New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1203261	44 (0.640)	14 (0.230)	13/258	5.4	23.3%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	= 1205058	53 (0.860)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.

GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGAT  >  CP009273/1203120‑1203400                                                                                                                                              |                                                                                                                                            gTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa                                                                                                                                            >  1:679491/1‑143 (MQ=255) gTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaaa                                                                                                                                      <  2:294914/149‑1 (MQ=255)  ggcaaggcTGGGGAAGGGGCGGCACGACCAGTTACTTCCCGAACTTCGCGCGCTGCTGTTATGCCGGAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGGTCTCGAAAACCTTGGTTTGGGAGAAGGAg                                                                                                                                           <  1:484165/136‑1 (MQ=17)           ggAGACGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTGTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctctgcattac                                                                                                                                  <  1:608247/143‑12 (MQ=18)              gaAGGGGCGGCACGACCAGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctctgcattacctg                                                                                                                               <  1:873461/143‑15 (MQ=17)                  gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                                                                                     >  2:932663/1‑149 (MQ=255)                    gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCCACGGCTa                                                                                                                   >  2:500041/1‑149 (MQ=255)                     cggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAGACTCAATGCAGCAAc                                                                                                                        <  1:426081/143‑1 (MQ=255)                     cggcACGACCAGGTACTTACCGCACTTCGCGCGCTGCTGTTAGGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc                                                                                                                  <  2:888829/149‑1 (MQ=255)                         aCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt                                                                                                                    >  1:741060/1‑143 (MQ=255)                           gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                            >  2:136267/1‑149 (MQ=255)                           gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGCAGCAAAACTCAATGCAGCAACGGCTAc                                                                                                                  <  1:351442/143‑1 (MQ=255)                             ccAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGAc                                                                                                          >  2:80205/1‑149 (MQ=255)                                     ttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc                                                                                                        >  1:286587/1‑143 (MQ=255)                                      tacCGCACTTCGCGCGCTGCTGTTGAGCGGCAAGAATCCGTTTGGCGATATCAATTCGGATGGCACTGTGCAACCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTAAATGCAGCAACGGCTGCATTAGGACGCAACGGtt                                                                                                 >  2:884662/1‑149 (MQ=21)                                                          tgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGGTTGGGAGAAGGAGCCAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGGTTCATAGCTATAcag                                                                                   >  1:703309/1‑141 (MQ=255)                                                           gTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa                                                                            >  2:424301/1‑149 (MQ=255)                                                                 ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGATCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                                      <  2:1052304/149‑1 (MQ=255)                                                                      aGAATCCGTTTGGCGATATCAAATCCGGTGGCACGGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                       <  1:413886/143‑1 (MQ=255)                                                                        aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtgg                                                                     >  1:18615/1‑143 (MQ=255)                                                                          tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGCGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGc                                                             >  2:811350/1‑149 (MQ=255)                                                                            cGTTTGGCGATATCAAATCGGATGGCACTGGGCAAACAGCTCTCGAAACCCTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCaa                                                           <  2:1039111/149‑1 (MQ=255)                                                                            cGTTTGGCGATAACAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCaa                                                           <  2:9355/149‑1 (MQ=255)                                                                              tttGGCGATATCAAATCGGATGGCACTGTGCAATCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTACTGa                                                               <  1:548197/143‑1 (MQ=255)                                                                               ttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCa                                                        <  2:848314/149‑1 (MQ=255)                                                                                   cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                                          <  1:853876/143‑1 (MQ=255)                                                                                        tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt                                               >  2:1014404/1‑149 (MQ=255)                                                                                             tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTGGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTg                                          <  2:105835/149‑1 (MQ=255)                                                                                              cGGATGGCACGGTCCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgg                                         <  2:408437/149‑1 (MQ=255)                                                                                                gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                                       <  2:1000497/149‑1 (MQ=255)                                                                                                gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGATTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTcc                                             >  1:415603/1‑142 (MQ=255)                                                                                                      aCTGTGCAAACGGCTCTGGAAAACCTTGGTTTGGGAGAAGGAGCAAGACTCATTGCAGCAACGGCTGCATTAGGACGCACCGGTTTCATAGTTATACCGGTTATGGTTGGTGGTATTGAGCAATAGGTAATCATTCAgggggg                                       >  1:122930/1‑143 (MQ=255)                                                                                                         gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCTGTTATGATTGGTGATAATGAGAAATCAGTAATCATTCAGTGGGGATGAAATGc                              >  2:376978/1‑149 (MQ=255)                                                                                                           gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg                            <  2:745116/149‑1 (MQ=255)                                                                                                            ttcttcattttcataaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATGGGTGGTAGTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                                 >  1:1042716/15‑143 (MQ=38)                                                                                                              aaCGGCTCTCGAAAACCTTGGTTTGGGAGGAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATg                               <  1:137101/143‑1 (MQ=255)                                                                                                                 ggCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg                            >  1:982620/1‑143 (MQ=255)                                                                                                                    tttcataaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt                   <  2:165186/143‑1 (MQ=255)                                                                                                                      tcGGAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCCACGGCTACATTAGGACGCACCTGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                       <  1:117703/143‑1 (MQ=255)                                                                                                                              cTTTGTTTGGGAGGACGTGCAAACCGCAATGCCGCAACGGCTACATGAGGACGCAGCGGTTTCATAGCTATCCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg         <  2:407503/149‑1 (MQ=255)                                                                                                                              cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGGACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGAAATCAGTAATCATTCAGTGAGGGTGGAATGCCGCAAAAGCATCTGc               >  1:589691/1‑143 (MQ=255)                                                                                                                               ttGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCCTCTGcc              >  1:281918/1‑143 (MQ=255)                                                                                                                                tGGTTTGGGAGAAGGAGCAACACTCAATGCAGCAACGGCTACCTTCGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggg       <  2:681795/149‑1 (MQ=255)                                                                                                                                  gTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggggg     >  2:1129950/1‑149 (MQ=255)                                                                                                                                     tGGGAGCAGGAGCAATACCGAGTGCAGCAACGGCTACCTTAGGACGCACCGGTTTCATAGCTATACCGGTTATGTTTGGTGGTATTTAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGAt  <  2:249860/149‑1 (MQ=255)                                                                                                                                         agaAGGAGCAAACCTCAATGCAGCAACGTCAACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAATGGTGGTATTGAGCAATCAGTAATCATTAAGTGGGGGTGGAATGCCGCCAAAGCATCTGCCTCTcgggggg    >  1:252273/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                            GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGAT  >  CP009273/1203120‑1203400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.