New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1706351 =	37 (0.850)	4 (0.090)	4/284	6.2	9.8%	coding (572/636 nt)	nth	DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
	?	CP009273	1706366 =	38 (0.900)					coding (587/636 nt)	nth	DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGCGTTTGTAATCGTACTCAATTTGCGCCGGGGAAAAACGTCGAACAGGTAGAAGAAAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAATGAT  >  CP009273/1706205‑1706493                                                                                                                                                    |                                                                                                                                               ccGCGTTTGTAATCGTACTCAATTTGCGCCGGGGAAAAACGTCGAACAGGTAGAAGAAAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGc                                                                                                                                              <  2:104993/149‑1 (MQ=255)     gTTTGTAATCGTACTCAATTTGCGCCGGGGAAAAACGTCGAACAGGTAGAAGAAAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCg                                                                                                                                          >  2:37082/1‑149 (MQ=255)       ttGTAATCGTACTCAATTTGCGCCGGGGAAAAACGTCGAACAGGTAGAAGACCAGCTGCGTAGAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCt                                                                                                                                        <  2:726852/149‑1 (MQ=255)         gTAATCGTACTCAATTTTCGCCGGGGAAAAACGTCGAACAGGTAGAAGAAAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCtgt                                                                                                                                      <  2:684947/149‑1 (MQ=255)                   tCAATTTGCGCCGGGGAAAAACGTCGAACAGGTAGAAGAAAAGCTACTGAACATGCTTATATGCTAGTTTGCAGT‑GTCGGCGCCGCAGTGGTAGATCCTGGATGTGCGGAATACGTGCATTGCCCGCAAGGCGCGCTGTGGCGCTTGta                                                                                                                            >  2:730497/1‑149 (MQ=255)                                         gTCGAACAGGTAGAAGAAAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTtgt                                                                                                           >  1:575947/1‑144 (MQ=255)                                                  gTAGAAGAAAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACata                                                                                                  <  1:450510/144‑3 (MQ=255)                                                  gTAGAAGAAAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACaaa                                                                                                  <  1:579145/144‑1 (MQ=255)                                                     gaagaaAAGCTACTGAAGGTGGTTCAAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTtgtattcacaaagat                                                                                               <  1:367995/144‑13 (MQ=255)                                                      aagaaAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAgaga                                                                                              <  1:13923/144‑1 (MQ=255)                                                           taGCTACTGAAATTGGTTTCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGtt                                                                                         <  1:294035/143‑1 (MQ=255)                                                           gggctgctGAAGGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGtt                                                                                         <  1:294090/142‑1 (MQ=255)                                                           aaGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCCTTGGTTTATCCTGCACGGGCGTTATACCTGCTTTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGtt                                                                                         <  1:37501/144‑1 (MQ=255)                                                             gCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGa                                                                                       >  1:253514/1‑144 (MQ=255)                                                                    aaaGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTga                                                                                <  1:555231/144‑1 (MQ=255)                                                                    aaaGTGGTTCCAGCAGAGTGTAAAGTCGACTGC‑CAGCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTga                                                                                <  1:253324/144‑1 (MQ=255)                                                                        tGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTgaagaa                                                                            <  1:153169/144‑1 (MQ=255)                                                                           ttCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTa                                                                    >  2:739930/1‑149 (MQ=255)                                                                              catcagAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAgggg                                                                      <  1:330267/141‑1 (MQ=255)                                                                               agcagAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGCGAAAGTTGACATCTGAAGCAAAGGGGt                                                                     >  1:682320/1‑144 (MQ=255)                                                                                          aaGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACGTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGACGATCTTTGTGAATTCAAAGAGCAAGGTGACATCTGAAGAAAAGGAGTAACACCGATTa                                                          >  1:333099/1‑144 (MQ=255)                                                                                          aaGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCa                                                     <  2:221482/149‑1 (MQ=255)                                                                                             tCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCAGAAGAAAAGGGGTAACACCGATTAccc                                                       >  1:377622/1‑144 (MQ=255)                                                                                                    c‑caccaTTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGAt                                                <  1:33109/144‑1 (MQ=255)                                                                                                       accaTTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATaa                                              >  1:379985/1‑144 (MQ=255)                                                                                                        ccaTTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACctttc                                        <  2:126449/149‑1 (MQ=255)                                                                                                               ttGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACctttctt                                      >  1:311383/1‑144 (MQ=255)                                                                                                                   tCCTGCACGGGCGTTATACCTGCAGTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTAATGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATc                                  <  1:386137/144‑1 (MQ=255)                                                                                                                      tGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTa                          <  2:399439/149‑1 (MQ=255)                                                                                                                         aCGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCttt                            <  1:122045/144‑1 (MQ=255)                                                                                                                              cGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTGTAAAACATCt                  >  2:73006/1‑149 (MQ=255)                                                                                                                               gTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACATCtt                 >  2:612276/1‑149 (MQ=255)                                                                                                                                ttATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAACCATCttt                >  2:195970/1‑149 (MQ=255)                                                                                                                                    aCCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTATTTATCCTCTTTTAAAACATCTTTTTaa            <  2:637979/149‑1 (MQ=255)                                                                                                                                           ttGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACAACTTTTTAACg          >  1:224191/1‑144 (MQ=255)                                                                                                                                            tGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCAATGATAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAatg    >  2:690809/1‑149 (MQ=255)                                                                                                                                              cccGTAAGCCCCGTTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAatgat  <  2:434841/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                               CCGCGTTTGTAATCGTACTCAATTTGCGCCGGGGAAAAACGTCGAACAGGTAGAAGAAAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAATGAT  >  CP009273/1706205‑1706493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.