New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3845483 =	39 (0.900)	3 (0.070)	3/274	6.6	7.3%	coding (662/1689 nt)	ilvB	acetolactate synthase 2 large subunit
	?	CP009273	3845574 =	40 (0.980)					coding (571/1689 nt)	ilvB	acetolactate synthase 2 large subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGT  >  CP009273/3845435‑3845719                                                                                                                                            |                                                                                                                                                  tGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCtttt                                                                                                                                               >  1:149282/1‑144 (MQ=255)      ttactcCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGATTGGCAGCGTTACTCATCGCCGCTGCGCCACGAATGCTTTCCTCGCTAAAGGCGGGGGCCGCGGCTTTTTGTGc                                                                                                                                          >  1:45070/4‑144 (MQ=255)        tctcCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCg                                                                                                                                   >  2:114511/1‑149 (MQ=255)          tcCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATa                                                                                                                                      >  1:293068/1‑144 (MQ=255)           ccGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAg                                                                                                                                     >  1:187463/1‑144 (MQ=255)                  ttCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCtg                                                                                                                              >  1:474425/1‑144 (MQ=255)                  ttCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGttt                                                                                                                         >  2:150664/1‑149 (MQ=255)                     aCGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCGTGTTCTGCCATAGCGGGCagtgg                                                                                                                           >  1:303045/1‑143 (MQ=255)                          cctgTGCGGTCGCATTGACCACTGCGCCGCCCAGATAAAGCACCGGGCGTTTTGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCaa                                                                                                                      <  1:641805/141‑1 (MQ=255)                          cccGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCa                                                                                                                 <  2:601800/149‑1 (MQ=255)                                 gggCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCAGGCTGTGTTTCAATCTCAAAAACTg                                                                                                          <  2:372068/149‑1 (MQ=255)                                       aTTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGGTTCAATCTCAAAAACTGc                                                                                                         >  1:511546/1‑144 (MQ=255)                                        ttGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAGTCGCAAAAACTGcc                                                                                                        >  1:275429/1‑144 (MQ=255)                                        ttGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTGAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTg                                                                                                   <  2:127318/149‑1 (MQ=255)                                                     cgccCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGa                                                                                      >  2:523141/1‑149 (MQ=255)                                                       cccAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTa                                                                                         <  1:63176/144‑1 (MQ=255)                                                                aGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCt                                                                                >  1:580271/1‑144 (MQ=255)                                                                      gggCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACCTCCTTAGGAATGTCTATCcac                                                                          >  1:138832/1‑144 (MQ=255)                                                                        gCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGc                                                                   <  2:685911/149‑1 (MQ=255)                                                                            ttGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGATTGTTCTGCCATAGCGGGCTGTGTTTCAAGCTCAAAAACTGCCGTTTGCCCCTCCTTAGGAATGCCTATCGACACCggg                                                                    >  1:425610/1‑144 (MQ=255)                                                                                 aGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTCCAATCTCTAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGggcggc                                                          <  2:579398/149‑1 (MQ=255)                                                                                       aaTCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGAtt                                                    <  2:692159/149‑1 (MQ=255)                                                                                       aaTCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGAtt                                                    <  2:684077/149‑1 (MQ=255)                                                                                            tcGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTAGGCGGCCTGATTGCGCa                                               >  2:377081/1‑149 (MQ=255)                                                                                             cgccgcTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCaa                                              >  2:94362/1‑149 (MQ=255)                                                                                              gccgcTGCGTCACGAATGCTTTCTACGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGACTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGAGTGCGCaaa                                             >  2:601166/1‑148 (MQ=255)                                                                                                   tGCGTCACGCCTGCTTTCTTCGCTCCAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAATACTGCCGTTTGCACCTCCTTAGGAATGTCTATCCCCACCGGGCCTGGGCGGCCTGATCgctgaat                                             <  1:624573/144‑6 (MQ=255)                                                                                                       tCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCGCACCGGGCCTGGGCGGCCTGATTGCGCAATGCgg                                         >  1:342838/1‑144 (MQ=255)                                                                                                        cACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTGTTCTGCCATAGCGGGCTGTCTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTACCCACACCGGGCCTAGGCGGCCTGATTGCGCAATGCGGa                                        >  1:499067/1‑144 (MQ=255)                                                                                                         aCGGATGCTTTCTTCGCTAACGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGaa                                       <  1:247875/144‑1 (MQ=255)                                                                                                              tGCGTTCTTCGGTGAAGGCGGGGGCGGCGGCTTTTTCTGCCATCGCGGGCTGTGGTTCAATCTCAAAAACTGCCGTTTGCCCATCCTTAGGAATGTCGCGCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCAt                                  <  1:221200/144‑1 (MQ=255)                                                                                                                 tttCTTCGCTTACGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGTCTGTGTTTCATTCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCTCACCGGGCCTGTGCGGTCTGATTGCGCAATGCGGAAGGCATCGc                               <  1:550159/144‑1 (MQ=255)                                                                                                                 tttCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATg                          <  2:633123/149‑1 (MQ=255)                                                                                                                 tttCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATg                          >  2:407398/1‑149 (MQ=255)                                                                                                                       cGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACTCCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGa                         >  1:648280/1‑144 (MQ=255)                                                                                                                        gCTAAAGGCGGGGGCGGCGGC‑TTTTCTGCCATAGCGGGCTGTGTGTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGAcc                       >  1:676296/1‑144 (MQ=255)                                                                                                                         cTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCCATGCGGAAGGCATCGCTCATGACCTGCgg                  >  2:195912/1‑149 (MQ=255)                                                                                                                              tatctgggCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCgg                  <  1:102677/139‑1 (MQ=255)                                                                                                                                cGGGGGCGGCGGCCATTGCTGCCATAGCCGGCTGTGTTTCAATCTCAACAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGa                <  1:315071/144‑1 (MQ=255)                                                                                                                                  ggggCTGCTGTTTTTTTTGCCATAGCGGGCTGTGTTTCAAGCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGttcttc         <  2:203212/149‑1 (MQ=255)                                                                                                                                  ggggCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGttcttc         <  2:521738/149‑1 (MQ=255)                                                                                                                                   gggCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCACTCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGtt             <  1:350085/144‑1 (MQ=255)                                                                                                                                      cggcggcTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGata     <  2:658828/149‑1 (MQ=255)                                                                                                                                         cggcTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAACACTGCCGTTTGCACATCCTTAGGAATGACTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGCCCTCCGGGGGTTCTTCgg       >  1:159790/1‑143 (MQ=255)                                                                                                                                         cggcTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGt  <  2:702106/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                  TGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGT  >  CP009273/3845435‑3845719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.