New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1391495	NA (NA)	33 (0.700)	24/296	1.1	100%	intergenic (+146/‑127)	insH1/ynaJ	IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein
	?	CP009273	= 1972751	0 (0.000)					intergenic (‑297/‑483)	flhD/uspC	flagellar class II regulon transcriptional activator, with FlhC/universal stress protein

CTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAG  >  CP009273/1391353‑1391642                                                                                                                                               |                                                                                                                                                    cTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCctaact                                                                                                                                               >  1:711694/1‑149 (MQ=11) cTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAAAGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCctaact                                                                                                                                               >  2:582097/1‑149 (MQ=11)     ggATAACGCCTTAAATGGCGACGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCTGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATc                                                                                                                                           <  2:538071/149‑1 (MQ=18)            gCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCCCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGt                                                                                                                                    >  1:17353/1‑149 (MQ=255)               ttAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTCACGGCAGACAAAATCGGCTCAACCATGACGACAAGAAATAACTGACTCACACGAGAAGAATTTCACCGCTTAACCGCACCTTACccaactatccgtgcgtgaaa                                                                                                                                 >  1:39781/1‑136 (MQ=2)                  aaTGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATTACGTAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTg                                                                                                                              <  1:663439/149‑1 (MQ=255)                       cGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTGACTACTCAATGCGTTGATAGTAAAt                                                                                                                         >  1:158847/1‑149 (MQ=255)                        gaagaccaggTCTAAATAGGCTGATGCAAGTCATTTACGGAAGAAAAAATGGGCTCAAACAGGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTGCCCTAACTAATCAATGCGTTGAGTTTaaccc                                                                                                                        >  1:70906/9‑146 (MQ=14)                         aagaaACGGTCCAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTACTCAATGCGTTGCTTGTACATcc                                                                                                                       >  1:202799/1‑149 (MQ=255)                           gaaACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAg                                                                                                                     <  1:526019/149‑1 (MQ=255)                                             tGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTc                                                                                                   >  2:523011/1‑149 (MQ=255)                                               aTTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCTCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTCAGAGCTGAGGTTTTCag                                                                                                 >  1:460731/1‑149 (MQ=255)                                                ttCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAACTGACTGAGTCATCCGAGAAGAATTTCCCAGCTTATTCGCACCTTACCTAACTAATCGATGCGTTGATTGTCAATCCAGCTAAGAGGTGAGGttttttaa                                                                                                >  2:25922/1‑145 (MQ=18)                                                 tCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGCGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCGGCTAAGAGGTGAGGTTTTCaggg                                                                                               >  1:29137/1‑147 (MQ=255)                                                   aaGGCATTTACGGGAGAAAAAATCGGCTCAAACAGGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTGTCAGAGCa                                                                                             >  1:359817/1‑149 (MQ=255)                                                   aaGGCAGTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCa                                                                                             <  2:702470/149‑1 (MQ=255)                                                     ggCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCAAGCTAAGAAGTGAGGTTTGCAGagaaga                                                                                           >  2:273899/1‑149 (MQ=255)                                                     ggCATTTACGGGAAAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAGATCCAGCTAAGAGGTGAGGGTTTCCGAGCAGa                                                                                           >  2:529003/1‑149 (MQ=255)                                                               ggAGAAAAAAGCGGCTCAAAGATGAAGAAATGAAAGGACGGAGGCAGCCGAGACGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCCTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGaa                                                                                 <  2:27008/149‑1 (MQ=25)                                                               ggAGAAAAAAGCGGCTCAAAGAGGGGGTAATGAAATGACTGAGTCAGCCGAGAAGAATTTGCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGaa                                                                                 <  1:317383/149‑1 (MQ=25)                                                                     agaaTCGGCTCATACATTAAGAAATGAAATGACTGAGCCAGCCGAGAAGAATTGCCCCGCTTATTCGCACCTTCCCTAACTAAGCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGTGGTTTTCAGAGCAGACAACGGTGAAATGTCa                                                                           <  1:678268/147‑1 (MQ=25)                                                                              tCAAACATTAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTGCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGt                                                                  <  1:492642/149‑1 (MQ=255)                                                                              tCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCACGCTCAACAGCAACTTCCCTAACTGATCAATGAGTCGTTTGTAAAGTCTGGTAAGCGACGTGGCTGTTATAACACACAACGGGGAAATGTCATGGTATTGt                                                                  >  1:451540/1‑149 (MQ=9)                                                                               cAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGtt                                                                 >  2:150003/1‑149 (MQ=255)                                                                                     tGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACgcgt                                                           >  1:501267/1‑146 (MQ=255)                                                                                      gaagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTa                                                          >  1:287914/1‑149 (MQ=255)                                                                                       aagaaATGAAATGATTGAGTCAGCCTAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAg                                                         <  1:728176/149‑1 (MQ=255)                                                                                       aagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAg                                                         <  1:56001/149‑1 (MQ=255)                                                                                       aagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAg                                                         <  2:321019/149‑1 (MQ=255)                                                                                       aagaaAGGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAg                                                         <  2:156236/149‑1 (MQ=255)                                                                                                  tgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAAGGTCATGGTATTGTTACGTTTAGGTAACAAGaaa                                              >  1:298219/1‑149 (MQ=255)                                                                                                   caCTGAGTCAGCCGAGAAGAATTCCCCCGTTTCTCCGCACCTTCCCTAACTAACCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAAt                                             <  2:354010/148‑1 (MQ=39)                                                                                                       gAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGt                                         <  2:118751/149‑1 (MQ=255)                                                                                                         gTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCt                                       <  1:523011/149‑1 (MQ=255)                                                                                                            aGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGca                                    <  2:307528/149‑1 (MQ=255)                                                                                                            aGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGca                                    <  1:565321/149‑1 (MQ=255)                                                                                                                  gaagaaTTTCCCCGCTTATTCGCATCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGa                              <  2:359817/149‑1 (MQ=255)                                                                                                                           ccccGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTATGTAACAAGAAATTTGTCTGCACAAGGATTAcatcat                     >  2:31299/1‑149 (MQ=255)                                                                                                                             ccGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGa                   <  2:70906/149‑1 (MQ=255)                                                                                                                              cGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGAt                  >  1:683699/1‑149 (MQ=255)                                                                                                                               gCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGAtt                 <  2:771241/149‑1 (MQ=255)                                                                                                                                cTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTa                >  1:635062/1‑149 (MQ=255)                                                                                                                                       gCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGaa         >  2:402755/1‑149 (MQ=255)                                                                                                                                          tcTTCCCTAACGAATCAATGCGTAGATTGTAAATCCAGGTAAGAGGTTATTTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACt      <  1:273899/148‑1 (MQ=255)                                                                                                                                              cccTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCGTGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAg  <  2:695103/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    CTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAG  >  CP009273/1391353‑1391642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.