| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4590670 = | 66 (1.400) | 4 (0.090) | 4/284 | 5.3 | 6.0% | coding (123/738 nt) | dnaC | DNA biosynthesis protein |
| ? | CP009273 | 4590685 = | 61 (1.350) | coding (108/738 nt) | dnaC | DNA biosynthesis protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGAACTACTGGCCTGGCAAAAAGAACAAGGAGCGATCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4590712‑4590670‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctccTTGTTCTTTTTGCCAGGCCAGTAGTTCTTCACCCGTTTTGAATGCGGGTTTGATATGGGCAGGCATCATTTTTTGCAGGCGTTGCATCAGGTCGCCAACGTTTTTCATCGTTACCCTCTGAATCCTGGTGGAATTTGGCTGTCAGG > CP009273/4590685‑4590830 AGAACTACTGGCCTGGCAAAAAGAACAAGGAGCGATCCGCTCCTTGTTTTTTTTGCCAGGCCAGTAGTTCTTCACCCGTTTTGAATGCGGGTTTGATATGGGCAGGCATCATTTTTTGCAGGCGTTGCATCAGGTCGCCAACGTTTTTC < 2:645594/149‑1AGAACTACTGGCCTGGCAAAAAGAACAAGGAGCGATCCGCTCCTTGTTCTTTTTGCCAGGCCAGTAGTTCTTCACCCGTTTTGAATGCGGGTTTGATATGGGCAGGCATCATTTTTTGCAGGCGTTGCATCAGGTCGCCAACGTTTTTC > 1:645594/1‑149 AAAAAGAACAAGGAGCGATCCGCTCCTTATTCTCGTTGCCAGGCCAGTAGTTCTTCACCCGTTTTGAATGCGGGTTTGATATGGGCAGGCATCATTTTTTGCAGGCGTTGCATCAGGTCGCCAACGTTTTTCATCGTTACCCTCTGAAT > 1:551293/1‑149 ATCCGCTCCTTGTTCTTTTTGCCAGGCCAGTAGTTCTTCACCCGTTTTGAATGCGGGTTTGATATGGGCAGGCATCATTTTTTGCAGGCGTTGCATCAGGTCGCCAACGTTTTTCATCGTTACCCTCTGACTCCTGGTGGAATTTGGCT > 1:337200/1‑149 CTCCTTGTTCTTTTTGCCAGGCCAGTACTTCTTCACCCGTTTTGAATGCGGGTTTGATATGGGCAGGCATCATTTTTTGCAGGCGTTGCATCAGGTCGCCAACGTTTTTCATCGTTACCCTATGAATCCTGGTGGACTTTGGCTGTCAG > 1:626550/1‑149 TCCTTGTTTTTTGTGCCAGGCCAGTAGTTCTTCACCCGTTTTGAATGCGGGTTTGATATGGGCAGGCATCATTTTTTGCAGGCGTTGCATCAGGTCGCCAACGTTTTTCATCGTTACCCTCTGAATCCTGGTGGAATTTGGCTGTCAGG < 1:134780/149‑1 AGAACTACTGGCCTGGCAAAAAGAACAAGGAGCGATCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4590712‑4590670‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctccTTGTTCTTTTTGCCAGGCCAGTAGTTCTTCACCCGTTTTGAATGCGGGTTTGATATGGGCAGGCATCATTTTTTGCAGGCGTTGCATCAGGTCGCCAACGTTTTTCATCGTTACCCTCTGAATCCTGGTGGAATTTGGCTGTCAGG > CP009273/4590685‑4590830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |