New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1723990	26 (0.550)	4 (0.090)	4/282	5.3	13.2%	coding (647/4617 nt)	lhr	putative ATP‑dependent helicase
	?	CP009273	= 1724009	28 (0.620)					coding (666/4617 nt)	lhr	putative ATP‑dependent helicase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TACGCGGCGTCGAAACGGTAATTATTGATGAAGTCCACGCGGTAGCGGGCAGTAAACGTGGTGCGCATCTGGCGTTAAGTCTGGAGCGGCTCGATGCGCTGCTCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAACCCGCCCGCAATGCGCCATCCGCAGATACGAATTGTCGTACCGGTCGCCAATATGGATGATGTCTCATCGGTCGCC  >  CP009273/1723852‑1724129                                                                                                                                           |                                                                                                                                            tACGCGGCGTCGAAACGGTAATTATTGATGAAGTCCACGCGGTAGCGGGCAGTAAACGTGGTGCGCATCTGGCGTTAAGTCTGGAGCGGCTCGATGCGCTGCTCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCAcatcgctggct                                                                                                                                   >  2:681440/1‑139 (MQ=255)                 aatAATTATGGATGAAGTCCACGCGGTAGCGGGCAGTAAACGTGGTGCGCATCTGGCGTTAAGTCTGGAGCGGCTCGATGCGCTGCTCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCGCAGCCAGCGATCTGgcaa                                                                                                                   >  1:480474/3‑148 (MQ=255)                                       tgtgtggCGGGCAGTAATGGTGGCGCGCGTGTGGCGTGAAGTCTGGGGCGGCTGGATGCGCTGTTCCGCACCGCGGCGCAGCGTATGCGCCTTTCTGCCACTGTGCGCTCAGCCTGCGATGTGGCAGCATTTCTTGGTGGCGATCGccc                                                                                             <  1:461252/143‑1 (MQ=255)                                        cgGTAGCGGGCAGTAAACGTGGTGCGCATCTGGCGTTAAGTCTGGAGCGGCTCGATGCGCTGCTCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCg                                                                                            <  2:51265/149‑1 (MQ=255)                                        cgGTAGCGGGCAGTAAACGTGGTGCGCATCTGGCGTTAAGTCTGGAGCCGCTCGATGCGCTGCTCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCg                                                                                            <  2:51704/149‑1 (MQ=255)                                              cGGGCAGTAAACGTGGTGCGCATCTGGCGTTAAGTCTGGAGCGGCTCGATGCGCTGCTCCACACCGCAGCACAGCGAATTGGCCTGTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACg                                                                                      <  2:193625/149‑1 (MQ=255)                                               gggCAGTAAACGTGGTGCGCATCTGGCGTTAAGTCTGGGGCGGCTCGATGCGCTGCTCCACACCTCAGCACGGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGATGGCGATCGCCCGGTTACgg                                                                                     >  1:478882/1‑149 (MQ=255)                                               gggCAATAAACCTGGTGCGCATCTGGCGTTAAGTCTGGAGCGGCTCGATGCGCTGCTCCACACCTCAGCACAGCGAATTGGCCTTACTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGTATTTCTTGGTGGCGATCGCCCGGTTACgg                                                                                     <  2:504035/149‑1 (MQ=255)                                                  cAGTAAACGTGGTGCGCATCTGGCGTTAAGTCTGGAGCGGCTCGATGCGCTGCTCCACACCTCACCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGGTCGCCCGGTTACGGTac                                                                                  >  1:507425/1‑148 (MQ=255)                                                       aatgtggtgCGCATCTGGCGTTAAGTCTGGAGCGGCTCGATGCGCTGCTCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAAc                                                                             <  2:420403/146‑1 (MQ=255)                                                          gtggtgCGCATCTGGCGTTAAGTCTGGAGCGGCTCGATGCGCTGCTACACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTAAGGTAGTCAAcccg                                                                          <  2:529050/149‑1 (MQ=255)                                                           tggtgCGCATCTGGCGTTAAGTCTGGAGCGGCTCGATGCGCTGCTCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTCGTCCAcccgc                                                                         >  1:691608/1‑149 (MQ=255)                                                              tgCGCATCTGGCGTTAAGTCTGGAGCGGCTCGATGCGCTGCTCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAAcccgcccg                                                                      >  1:398434/1‑149 (MQ=255)                                                                             aaGTCTGGAGCGGCTCGATGCGCTGCTCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAACCCGCCCGCCATGCGCCATCCGc                                                       >  2:124643/1‑149 (MQ=255)                                                                                     aGCGGCTCGATGCGCTGCTCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAACCCGCCCGCAATGCGCCATCCGCAGATACGa                                               <  2:702448/149‑1 (MQ=255)                                                                                          cTCGATGCGCTGCTCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAACCCGCCCGCAATGCGCCATCCGCAGATACGAATTGt                                          >  1:32543/1‑149 (MQ=255)                                                                                                ccgatcttCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAACCCGCCCGCAATGCGCCGTCCGCAGATACGAATTGTCGTAcc                                    <  2:391772/142‑1 (MQ=255)                                                                                                    tgctCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGATAGTCAACCCGCCCGCAATGCGCCATCCGCAGATACGAATTGTCGTACCgggc                                >  1:467674/1‑147 (MQ=255)                                                                                                     gctCCACACCTTAGCACAGCGAATTGGCCTTTCTGCCACTGTGCTCTTAGCCAGCGATGTGGCAGCATGTGTTGGTGGCGATCGCCCGGTTACGGTAGTCAACCCGCCCGCAATGCGCCATCCGCAGATACGAATTGTCGTACCGGTCg                               <  2:101003/149‑1 (MQ=255)                                                                                                     gctCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAACCCGCCCGCAATGCGCCATCCGCAGATACGCATTGTCGTACCGGTCg                               >  1:109232/1‑149 (MQ=255)                                                                                                        ccACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCCGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAACCCGCCCGCAATGCGCCATCCGCAGATACGAATTGTCGTACCGGTCGCCa                            >  2:171692/1‑149 (MQ=255)                                                                                                        ccACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAACCCGCCCGCAATGCGCCATCCGCAGATACGATTTGTCGTActgagttcgg                            >  1:391772/1‑140 (MQ=255)                                                                                                        ccACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAACCCGCCCGCAATGCGCCATCCGCAGATACGAATTGTGGTACCGGTCGCCa                            >  1:303055/1‑149 (MQ=255)                                                                                                         cacaCCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAACCCGCCCGCAATGCGCCATCCGCAGATACGAATTGTCGTACCGGTCGCCaa                           >  2:712555/1‑149 (MQ=255)                                                                                                           cactccagcctaGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCTATCGCCCGGTTACGGTAGTCAACCCGCCCGCAATGCGCCATCCGCAGATACGAATTGTCGTACCGGTCGCCAata                         <  2:586244/138‑1 (MQ=255)                                                                                                               tCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAACCCGCCCGCAATGCGCCATCCGCAGATACGAATTGTCGTACCGGTCGCCAATATGga                     <  2:142323/149‑1 (MQ=255)                                                                                                                                  tttCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAACCCGCCCGCAATGCGCCATCCGCAGATACGAATTGTCGTACCGGTCGCCAATATGGATGATGTCTCATCGGTCGcc  >  2:342591/1‑149 (MQ=255)                                                                                                                                           |                                                                                                                                            TACGCGGCGTCGAAACGGTAATTATTGATGAAGTCCACGCGGTAGCGGGCAGTAAACGTGGTGCGCATCTGGCGTTAAGTCTGGAGCGGCTCGATGCGCTGCTCCACACCTCAGCACAGCGAATTGGCCTTTCTGCCACTGTGCGCTCAGCCAGCGATGTGGCAGCATTTCTTGGTGGCGATCGCCCGGTTACGGTAGTCAACCCGCCCGCAATGCGCCATCCGCAGATACGAATTGTCGTACCGGTCGCCAATATGGATGATGTCTCATCGGTCGCC  >  CP009273/1723852‑1724129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.