New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1203246 =	45 (0.650)	21 (0.340)	18/258	3.9	30.9%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	1205075 =	54 (0.880)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.

GTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGG  >  CP009273/1203104‑1203393                                                                                                                                               |                                                                                                                                                    gtggtgGAGGCATGCGGTGCCAGCCTTGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGttt                                                                                                                                               <  2:703193/149‑1 (MQ=255)       gAGGCATCCTGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGttt                                                                                                                                               <  1:638784/143‑1 (MQ=255)         ggCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGCTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGATTGGGAGAAg                                                                                                                                       >  2:544785/1‑149 (MQ=255)          gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTAGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTggg                                                                                                                                            >  1:782485/1‑143 (MQ=255)            aTCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAACCGGCTCTCGAAAACCTTGGCTTGGgag                                                                                                                                          >  1:830286/1‑143 (MQ=255)              ccGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTGCTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGaa                                                                                                                                        <  1:513725/143‑1 (MQ=255)                 gTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa                                                                                                                                     >  1:679491/1‑143 (MQ=255)                 gTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaaa                                                                                                                               <  2:294914/149‑1 (MQ=255)                  ggcaaggcTGGGGAAGGGGCGGCACGACCAGTTACTTCCCGAACTTCGCGCGCTGCTGTTATGCCGGAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGGTCTCGAAAACCTTGGTTTGGGAGAAGGAg                                                                                                                                    <  1:484165/136‑1 (MQ=17)                           ggAGACGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTGTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctctgcattac                                                                                                                           <  1:608247/143‑12 (MQ=18)                              gaAGGGGCGGCACGACCAGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctctgcattacctg                                                                                                                        <  1:873461/143‑15 (MQ=17)                                  gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                                                                              >  2:932663/1‑149 (MQ=255)                                    gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCCACGGCTa                                                                                                            >  2:500041/1‑149 (MQ=255)                                     cggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAGACTCAATGCAGCAAc                                                                                                                 <  1:426081/143‑1 (MQ=255)                                     cggcACGACCAGGTACTTACCGCACTTCGCGCGCTGCTGTTAGGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc                                                                                                           <  2:888829/149‑1 (MQ=255)                                         aCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt                                                                                                             >  1:741060/1‑143 (MQ=255)                                           gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                     >  2:136267/1‑149 (MQ=255)                                           gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGCAGCAAAACTCAATGCAGCAACGGCTAc                                                                                                           <  1:351442/143‑1 (MQ=255)                                             ccAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGAc                                                                                                   >  2:80205/1‑149 (MQ=255)                                                     ttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc                                                                                                 >  1:286587/1‑143 (MQ=255)                                                      tacCGCACTTCGCGCGCTGCTGTTGAGCGGCAAGAATCCGTTTGGCGATATCAATTCGGATGGCACTGTGCAACCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTAAATGCAGCAACGGCTGCATTAGGACGCAACGGtt                                                                                          >  2:884662/1‑149 (MQ=21)                                                                          tgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGGTTGGGAGAAGGAGCCAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGGTTCATAGCTATAcag                                                                            >  1:703309/1‑141 (MQ=255)                                                                           gTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa                                                                     >  2:424301/1‑149 (MQ=255)                                                                                 ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGATCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                               <  2:1052304/149‑1 (MQ=255)                                                                                      aGAATCCGTTTGGCGATATCAAATCCGGTGGCACGGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                <  1:413886/143‑1 (MQ=255)                                                                                        aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtgg                                                              >  1:18615/1‑143 (MQ=255)                                                                                          tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGCGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGc                                                      >  2:811350/1‑149 (MQ=255)                                                                                            cGTTTGGCGATATCAAATCGGATGGCACTGGGCAAACAGCTCTCGAAACCCTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCaa                                                    <  2:1039111/149‑1 (MQ=255)                                                                                            cGTTTGGCGATAACAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCaa                                                    <  2:9355/149‑1 (MQ=255)                                                                                              tttGGCGATATCAAATCGGATGGCACTGTGCAATCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTACTGa                                                        <  1:548197/143‑1 (MQ=255)                                                                                               ttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCa                                                 <  2:848314/149‑1 (MQ=255)                                                                                                   cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                                   <  1:853876/143‑1 (MQ=255)                                                                                                        tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt                                        >  2:1014404/1‑149 (MQ=255)                                                                                                             tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTGGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTg                                   <  2:105835/149‑1 (MQ=255)                                                                                                              cGGATGGCACGGTCCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgg                                  <  2:408437/149‑1 (MQ=255)                                                                                                                gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                                <  2:1000497/149‑1 (MQ=255)                                                                                                                gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGATTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTcc                                      >  1:415603/1‑142 (MQ=255)                                                                                                                      aCTGTGCAAACGGCTCTGGAAAACCTTGGTTTGGGAGAAGGAGCAAGACTCATTGCAGCAACGGCTGCATTAGGACGCACCGGTTTCATAGTTATACCGGTTATGGTTGGTGGTATTGAGCAATAGGTAATCATTCAgggggg                                >  1:122930/1‑143 (MQ=255)                                                                                                                         gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCTGTTATGATTGGTGATAATGAGAAATCAGTAATCATTCAGTGGGGATGAAATGc                       >  2:376978/1‑149 (MQ=255)                                                                                                                           gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg                     <  2:745116/149‑1 (MQ=255)                                                                                                                            ttcttcattttcataaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATGGGTGGTAGTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                          >  1:1042716/15‑143 (MQ=38)                                                                                                                              aaCGGCTCTCGAAAACCTTGGTTTGGGAGGAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATg                        <  1:137101/143‑1 (MQ=255)                                                                                                                                 ggCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg                     >  1:982620/1‑143 (MQ=255)                                                                                                                                    tttcataaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt            <  2:165186/143‑1 (MQ=255)                                                                                                                                      tcGGAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCCACGGCTACATTAGGACGCACCTGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                <  1:117703/143‑1 (MQ=255)                                                                                                                                              cTTTGTTTGGGAGGACGTGCAAACCGCAATGCCGCAACGGCTACATGAGGACGCAGCGGTTTCATAGCTATCCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg  <  2:407503/149‑1 (MQ=255)                                                                                                                                              cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGGACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGAAATCAGTAATCATTCAGTGAGGGTGGAATGCCGCAAAAGCATCTGc        >  1:589691/1‑143 (MQ=255)                                                                                                                                               ttGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCCTCTGcc       >  1:281918/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                                    GTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGG  >  CP009273/1203104‑1203393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.