| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2096424 | NA (NA) | 11 (0.560) | 9/270 | NT | 45.8% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2427745 | 13 (0.660) | coding (476/660 nt) | dedA | DedA family inner membrane protein | |||||
GATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCGAGAT > CP009273/2427606‑2427883 | gATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATgga < 2:82189‑M2/143‑4 (MQ=255) gCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGAc > 1:259748/1‑149 (MQ=255) gCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGGACCCACAACAGTGAGCCGATACGGTTATAAGCGGCCAAATGAc > 1:8177/1‑149 (MQ=255) ccGGCAAAATAGAAACCACAATAACCCCGACTATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCGGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagt > 1:246960‑M2/1‑132 (MQ=255) ggCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTa < 1:145836/149‑1 (MQ=255) aaaaTAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACg < 2:127702/143‑1 (MQ=255) tAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGCAGAAATAGCCTGCGTAGGTCAAAAGCAGTCCCCACAACAGTGCGCTGATCACGTTATAAGCGGCGAAATGACGGTag > 2:30948/1‑142 (MQ=255) aGAAACCACAATAATCCCGACGAACAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACAtgt < 1:155338/149‑1 (MQ=255) acaATAATCCCGACGATCAGCAGCTTCAGGTTATCCAGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACAtggg > 2:320979/1‑141 (MQ=255) acaATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGCCGGAACGACAggtg > 2:10215/1‑143 (MQ=255) actcgcagtTTAAGGTGACCCGCAACCAACGGGATCGTACCGAAGAAATAGCGTGCGGAGGTAAAAAGCATTACCAACAACTTTGCGCGGATCACGTTATAAGCGGCGAAATGACTGTACGACATGTGGCCCATTCCCGcaac < 2:171403/139‑1 (MQ=255) ccATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc < 2:1145‑M2/143‑69 (MQ=255) aTCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtacgaacaaggccctgatataagatcatgtttgtcatctggagccatagaacagggttgatcat < 2:147014‑M2/143‑71 (MQ=255) aTCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACACGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCgg > 2:206826/1‑143 (MQ=255) cGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc < 1:221577‑M2/149‑90 (MQ=255) gTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacagtaccctcatatgagagcgtgtttgtcatctggagccatagaacaggggtcatcatgagtcatcaacttaccttcgccgaccgtgaatt < 2:19593‑M2/143‑104 (MQ=255) gTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcag < 1:55028‑M2/149‑110 (MQ=255) tAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagt < 1:199036‑M2/149‑111 (MQ=255) aaaaGCAGCACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTtctc < 1:79033/149‑1 (MQ=255) cAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgcc > 1:91479‑M2/1‑32 (MQ=255) cggccaacaGTGCGCCGTGGACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCAGTGCCGCAACCAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATaa < 2:121228/139‑1 (MQ=255) ccACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagggaattcagcagtaagcgacgtcagg < 1:136631‑M2/149‑124 (MQ=255) caGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaa > 1:227492‑M2/1‑20 (MQ=255) caGTGAGCGGATCACGTTATtgaaggtgcgaacaagacactgatatgagatcgggtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaa > 1:211728‑M2/1‑20 (MQ=255) tgagaggATCGCGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATggg > 2:168509/7‑143 (MQ=255) gTTATggacggtgcgaacaaggccctgatatgagatcatgtttgtcatctggagccacagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattt > 2:17823‑M2/1‑5 (MQ=255) | GATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCGAGAT > CP009273/2427606‑2427883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |