATTTCAATGCACCACGATAGTGcaaca > 2:985522/15‑144 (MQ=255) tataGCGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGc < 1:143039/149‑1 (MQ=255) ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAGTTGACCATCAAGGCAATATATCCCGCCCCGATAGTCGTATTATTTTTCATTAAAACTGCTTAAGTATGCATTTCAATGCACCACGATTGTGCTACAAACCTGGc > 2:930875/1‑144 (MQ=255) ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTACAAATGCTTAAGTATGCATTTCAATGCACCACCATAGTGCAACAATCCTGGc > 2:454001/1‑144 (MQ=255) ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCTACAAACCTGGc > 2:585492/1‑144 (MQ=255) ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCa > 1:850876/1‑149 (MQ=255) ggAATATTTACAGGGGTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAGAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAGAcacggc > 2:369801/1‑139 (MQ=255) aaTATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCCAGGCAGTATAACCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGAGCAACAAACCCGACGTGCAcc > 1:285864/1‑149 (MQ=255) tACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCa < 2:776263/144‑1 (MQ=255) gTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGAATGCATTTCAACGCACCACGATAGTGCAACAAACCTCGCGTGCACCatgatg > 2:793628/1‑144 (MQ=255) gTTTGTTACACTTAGCGTGACATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTCTGCATGTCAATACCCCACGATAGTGCAACAAACCTGGCGTGCACCatgatg < 2:220935/144‑1 (MQ=255) tACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCAtt > 2:540367/1‑144 (MQ=255) acTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGTGTGCACCATGATGATCATTCCATCAgg > 1:99200/1‑149 (MQ=255) cTTATCATTCAATAAAATTTACCATCAAGGAAATATATCCCGCCCCGTGATACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCAt < 2:159532/144‑1 (MQ=255) ttATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTa > 1:579168/1‑149 (MQ=255) tATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCa < 2:643797/144‑1 (MQ=255) aTCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGGGCACCATGATAATCATCCCATCAg > 2:239766/1‑144 (MQ=255) aTCGGGCCATAAGATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAg < 2:442585/144‑1 (MQ=255) cGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGc < 1:392703/149‑1 (MQ=255) gTGCCATAAAATTGACCATCCAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTa < 2:457800/144‑1 (MQ=255) tGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTAc > 2:984882/1‑144 (MQ=255) ccATACAATTGACCATAAATGCAATAGATCCCGCCACTTTAGACCTATTAGTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTTCACCATGATGATCATTCCATCAGGTACAg < 2:124793/144‑1 (MQ=255) caaTAAAATGCACCATCAAGTCAATATATCCCGCCCCGGTAGACGTATTTTTTTTCATTAAAAATGCTTAAGTATGCAATTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAg < 2:108219/142‑1 (MQ=255) aaaTTGACCATCAAGTCCATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGTAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTcc < 2:662065/144‑1 (MQ=255) aaTTGACCAGAAAGGCTATTTGGCCCGCCCCGGTTGACGTAGTCGTTTGCATTAAAAATGCTGAAGTATGCATTTCAATGCACCACGATAGTGCAACATCCCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGa < 1:906551/149‑1 (MQ=255) gACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCg < 2:819036/144‑1 (MQ=255) ccATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAATCCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATc < 1:610214/149‑1 (MQ=255) aTCAAGGCACTATATCCCCCCCCGTTCGACGTATTATTTTTCATTAAAAATGCTTAAGAATGCATTTCAATGCAACACGATAGTGCAACAAACCTGGCGAGCACCATGATGCTCATTCCATCAGGTACAGCTTCCCAGCGACGt > 2:271400/1‑144 (MQ=255) aTCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAg > 1:425155/1‑149 (MQ=255) tCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGt > 1:454872/1‑149 (MQ=255) aaGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCa < 1:1074493/149‑1 (MQ=255) aGGCGATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCAGTTCAATGCACCACGATAGTGCAACAATCCGGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCAc < 1:258730/149‑1 (MQ=255) cAATATATCCCGCCCCGTTAGACGTATTATTTTTCGTTAAAAAGGCTTAAGTATGCATTTGATTGGACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGAGACGTTTCGGTc > 2:344692/1‑144 (MQ=255) | CGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCAC > CP009273/2420211‑2420495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |