New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2455823 =	2 (0.040)	43 (0.910)	36/296	0.3	95.6%	coding (1039/1341 nt)	fadL	long‑chain fatty acid outer membrane transporter
	?	CP009273	3576788 =	NA (NA)					intergenic (+10/‑55)	yrhA/insA	pseudogene, interrupted by IS1E/IS1 repressor TnpA

CCAGAAACGGTCCTGGTCCGGAATGGAGATAGAACGATTCTGTGCAGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2455963‑2455823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAT  >  CP009273/3576788‑3576932                                                                                                                                                                                                                                                                                                CCAGAAACGGTCCTGGTCCGGAATGGAGATAGAACGATTCTGTGCAGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGC                                                                                                                                           >  2:481905/1‑149      AACGGTCCTGGTCCGGAATGGAGATAGAACGATTCTGTGCAGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCAGCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATTCTGACA                                                                                                                                      >  1:421526/1‑149      AACGGTCCTGGGCCGGAATGGAGATAGAACGATTCTGTGCAGGAACTGGGCTGTCATCAAAGTCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCA                                                                                                                                      <  2:523621/149‑1         GGTCCTGGTCCGGAATGGAGATAGAACGATTCTGTGCAGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTACTAAGTGGTACCCAACGCGATGTGGTCAGCAACGTTAGTGACGCTGCCAACT                                                                                                                                   >  1:574650/1‑149            ccgGGTCCGGAATGGAGTTAGACCGATGCTGTGCAGTAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGTTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTAC                                                                                                                                <  1:345611/146‑1            CCTGGTCCGGAATGGGGATAGAACGATTCGGTGCAGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTAC                                                                                                                                <  1:259740/149‑1              TGGTCCGGAATGGAGATAGAACGATTCTGTGCAGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCGATGAGCCGAAAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTG                                                                                                                              >  2:564929/1‑149               GGTCCGGAATGGAGATAGAACGATTCTGTGCAGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGA                                                                                                                             <  2:75454/149‑1                   CGGAATGGAGATAGAACGATTCTGTGCAGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTA                                                                                                                         <  1:650047/149‑1                       ATGGAGATAGAACGATTCTGTGCAGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCCACTTACTGATTTAGTGT                                                                                                                     >  2:158229/1‑149                           AGATAGAATGATTCTGTGCAGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGA                                                                                                                 <  2:111634/149‑1                             gTAGAACGATTCTGTGCAGGAACTGGGCTGTCATCAAAGTCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATG                                                                                                               <  2:335502/148‑1                             ATATAACGATTCTGTTCAGGAACGGGGCTGTCATGAAAGGCGATACCGGGACGGAAGTTCCAGTTATCATCGTAGTAATAACTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATG                                                                                                               <  1:186710/149‑1                             ATAGAACGATTCTGTGCAGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATG                                                                                                               <  2:182292/149‑1                                  ACGATTCTGTGCAGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGACAACATACAGATGTAGTATATGATGGTGTT                                                                                                          >  2:37896/1‑149                                         TGTGCAGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG                                                                                                   <  1:327446/149‑1                                              AGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTC                                                                                              <  2:633305/149‑1                                               GGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGCAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCC                                                                                             >  1:514138/1‑149                                                 AACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCACCGCGATGCGGTAAGCATCTTTGGTGCTGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAG                                                                                           >  2:363361/1‑149                                                  ACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTATCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGT                                                                                          <  2:257709/149‑1                                                   CTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCGGTTATGATAGTAGTAATAAGTGGTACCCAACGCGATGCGGGAAGCATCTTTGGTGATGTTGCGAACTTACTGATTTGGTGTGTGATGGTGTTTTGTAGGTGCTCCGGTG                                                                                         >  1:140003/1‑149                                                     GGGCTGTCATCAAAGGCTATACCCGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGC                                                                                       <  2:655998/149‑1                                                           TCATCAAAGGCGTTACTGGTTCGGAAGGTCCAGTTATCATCGTATTAATAAGTGGAACCCAACGCGAGGCGGTAAGCATCGTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT                                                                                 <  2:208553/149‑1                                                           TCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT                                                                                 <  2:437343/149‑1                                                             ATCAAATGCCATACCGGTACGGAAGGTTCATGTATCATCGTAGTAATAAGTTGTATCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTT                                                                               <  2:591650/149‑1                                                                 AAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTAT                                                                           <  2:516431/149‑1                                                                    GCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG                                                                        <  1:481905/149‑1                                                                            GGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCT                                                                >  2:387799/1‑149                                                                                               TCAACGTAGTAATAAGTGGTACCCAACGCGATGGGGTAAGCATCTTTGGCGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGCGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGG                                             <  1:507006/149‑1                                                                                                CATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGG                                            <  2:551083/149‑1                                                                                                   CGTAGCAATCGGTGGTTCCCAACGCGACGCGGTAAGCATCTTGGGTGCTGCTGTCCACTTACTGATTTAGTGTATTATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTG                                         <  1:610985/149‑1                                                                                                       GTAATAATTGGTACCCAACGCGATGCGGTAAGCATCTTTCGTTATGCTGCCAACTTACTGATTTAGTGTATGATCGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTtctgc                                     <  1:687818/149‑6                                                                                                       GTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGCTGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCTCTCCTGTTCAGCTCCTAACGGGGAGGTGC                                     >  2:146943/1‑149                                                                                                               tgccACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGC                             <  2:431500/145‑1                                                                                                                 GTACCCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAA                           <  2:620963/149‑1                                                                                                                     CCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGCCGGGGTGGTGCGTAACGGCAAAAGC                       >  2:307242/1‑149                                                                                                                     CCAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGC                       >  1:639942/1‑149                                                                                                                      CAACGCGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTCCTCCAGTGGCTTCTGTGTCTATCAGCTGTCCCCCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAGAGCc                      >  1:28676/1‑148                                                                                                                           CGATGCGGTAAGCATCTTTGGTGATGCTGCCAACTTTCTGATCTAGTGTATGCTGGTGTTTTTGAGGTGCTCGTGTGGCTTCTGTTTGTATCTGCTGTCCCGGCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCC                 <  1:451995/149‑1                                                                                                                               GCGGTAAGCATCGTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGAC             <  2:482915/149‑1                                                                                                                                      GCATCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCG      >  1:443550/1‑149                                                                                                                                         TCTTTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTA   >  2:640835/1‑149                                                                                                                                          CTTTGGGGATGCTGCCAACTTACTGATTTAGTGTATGATGGTTTTTTTGAGGTGCTCCAGTGGCTTCTGGTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAT  <  1:352128/149‑1                                                                                                                                                                                                                                                                                                CCAGAAACGGTCCTGGTCCGGAATGGAGATAGAACGATTCTGTGCAGGAACTGGGCTGTCATCAAAGGCGATACCGGTACGGAAGGTCCAGTTATCATCGTAGTAATAAGTGGTACCCAACGCGATGCGGTAAGCATCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2455963‑2455823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAT  >  CP009273/3576788‑3576932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.