New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2269346	0 (0.000)	43 (0.990)	39/292	0.2	100%	coding (595/1026 nt)	yejE	microcin C transporter YejABEF, permease subunit; ABC family
	?	CP009273	3576788 =	NA (NA)					intergenic (+10/‑55)	yrhA/insA	pseudogene, interrupted by IS1E/IS1 repressor TnpA

CTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2269199‑2269346 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACAT  >  CP009273/3576788‑3576923                                                                                                                                                                                                                                                                                              CTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGGCGCTGTTTTTGATTATTTTACTTTCCAGCGTCGG                                                                                                                                         >  2:704784/1‑149      TCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGG                                                                                                                                         >  1:119203/1‑144        TCTGTTCCAGCGTGATGGGCGTGTTGGCAGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGGCGGGTGATGC                                                                                                                                  >  2:485734/1‑149        TCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGTTCTCTGGGGGCAACGCTTTATTGAAGTATGGTCGGGGATGCCGGCGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGg                                                                                                                                       >  1:220934/1‑143        TCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTGTTGAATTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGC                                                                                                                                  >  2:542391/1‑149            TTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATG                                                                                                                                   >  1:423521/1‑144                AGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTCAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGC                                                                                                                               <  1:353700/144‑1                   GTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAA                                                                                                                            <  1:349694/144‑1                          gcgggtcGGCGGGGGCGTCACCAGGCTCTTCTGCCGGTAAAGCCTATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCTTCGGGTGATGCTGCCAACTTACTGATTTA                                                                                                                <  2:522698/142‑1                          GCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCACCTTACTG                                                                                                                     >  1:299448/1‑144                          GCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTA                                                                                                                <  2:123748/149‑1                            GTGCTGCCGGGGGCGNTACAAGGNTNTTACGGGGGTAAAGCCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGTGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGT                                                                                                              <  2:562881/149‑1                                      GGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT                                                                                                    <  2:632696/149‑1                                         gGCTACAAGGCTATTGCGGCGGTAAAGTCGATCTTTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATG                                                                                                      <  1:34470/143‑1                                            TACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGGGATGCTGCCAACTTACTGATTTAGTGTCTGATGGTGTTTTT                                                                                              >  2:483604/1‑149                                                AGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTAGGGGGTGCCGGCGCTGTTGTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTT                                                                                               >  1:545138/1‑144                                                 GGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTT                                                                                              <  1:648450/144‑1                                                  GCTATTACGGCGGTAAAGTCGATCGCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTG                                                                                             <  1:656140/144‑1                                                    TATTACGGCGGTAAAGTCGCTCGTCGGGGACAACGCGTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAG                                                                                           <  1:251376/144‑1                                                          GGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTC                                                                                     >  1:661770/1‑144                                                             GGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCT                                                                             >  2:536015/1‑149                                                              GTAAATGCGATCTCTGGGGACGACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCCACTTACTGATTTAGTGGATGATGGTGTTTTTGAGGTGCTCCAGT                                                                                 <  1:337249/144‑1                                                                      GATCTCTGGGGACAACGCCTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTCCTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTCAGGTGCTCCAGTGGCTTCTGTTTCT                                                                    <  2:371929/149‑1                                                                       ATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATCCCGACGTTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT                                                                        <  1:333525/144‑1                                                                       ATCTCTGGGGACAACGCCTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTCCTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT                                                                        >  1:333243/1‑144                                                                                   AACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATTGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTG                                                            >  1:573841/1‑144                                                                                   AACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTGTGATTATTTTACTTTCCAGCGTCGGGTGATGCGGCCAACTTACTGATTAAGCGTCTGATGGTGTTTTTGAGGTGCTCCAGCGGCTTCTCTTTCTATCACCTG                                                            >  1:392964/1‑144                                                                                      cCTTTATTGAAGTATGGCCGGGGATGCCGACGCTGTTTTTGATTCTTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT                                                    <  2:58758/148‑1                                                                                       CTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTG                                                   <  2:490069/149‑1                                                                                          tatgggAGTATGGTGGGGGATGCCTACCCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGGGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTC                                                <  2:135725/143‑1                                                                                          TATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTC                                                >  2:670909/1‑149                                                                                              GAAGTATGGTCGGGGACGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTCCCAACTTACTGATTTAGTCTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTT                                                 <  1:50597/144‑1                                                                                               AAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTA                                           <  2:424718/149‑1                                                                                                 GTATGGTCCGGGATGCCGACCGTGTTTGTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAG                                              <  1:526108/144‑1                                                                                                     GGTCGGGGATGCCGACGCTGTTTTTCATTAGTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTACTGTTCAGCTACTGACG                                     >  2:384303/1‑149                                                                                                      GTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGG                                    <  2:262980/149‑1                                                                                                      GTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATATAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACT                                         >  1:84719/1‑144                                                                                                       gCGGGGACGCCGACGCCGTTTTTGATTATGTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGG                                   <  2:585645/148‑1                                                                                                         GGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGT                                 >  2:679706/1‑149                                                                                                                   atGCTGTTCTTAATTACTTTACTTTCCAGCGCCGGGTGATGCTGCCAACTTACTGATTTAGTGTATTATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTCCTATCAGCTGTCCCTCCTGTTCAGCTACCGACGGGGTGGTGC                            <  1:127295/142‑1                                                                                                                                 TATTTTACTTTCCAGCGTCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGC         >  2:450823/1‑149                                                                                                                                          TTCCATCGGCGGGTGATGTTGCCAACTTACTGATTTAGTGTATGATGGTGTTTGTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAGGCACCGCCGGA     <  1:288773/144‑1                                                                                                                                             CAGCGTCGGTGGATGCTGCCAACTTACTGATTTAGTGTATGAGGGTGTTTTTGAGGGGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACAT  <  1:497586/144‑1                                                                                                                                                                                                                                                                                              CTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2269199‑2269346 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACAT  >  CP009273/3576788‑3576923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.