| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1972748 = | 9 (0.510) | 6 (0.340) | 4/274 | NT | 40.0% | intergenic (‑294/‑486) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | = 2283592 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
TACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGT > CP009273/1972605‑1972885 | tACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACa < 2:247518/149‑1 (MQ=255) gTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCCCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTCACATAAATGTATAAGTCa > 2:33230/1‑149 (MQ=255) ttATCTAAGAGTTTTCCTAGATCGACGCAACTGTACTCGTCACTACACGCACCTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattc > 1:151523‑M2/1‑122 (MQ=255) ggcttttcctAATTCGGCGCATCTGTACTCGTCACTACACGCACATTCCGCGGAGGGGGGCTGCGATTTGCAATAATGCGTGATGCAGATCACACAAAACTCGCAATTACTTATggaaggtgcgaataagcggggaaattcttctcggc > 1:147551‑M2/4‑114 (MQ=255) gATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATCCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggc > 1:110832‑M2/1‑114 (MQ=255) aTTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTa > 2:3124/1‑149 (MQ=255) tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGAGTTTCAATAATGCGTGATGCAGATCACACAAAACCCTCAATTACTTAAggaaggtgcgaataagcgaggagatccttctcggctgactcagg < 1:78596‑M2/149‑45 (MQ=255) gcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCCATCTGTTAAAAAg < 1:162075‑M1/58‑1 (MQ=255) tgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTtgctacg < 1:201954‑M1/70‑1 (MQ=255) tgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacg < 1:202018‑M1/70‑1 (MQ=255) tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa < 1:43844/149‑1 (MQ=255) aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa > 2:88250/1‑149 (MQ=255) aCGGAGGGGGGCTGTGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgt > 2:117966‑M2/1‑65 (MQ=255) gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTCCTTAACATAAATGTATAAGTCATACTTTTTTTTTGGGTGTATTTCAATCTGTCAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa < 2:62784/149‑1 (MQ=255) gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa > 2:210678/1‑149 (MQ=255) gATTTTCAATCATGCGGGATGCAGATCACACAACACTCTCAATTACTTAAggaaggtgcgaatcagcggggaaattattctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatca > 1:254791‑M2/1‑50 (MQ=255) ttttCAATAATGCGTGATGCAGATCACACAAAACACTAACTTACTCAAggaaggtgcgaataggcggggaaattcttctcggctgacgcagtcatctcatttcttcatgtttgagccgcttctttctcccgtcaatgccttgaatcagc < 1:2941‑M2/149‑102 (MQ=255) cacacaAAACTTCCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctttatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccat > 2:78596‑M2/1‑24 (MQ=255) aaaaCACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTGTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCGAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa < 1:33230/149‑1 (MQ=255) aaaCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttaggccgtttcttcgccgtttaagg < 1:25360‑M2/149‑132 (MQ=255) aaaCACTCAACAGCCTAATATGAAGGTATAACGTATACTTTCGTTTTGCGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTAAAAAAAAAAAAAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc < 1:153206/149‑1 (MQ=255) ttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAGGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATTTTGCGCAAAGTCAAAAAAAATCACCg < 2:42933‑M1/137‑1 (MQ=255) ttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAGCTCACCg < 2:42946‑M1/137‑1 (MQ=255) tcggaccttccTTAACATAAATGTATAAGACATACTTTAGTTTTGGGTGTATTTTAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAACTGGATGTTGCGCACAGTCAAATTAACtcacagt < 1:263321‑M1/138‑4 (MQ=255) | TACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGT > CP009273/1972605‑1972885 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |